mRNA_Ecto-sp6_S_contig98.18744.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18744.1
Unique NamemRNA_Ecto-sp6_S_contig98.18744.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig98.18744.1 vs. uniprot
Match: D7G0X4_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X4_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 9.540e-90
Identity = 140/144 (97.22%), Postives = 143/144 (99.31%), Query Frame = 1 
Query:  289 SKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLRFVCTVATTAKGSTDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSEVEDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKALGEAL 720
            ++GELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKET+EELGLSCDESSLRFVCTVATTAKGSTDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSEVEDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKAL EAL
Sbjct:   32 TQGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETDEELGLSCDESSLRFVCTVATTAKGSTDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSEVEDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKALEEAL 175
[Close]
BLAST of mRNA_Ecto-sp6_S_contig98.18744.1 vs. uniprot
Match: A0A7S0NEA1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NEA1_9CRYP)

HSP 1 Score: 213 bits (541), Expect = 1.330e-60
Identity = 101/206 (49.03%), Postives = 141/206 (68.45%), Query Frame = 1 
Query:  127 GQDSGEMFDVFLPPEGGSLSVLSEPPRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLRFVCTVATTAKGSTDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSEVEDVKLVPMQALKEAYEAQ--------DPTYIPRPDYYVEPLFKALGEAL 720
            GQD  E+FDV+ PP   S+S     P  AG  K R LVH  GDWHR++H+WL++ +G L++Q+RS  KDTFPG WDVS+ GH ++G+  +ETA+KE  EELGL  +E  L ++ T+AT+ +GS+ + GDF+CNEYKDI+LL++DG ++DLKF+P EV+ V  V  + L+E  E Q        D  YIPRP +Y++ LF AL E +
Sbjct:   52 GQDLAELFDVYKPP--ASISSFRGEPEKAGISKQRKLVHTQGDWHRAIHLWLYDLQGNLIIQQRSEGKDTFPGKWDVSIAGHVSSGDSVIETAMKEAKEELGLDVEEEQLEYLGTIATSMRGSSPITGDFLCNEYKDIFLLKYDGSLEDLKFAPEEVQAVSRVGWKTLQEQLEQQIGPEQQSVDGPYIPRPRHYLDLLFGALRERI 255
[Close]
BLAST of mRNA_Ecto-sp6_S_contig98.18744.1 vs. uniprot
Match: L1JKA1_GUITC (Nudix hydrolase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JKA1_GUITC)

HSP 1 Score: 204 bits (519), Expect = 1.970e-57
Identity = 97/206 (47.09%), Postives = 139/206 (67.48%), Query Frame = 1 
Query:  127 GQDSGEMFDVFLPPEGGSLSVLSEPPRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLRFVCTVATTAKGSTDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSEVEDVKLVPMQALKEAYEAQ--------DPTYIPRPDYYVEPLFKALGEAL 720
            GQD  E+FDV+ PP   S+      P  AG  + R LVH  GDWHR++HIWL++ +G L++Q+RS  KDTFPG WDVS+ GH ++G+  +ETA+KE+ EELGL   +  L ++ T+AT+  GS+ + GDF+CNEYKDI+LL+++G + DLKF+P EV+ V  V  ++L++  E Q        D  YIPRP +Y++ LF AL E +
Sbjct:   51 GQDLSELFDVYKPP--SSIPGFRGEPERAGISRQRKLVHTQGDWHRAIHIWLYDGQGNLIIQQRSEGKDTFPGKWDVSIAGHVSSGDSVIETAMKESKEELGLDIKKEELEYLGTIATSMAGSSPITGDFLCNEYKDIFLLKYEGHLDDLKFAPEEVQAVSRVDWRSLRQQLEEQIGPDGQSIDGRYIPRPRHYMDLLFGALEERI 254
[Close]
BLAST of mRNA_Ecto-sp6_S_contig98.18744.1 vs. uniprot
Match: A0A7S0XXS4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XXS4_HEMAN)

