mRNA_Ecto-sp6_S_contig98.18748.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18748.1
Unique NamemRNA_Ecto-sp6_S_contig98.18748.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig98.18748.1 vs. uniprot
Match: D7G0W9_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0W9_ECTSI)

HSP 1 Score: 446 bits (1146), Expect = 1.030e-152
Identity = 269/286 (94.06%), Postives = 269/286 (94.06%), Query Frame = 1
Query:    1 MQALRTSVLAQGSLQAVRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPFDWDTPSASAPPAPEAGAEERXXXXXXXXXPRRRAFFGMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ELGYKGS-IHRVVTGTGIMGGDVEGYEGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECGEI 849
            MQALRTSVLAQGSLQAVRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPFDWDTP A  PPAPEAGAEER         PRRRAFF MSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ELGYKGS IHRVVTGTGIMGGDVEGY GKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECGEI
Sbjct:    1 MQALRTSVLAQGSLQAVRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPFDWDTPLA--PPAPEAGAEERQQGGSGRRRPRRRAFFAMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGSVIHRVVTGTGIMGGDVEGYGGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECGEI 284          
BLAST of mRNA_Ecto-sp6_S_contig98.18748.1 vs. uniprot
Match: A0A836C8D9_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8D9_9STRA)

HSP 1 Score: 212 bits (539), Expect = 3.560e-62
Identity = 123/281 (43.77%), Postives = 161/281 (57.30%), Query Frame = 1
Query:    1 MQALRTSVLAQGSLQAVRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPFDWDTPSASAPPAPEAGAEERXXXXXXXXXPRRRAFFGMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGS-IHRVVTGTGIMGGDVEGYEGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEEC 840
            MQA R + +  G+L+  R   R S G GWY ++++ G DAF + R P PFDWD    +AP AP                 R+RA+  +++ G   G+VEFELASDLLPVT +NFL+LC G          T                                  YKG+ IH +  G G+MGGDVEG  GK+SHS   G R+F DE F IPH++ GLLTMANSG+ TNGSQFY+T   A H+DGRSVAFGRV  G++VVR V+G++S++ KPVS++ I +C
Sbjct:    1 MQAFRVATVVPGALRHTRM-ARGSRGWGWYLKHKQQGDDAFIRDRPPTPFDWD----AAPAAP-----------------RKRAYVEIAIAGENIGKVEFELASDLLPVTCKNFLQLCTGAATGPDGAPLT----------------------------------YKGTPIHTLAKGVGLMGGDVEGGNGKKSHSGL-GKRYFRDEGFFIPHSSEGLLTMANSGIDTNGSQFYVTIGPAPHMDGRSVAFGRVVGGMDVVRRVFGLFSVKAKPVSKVVITDC 224          
BLAST of mRNA_Ecto-sp6_S_contig98.18748.1 vs. uniprot
Match: W7TUT6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUT6_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.200e-52
Identity = 116/279 (41.58%), Postives = 148/279 (53.05%), Query Frame = 1
Query:   61 TRASTGRGWYQRYQRMGPDAFRKARAPNPFDWDTPSASAPPAPEAGAEERXXXXXXXXXPRR-RAFFGMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGV-TVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGS-IHRVVTGTGIMGGDV---------------EGYEGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECG 843
            +R   GRGWY+ Y+  GP+ F++ R P PFDW  PS + PP+ EA              PRR + F G+S+D  P GR+  ELA D+LP+ +ENF  LC G        G  T                                LGY GS IHRVV G GI+GGD+               +   G  +HS   G RFFPDE+F IPHT PGLL+M ++G H NGS F+I+T A  HLDGRSV FGRV  G+EV+ AV   Y+IRG+PV+ + +EE G
Sbjct:   32 SRGDNGRGWYELYKEAGPEGFKRYRPPTPFDWSPPSTATPPS-EA--------------PRRSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKT-------------------------------GLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGL-GPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAG 263          
BLAST of mRNA_Ecto-sp6_S_contig98.18748.1 vs. uniprot
Match: A0A4D9CP74_9STRA (PPIase cyclophilin-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CP74_9STRA)

HSP 1 Score: 186 bits (471), Expect = 2.840e-50
Identity = 115/279 (41.22%), Postives = 147/279 (52.69%), Query Frame = 1
Query:   61 TRASTGRGWYQRYQRMGPDAFRKARAPNPFDWDTPSASAPPAPEAGAEERXXXXXXXXXPRR-RAFFGMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGV-TVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGS-IHRVVTGTGIMGGDV---------------EGYEGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECG 843
            +R   GRGWY+ Y+  GP+ F++ R P PFDW  PS +  P+ EA              PRR + F G+S+D  P GR+  ELA D+LP+ +ENF  LC G        G  T                                LGY GS IHRVV G GI+GGD+               +   G  +HS   G RFFPDE+F IPHT PGLL+M ++G H NGS F+I+T A  HLDGRSV FGRV  G+EV+ AV   Y+IRG+PV+ + +EE G
Sbjct:  147 SRGDNGRGWYELYKEAGPEGFKRYRPPTPFDWSRPSTATTPS-EA--------------PRRSKVFLGLSLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKT-------------------------------GLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGL-GPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAG 378          
BLAST of mRNA_Ecto-sp6_S_contig98.18748.1 vs. uniprot
Match: A0A7S2BM91_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BM91_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.130e-44
Identity = 100/258 (38.76%), Postives = 132/258 (51.16%), Query Frame = 1
Query:   70 STGRGWYQRYQRMGPDAFRKARAPNPFDWDTPSASAPPAPEAGAEERXXXXXXXXXPRRRAFFGMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGSIHRVVTGTGIMGGDVEGYEGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECG 843
            S+GRGWY++Y++ G + FRK   P PFDW           EAGA                 +  +SVDG   GRVE EL  ++LP+T+ NF +LC G      +   T                                      IH VV  + I+ GDVE   GK SHSA  G R+F DEA ++PHT  G+++M N G+ TNGSQFYITT  +  LDG SVAFGRVT G++VV ++  ++SIRG PVS +T+   G