HSP 1 Score: 205 bits (521), Expect = 4.140e-57
Identity = 101/204 (49.51%), Postives = 136/204 (66.67%), Query Frame = 1 
Query:  127 GQDSGEMFDVFLPPEGGSLSVLSEPPRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLRFVCTVATTAKGSTDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSEVEDVKLVPMQALKEAYEAQ--------DPTYIPRPDYYVEPLFKALGE 714
            GQD GE+FD++  P+  +    S  PR  G  K RG VH DGDWHR+VH+WL+  +GE VLQ+RS  KDTFPG WDVSVGGH T+G+  + T +KET EELG+   E+ L  + TVAT+ KG++   GDF CNE+KDI+LL++ G ++ L F+ +EV DVKLVP Q +++   AQ        D  Y+PRP  Y++ LF A+ E
Sbjct:   93 GQDLGELFDLYHAPD--AEFAASGEPRKTGKNKERGKVHRDGDWHRAVHVWLYTPQGEFVLQQRSEKKDTFPGKWDVSVGGHVTSGDSVMHTVLKETQEELGVEVTEAELERLPTVATSLKGNSPKQGDFTCNEFKDIFLLKYSGTLEGLNFADNEVSDVKLVPWQEVEKDMLAQVSPDGEPTDGAYVPRPMSYIDILFDAMRE 294
[Close]
BLAST of mRNA_Ecto-sp6_S_contig98.18744.1 vs. uniprot
Match: A0A6T7KLM2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A6T7KLM2_9EUKA)

HSP 1 Score: 197 bits (501), Expect = 4.080e-55
Identity = 105/211 (49.76%), Postives = 137/211 (64.93%), Query Frame = 1 
Query:   94 LSSAVEDEVEVGQDSGEMFDVFLPPEGGSLSV-LSEPPRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLR--FVCTVATTAKGSTDMHGDFVCNEYKDIYLLRHDGP---VQDLKFSPSEVEDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKAL 708
            +S+A  +    GQD GE+F+++ PP   SL+  LS PP   G +K RG VHADGDWHRSVH+WL  S G L+LQ+RS  KDT PGMWDVS  GH TAG++SL TA KE  EELGL  DE++LR   VCT+ + A+G+T  HG F+CNE +D+YLL+       V  L     EVE  +LV    +  A+E  +PT++PR  +YV  L +AL
Sbjct:   25 ISAACTNVNAEGQDLGEIFELYSPP--SSLTAPLSMPPTELGVQKPRGQVHADGDWHRSVHVWLSTSDGRLLLQRRSQYKDTHPGMWDVSCAGHITAGDDSLTTARKELEEELGLVIDETTLRRALVCTLPSCARGATARHGPFLCNELQDVYLLQRPAEQLEVGSLSLEAGEVEATELVDAHEVLRAWEQAEPTFVPRQPHYVHALRQAL 233
[Close]
BLAST of mRNA_Ecto-sp6_S_contig98.18744.1 vs. uniprot
Match: A0A7S0IRD5_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IRD5_9EUKA)

HSP 1 Score: 194 bits (492), Expect = 1.060e-53
Identity = 99/210 (47.14%), Postives = 137/210 (65.24%), Query Frame = 1 
Query:   97 SSAVEDEVEVGQDSGEMFDVFLPPEGGSLSVLSEPPRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLR--FVCTVATTAKGSTDMHGDFVCNEYKDIYLLRHDGPVQD---LKFSPSEVEDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKALG 711
            ++ +E     GQD  EMF+++ PP    +  LS+PP P G RK RG VHADGDWHRSVH+WL    G L+LQ+RS  KDT PGMWDVS  GH +AG++SL TA KE  EELG+S D S LR   +CT+ + A+G+T  HG FVCNE +DIYL+++     +   L     EVE ++L+  + + +A+E  + +++PRP +YV  L + LG
Sbjct:   35 AATLESANAFGQDLSEMFELYEPPH-CKIEPLSKPPVPLGVRKPRGEVHADGDWHRSVHVWLRTLDGRLLLQRRSQYKDTHPGMWDVSCAGHISAGDDSLGTARKELEEELGVSVDVSVLRGALLCTLPSCARGATTRHGPFVCNEIQDIYLVQYPAEQLEAGALSLESGEVEAIELLDARKVLQAWERAELSFVPRPPHYVRALREGLG 243
[Close]
BLAST of mRNA_Ecto-sp6_S_contig98.18744.1 vs. uniprot
Match: A0A7S0QHM2_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QHM2_9CRYP)