Sbjct:   67 SSGRGWYKKYEKEGEEGFRKYNPPTPFDWS----------EAGATSL-------------VYLDVSVDGADPGRVEIELLDEILPITTTNFKKLCTGENPDGLSYADT-------------------------------------PIHHVVKDSAIVAGDVELKTGKGSHSAL-GTRYFDDEALVMPHTEAGIVSMVNGGVDTNGSQFYITTAPSPQLDGYSVAFGRVTSGMDVVGSITNLFSIRGVPVSTVTVTAAG 263          
BLAST of mRNA_Ecto-sp6_S_contig98.18748.1 vs. uniprot
Match: A0A7S1UAR4_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAR4_9STRA)

HSP 1 Score: 159 bits (402), Expect = 5.340e-42
Identity = 97/259 (37.45%), Postives = 134/259 (51.74%), Query Frame = 1
Query:   76 GRGWYQRYQRMGPDAFRKARAPNPFDWDTPSASAPPAPEAGAEERXXXXXXXXXPRRRAFFGMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGS-IHRVVTGTGIMGGDVEGYEGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECGEI 849
            G GWY++Y++ GP+ FRK + P PFDWD+   S                      R+R FF ++VDG   GR+  E   D+LPVTSENF +L      A A  +A L                                 YK S IHR++  + ++ GDVEG  G+ SHSA  G R+F  E F +PH+ PG+++M ++    NGSQFYIT E   HLDGR  AFGRV +G+++V+ + G +S    PVS+I+  E G I
Sbjct:   28 GTGWYRKYEKEGPEGFRKYKLPTPFDWDSNDPSK---------------------RKRVFFDVNVDGESKGRIVVETLDDVLPVTSENFQKL------AMAPKDAWLT--------------------------------YKNSGIHRIMKTSALVAGDVEGGSGRASHSAL-GRRYFEHEGFYVPHSEPGIVSMVSNKRDENGSQFYITIEPCPHLDGRCTAFGRVVEGMDLVQELRGTFSRHEIPVSDISFGETGVI 226          
BLAST of mRNA_Ecto-sp6_S_contig98.18748.1 vs. uniprot
Match: A0A7R9UCG5_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCG5_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.590e-39
Identity = 93/282 (32.98%), Postives = 135/282 (47.87%), Query Frame = 1
Query:    1 MQALRTSVLAQGSLQAVRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPFDWDTPSASAPPAPEAGAEERXXXXXXXXXPRRRAFFGMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGS-IHRVVTGTGIMGGDVEGYEGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECG 843
            M   R + +   + + V+   +  +G GWY++Y+  GP+ FRK   P PFDW    AS  P+                  R + F   +VDG   GRV  E   D+LP+TS+NF +LC                                             L YK S +HR++  + ++ GDVEG  G+RSHSA  G R+F  E F +PH+ PG+++M ++    NGS FYITT A  HLDGR  AF RV +G+EV+  +  +YS    PV+++T  + G
Sbjct:   18 MYTFRRAAVRSQAFRTVKRFRKRESGLGWYKKYEEEGPEGFRKYDPPTPFDW----ASCEPSK-----------------RSKVFLDFAVDGETRGRVVIETLDDILPITSKNFQKLCEA--------------------------------------PKDSWLSYKKSGVHRIMKTSALVAGDVEGTNGRRSHSAL-GRRYFEHEGFYVPHSEPGIVSMVSNRRDENGSMFYITTAACPHLDGRCTAFARVVEGMEVIDEIRALYSRHEIPVADVTFSDSG 239          
BLAST of mRNA_Ecto-sp6_S_contig98.18748.1 vs. uniprot
Match: F0Y6J0_AURAN (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6J0_AURAN)

HSP 1 Score: 145 bits (366), Expect = 1.070e-37
Identity = 88/204 (43.14%), Postives = 112/204 (54.90%), Query Frame = 1
Query:  247 RAFFGMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGS--IHRVVTGTGIMGGDVEGYEGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYG-MYSIRGKPVSEITIEECGEI 849
            R FF ++VDG  AGR+E EL  +LLP T ENF  LC      + +G                                    GY G+    RVV G G++GG V+   G  SHSAF+G R F DE F +PH  PGLL+MAN+G+ TNGSQFY+TT AA H+DGR VAFGRV  GL+VV+ +   +Y+ RG PV  + I  CG +
Sbjct:    1 RCFFDVAVDGEAAGRIELELLDELLPETCENFRLLCGD---GAPSG-----------------------------------FGYAGANLARRVVKGVGLLGGVVDAPGG--SHSAFAGRRVFADEGFFVPHAEPGLLSMANAGVDTNGSQFYLTTAAAPHMDGRCVAFGRVAAGLDVVQTLADTLYTQRGVPVEHVEIAACGTL 164          
BLAST of mRNA_Ecto-sp6_S_contig98.18748.1 vs. uniprot
Match: A0A7S3NRJ3_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NRJ3_9STRA)

HSP 1 Score: 147 bits (371), Expect = 4.700e-37
Identity = 95/261 (36.40%), Postives = 124/261 (47.51%), Query Frame = 1
Query:   70 STGRGWYQRYQRMGPDAFRKARAPNPFDWDTPSASAPPAPEAGAEERXXXXXXXXXPRRRAFFGMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGS--IHRVVTGTGIMGGDVEGYEGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRA-VYGMYSIRGKPVSEITIEECG 843
            S G GWY++Y++ GPD+FR+   P PFD+D   A                       R   FF + V     GR+EFEL  +LLPVT ENF  LC+G   +                                         YKGS  I  +  G  IMGGDV    G  SHSA+   R++ DE F +PH+  G+L+ AN+G+ TNGSQFYIT +   H+DGR VAFGRV  G +V+   +  +Y  RG P   ITI + G
Sbjct:   45 SPGHGWYEKYKKFGPDSFRRWERPKPFDFDAADAQV------------------LGKRTYCFFDIGVAESKVGRIEFELLDELLPVTCENFKLLCSGFAPSGFR--------------------------------------YKGSHFIRLMARGAAIMGGDVATAGG--SHSAWK-QRYYADEGFFVPHSQAGILSSANAGIDTNGSQFYITLKECPHMDGRCVAFGRVATGYDVITGLIKDVYMQRGIPTKSITILDAG 246          
BLAST of mRNA_Ecto-sp6_S_contig98.18748.1 vs. uniprot
Match: A0A0L0DSF0_THETB (Peptidyl-prolyl cis-trans isomerase D n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DSF0_THETB)

HSP 1 Score: 136 bits (343), Expect = 2.680e-32
Identity = 79/202 (39.11%), Postives = 105/202 (51.98%), Query Frame = 1
Query:  247 RAFFGMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGS-IHRVVTGTGIMGGDVEGYEGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECGEI 849
            R FF +S+ GVPAGR+ F+L +D+ P TSENF  LC G      +G+A                                 L YKGS  HRV+    I GGD   + G    S +     F DE F + HT PGLL+MAN+G  TNGSQF++TT    HLDG+ V FG V KG+ VVR +  + +   +P+  + IE+CGE+
Sbjct:   10 RTFFDISIGGVPAGRIVFKLYTDITPKTSENFRALCTGEKGVGESGKA---------------------------------LSYKGSTFHRVIEDFMIQGGDFTNHNGTGGESIYGAK--FEDENFEVMHTKPGLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVLKGMGVVREIEALETADDRPIDAVVIEDCGEL 176          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0W9_ECTSI1.030e-15294.06Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A836C8D9_9STRA3.560e-6243.77Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
W7TUT6_9STRA1.200e-5241.58Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannoc... [more]
A0A4D9CP74_9STRA2.840e-5041.22PPIase cyclophilin-type domain-containing protein ... [more]
A0A7S2BM91_9STRA1.130e-4438.76Peptidyl-prolyl cis-trans isomerase n=1 Tax=Floren... [more]
A0A7S1UAR4_9STRA5.340e-4237.45Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phaeom... [more]
A0A7R9UCG5_9STRA3.590e-3932.98Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pingui... [more]
F0Y6J0_AURAN1.070e-3743.14Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A7S3NRJ3_9STRA4.700e-3736.40Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aureou... [more]
A0A0L0DSF0_THETB2.680e-3239.11Peptidyl-prolyl cis-trans isomerase D n=1 Tax=Thec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:147246..151052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score446.8
Seed ortholog evalue7.5e-123
Seed eggNOG ortholog2880.D7G0W9
Model size1519
KEGG koko:K01802,ko:K05864,ko:K20097
KEGG Pathwayko04217,ko04218,map04217,map04218
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0546@2759
Ec32 ortholog descriptionCyclophilin-type peptidyl-prolyl cis-trans isomerase domain
Ec32 orthologEc-23_002000.1
EC5.2.1.8
Cds size852
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350602.4944434-UTR-Ecto-sp6_S_contig98:147245..1479121682350602.4944434-UTR-Ecto-sp6_S_contig98:147245..147912Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig98 147246..147912 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350602.50753-CDS-Ecto-sp6_S_contig98:147912..1481291682350602.50753-CDS-Ecto-sp6_S_contig98:147912..148129Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 147913..148129 -
1682350602.516551-CDS-Ecto-sp6_S_contig98:148739..1488671682350602.516551-CDS-Ecto-sp6_S_contig98:148739..148867Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 148740..148867 -
1682350602.525441-CDS-Ecto-sp6_S_contig98:150545..1510521682350602.525441-CDS-Ecto-sp6_S_contig98:150545..151052Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 150546..151052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18748.1prot_Ecto-sp6_S_contig98.18748.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 147913..151052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18748.1

>prot_Ecto-sp6_S_contig98.18748.1 ID=prot_Ecto-sp6_S_contig98.18748.1|Name=mRNA_Ecto-sp6_S_contig98.18748.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=284bp
MQALRTSVLAQGSLQAVRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPF
DWDTPSASAPPAPEAGAEERQQGGSGRRRPRRRAFFGMSVDGVPAGRVEF
ELASDLLPVTSENFLRLCNGVTVASAAGEATLLRRQEQAGGGAAVEEEAV
EEKEEEEEEEEEELGYKGSIHRVVTGTGIMGGDVEGYEGKRSHSAFSGMR
FFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGR
VTKGLEVVRAVYGMYSIRGKPVSEITIEECGEI*
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mRNA from alignment at Ecto-sp6_S_contig98:147246..151052-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18748.1 ID=mRNA_Ecto-sp6_S_contig98.18748.1|Name=mRNA_Ecto-sp6_S_contig98.18748.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3807bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:147246..151052- (Ectocarpus species6 EcLAC_371)
ATGCAGGCACTCCGGACGAGCGTGCTGGCCCAGGGCTCTCTGCAGGCGGT CCGAGGAGGAACCCGAGCATCCACGGGGCGAGGATGGTACCAGCGGTACC AACGCATGGGGCCGGACGCCTTCCGCAAAGCCAGAGCTCCCAACCCCTTC GACTGGGACACACCATCAGCATCAGCACCACCAGCACCAGAGGCCGGGGC GGAAGAACGGCAGCAGGGAGGGAGCGGCAGGAGACGGCCACGACGGCGGG CCTTCTTCGGCATGAGCGTGGACGGCGTGCCCGCAGGGCGCGTGGAGTTT GAGCTGGCGAGCGACCTGCTGCCCGTGACGAGCGAGAACTTCTTGCGGCT GTGCAACGGCGTTACCGTCGCGTCTGCAGCCGGCGAGGCGACGCTGCTGC GACGACAAGAGCAGGCGGGGGGCGGGGCGGCGGTGGAGGAGGAAGCAGTC GAAGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTTGGCTACAA GGGCTCCGTGGCGAGTGCGGCTTCGGGCACAGTTTTTTCTAGCGAATGAC GTTGTATACCACCCCCCCGTGATACGAATGATGCTGGCGCCTGTGCCTGC ACACTTGTTACTCCGGGGCACACATGCATATGTACGATTGGTAGAGTGCC GAAAGTGGACCATCGTATCTTGATCACTTGGGGATAGCCGATACTGCTGT AGTTTGGAAGACATCTAGGGCCGAAATTAAACATTTTCAAGAAAATTACG ATTCAGGTCAACGGGGATGTGTTGGAAGTCCTCACAGATTTGACTCGTGC TGGCGACGAAGATTTGGGACAAAACCCCTAAATCCCTAGTACAAAGTAGT ACAGTTAGCGTCCGCAATTGAGAAACGCTTGTTTCAGGTCCAGCCTCGAA TTCTTATTGTGGGCTATAAACTCAGCGTATGTCGTTCAATTTCTTATGTC AAGTTCCTTATTTTTCGTGCCGCCAAATCCTGCTGAATTTCTTCTTTCGG CAATTTCTTTTTTCTCTGCTCACGAGAGCTGGCGGAGAGCACCATCGAAA CCGTACAGCAGACAGCATATCGTGGTTCGCAGCCTGTCTGGTGTGCTGTG CCAGAGCCGGAGCGCCAGAGAGCGCCAGAGTCGCCAGGGGGCCGGAGAGG GCGCCGCAAAAGAAACACACTCCCCTCGTCGTACCACTAATTATGCATGG GAGAAGGGGGGTAGTTGGAGAGGGGGGAAAGAGCGAGAGATAAGAGGAGC TACGGGGTGTTTCTTATTCGACACACTCTACAACGGTCAACCCTCGTTTC TTACGTAGTAGGGCAGCGGTCGCCGCTGTTTCTTATTGAGACATTTCTTA TCGTGTGACCCAGACTCAGCCATATTTCTTAACCCTATTTTCTTATTTTT CGTGGAAAAGTGAGCCTCTATTTCTTGGTAAAATATTTCTTTATTGCAGG CGTTGACTGTACTACGGCGCCGTGTACACGTGTGCAAATGAGCGAGTGTA TGCATACAGCAGTGTATTTTCAGCTGTAGCATAATCGCATGTACCATGTA GCCGATTAGCTCCAGATTGTAAAGTATGCTGCTCTATCTTGAAGCTCCAC CTGCCAAACAACAAACAACGCGGCTCGCACACACACCGGTAAAGTACAAA TATTGAGTTTGGCGCGGCCTGTTGTGCGTGAGCAACTCGTCTCTCGGGTT CTCCCCAACCACCAAGCGTCGAAACAAAACATGCAAGCAGATGCGCGTTT CGTTTGAGCTCGATCAGGTTTTGCGGCACCATGAACAACTCGCTCCGCTC GTATCTACCGTCTTCTACGTACGCACATCTTATCCTCTCCCCAGCGGCTC AACTACCGTTCGCGGCGCCCCTCTCAACCGTAGACAAGGAGAACACGCGG ATTGAAATAGCGGAAGCGCTGCCTCCTGCCCATTTTTGTCGCGCCGAATA GACGAGATGCTCGATCCGGAACGGGATGGTCGAAAAAATGTCAGCCCCCC CCCCCTGTTTTCGAGCCACCTTTCGCAAAGCAGGAATGATTTGATAAGCC ATCGGCGATCGGTCCTGCCCCGTCGTCTTCTCGAGGACGCGTGGTCAATG GTCTAACCGCTAAGGAATGCAAAACATAAGATTACCCCCACGCTACCCTC CCGGCACCCCAAACGTGGCGTATTCCTTCCTGCAGATCCATCGGGTTGTC ACCGGCACCGGCATCATGGGTGGCGACGTTGAGGGCTACGAAGGAAAGCG GAGCCACTCTGCCTTCAGCGGCATGCGTTTCTTCCCCGACGAGGCATTCC TCATCCCACACACGTGCGTGTTCCCGCGGGGGGTCTGGCTCTCTGGAGTG ACACTGGGGTGGGACTGGGGATGTGCGTGTGAACACGCCTCCTCGATTTT TTCCGTCCCGATCGCGACGCGACTTTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTGCGGCTTGCATTCAGCTCACGGCGTTGTGTTTGGTGCCGTGTGT TACAGGTACAATTCGCAAGTAATTGCTGTCGGTGCTTACTGACCTGTTGT TTTCGCGTAGTTGCTGTTTTCCTGAGAAGCGCTTCCGCATTCCAGTGGCG TTGTACCGTTGTCTTTTTTTTGTTATCCGCACATGACCGCATGGAAAAGT GTTCCTGGGCCTCCTGAATAGAAACGCAACAGCACGTACTGGATTGAGGT CGGGAAACGCTGCTGGAATGGAAGTATACACCAGTAAGTAGCACAGAGAC GCTACTACCTTCGCTGTAGCATAGGAAACGCGTAAACGGCACTTCAGTTG TGATGATCTCTACCTCTACCTAAACCCATCCGACACATATTTTTTTGTTT TTTTCCCCTCTTTTTTTCCGTCTTAACTTTTTTCCCTTTGTTATTTTTAT CTCCTCCACGAAAAACAACGCAGCGCGCCCGGCCTCCTCACGATGGCCAA CTCCGGGCTGCACACCAACGGCTCGCAGTTCTACATCACCACGGAGGCGG CGGGGCATCTGGACGGACGATCAGTAGCTTTCGGGAGGGTGACCAAGGGG CTGGAGGTAGTGAGGGCCGTCTACGGCATGTACAGCATCAGGGGCAAGCC GGTTTCGGAGATCACGATTGAAGAATGCGGCGAGATTTGAATTTAGCTTG ATTTGTTTCGGAGACTTGGATGGCCAAATGTGGCGAAATTTGACTTTGAC TTGACTTGACTTGACTTGACTTTACAGCGGTTCGGATTTGACAATCCCAA GGACCCGGCGGGGCAAGATGACAATATTGGTGCAACAGAGTCTTGGACTG TTTTTTTGTTGTGAGATCGGAAAAAGGTCCGGCGACGACGCCGAGGTCTT TTACCGTGTCGTTTCGACTATTCCGGCTTGGATTATCTCCCTACTGCTGT GATTCCTTGTTTTTCTTAAATATTTTGTTCAAAGTCGAGAAAGATGAACT CAGAGACCGGCGCCGTGTTTTTTCTCAGTGGAGAGCGTCCAGTTCGTTGC AATTGGGCCAAAAGGTGCCTTGAACATTTTTGCTTTTCTGCTTTCGCTTT TCGCTGGTGTGGGGCGGCCCGCGGGCATGTTGGAGACGCGATGCCTCGCG CTTCTTCGGGCGTTGGTGGTTGTGGAACGGGGGAGGTTTGTTGTTGGAGA GGTGGAGGGAGAAACGGTGGCAAGTATCCGAAACGCGAAAATCAAGAGAA GAAGAAATCAGAACGAATTTGGTTTGTCGGGTGGATTCACTTCCTTCCTT CCCCGCCTGCCCGCAACGGGCGACGCTGACGGGAAAAAGAAATCACCGCC TGGACCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:147246..151052-

>mRNA_Ecto-sp6_S_contig98.18748.1 ID=mRNA_Ecto-sp6_S_contig98.18748.1|Name=mRNA_Ecto-sp6_S_contig98.18748.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=852bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:147246..151052- (Ectocarpus species6 EcLAC_371)
ATGCAGGCACTCCGGACGAGCGTGCTGGCCCAGGGCTCTCTGCAGGCGGT
CCGAGGAGGAACCCGAGCATCCACGGGGCGAGGATGGTACCAGCGGTACC
AACGCATGGGGCCGGACGCCTTCCGCAAAGCCAGAGCTCCCAACCCCTTC
GACTGGGACACACCATCAGCATCAGCACCACCAGCACCAGAGGCCGGGGC
GGAAGAACGGCAGCAGGGAGGGAGCGGCAGGAGACGGCCACGACGGCGGG
CCTTCTTCGGCATGAGCGTGGACGGCGTGCCCGCAGGGCGCGTGGAGTTT
GAGCTGGCGAGCGACCTGCTGCCCGTGACGAGCGAGAACTTCTTGCGGCT
GTGCAACGGCGTTACCGTCGCGTCTGCAGCCGGCGAGGCGACGCTGCTGC
GACGACAAGAGCAGGCGGGGGGCGGGGCGGCGGTGGAGGAGGAAGCAGTC
GAAGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTTGGCTACAA
GGGCTCCATCCATCGGGTTGTCACCGGCACCGGCATCATGGGTGGCGACG
TTGAGGGCTACGAAGGAAAGCGGAGCCACTCTGCCTTCAGCGGCATGCGT
TTCTTCCCCGACGAGGCATTCCTCATCCCACACACCGCGCCCGGCCTCCT
CACGATGGCCAACTCCGGGCTGCACACCAACGGCTCGCAGTTCTACATCA
CCACGGAGGCGGCGGGGCATCTGGACGGACGATCAGTAGCTTTCGGGAGG
GTGACCAAGGGGCTGGAGGTAGTGAGGGCCGTCTACGGCATGTACAGCAT
CAGGGGCAAGCCGGTTTCGGAGATCACGATTGAAGAATGCGGCGAGATTT
GA
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