HSP 1 Score: 192 bits (488), Expect = 1.130e-52
Identity = 103/215 (47.91%), Postives = 132/215 (61.40%), Query Frame = 1 
Query:  118 VEVGQDSGEMFDVFLPPE-------GGSLSVLSEPPRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLRFVCTVATTAKGSTDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSEV--------EDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKALGEA 717
            V +GQ+ GE+FD +L P+       GG   VLS      G    R  VHA G WHR+VHIWL+NSKG+++LQKRS  KDTFP  WDVSVGGH +AG+  +E A++ET EELGL   E  L FV TVATT  GS+   G F CNEYKD++L R+DGP + L ++P EV        ++V+    + +  A E  D   I RP YY++ LF AL  A
Sbjct:   66 VHLGQNLGELFDTYLEPDASFFTAKGGVNPVLS------GKSLPRKQVHATGTWHRAVHIWLYNSKGQILLQKRSDEKDTFPSKWDVSVGGHLSAGDTVVEAALRETEEELGLKIGEGDLAFVATVATTVAGSSAKQGAFTCNEYKDLFLARYDGPAEALVYAPDEVAGVAWRDADEVEAALRKQIGPAGEQLDGPLIARPAYYLDALFPALRRA 274
[Close]
BLAST of mRNA_Ecto-sp6_S_contig98.18744.1 vs. uniprot
Match: A0A7S4B8T2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B8T2_CHRCT)

HSP 1 Score: 177 bits (448), Expect = 3.260e-46
Identity = 93/202 (46.04%), Postives = 122/202 (60.40%), Query Frame = 1 
Query:  124 VGQDSGEMFDVFLPPEGGSLSVLSEPPRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLR--FVCTVATTAKGSTDMHGDFVCNEYKDIYLLRHDGPVQD---LKFSPSEVEDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKALGE 714
            +GQD GE F+++  P   + ++LS PP P G RKARG VH DGDWHRSVH+WL +  G L+LQ+RS  KDT PG+WDVS  GH +AG+ SL+TA KE  EELG +   + L   FV T A+T +G T  HG F CNEY+DIYL        D   L     EV  V+++    L  A+E +D  ++PR   Y   L  A+ +
Sbjct:  136 LGQDLGEQFELYAGPLNEAPTILSAPPTPLGVRKARGEVHRDGDWHRSVHVWLGDEMGRLLLQRRSEHKDTHPGLWDVSCAGHISAGDGSLDTAQKELEEELGFAVGLAELEACFVGTFASTMRGITAKHGAFECNEYQDIYLFITPSASLDADKLVLGAGEVAGVQMIDATELISAWEREDAQFVPRSALYAHTLRAAVDK 337
[Close]
BLAST of mRNA_Ecto-sp6_S_contig98.18744.1 vs. uniprot
Match: A0A6V2PJN3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2PJN3_HETAK)

HSP 1 Score: 173 bits (438), Expect = 2.850e-45
Identity = 90/214 (42.06%), Postives = 130/214 (60.75%), Query Frame = 1 
Query:   91 LLSSAVEDEVEV---GQDSGEMFDVFL--PPEGGSLSVLSEPPRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLRFVCTVATTAKGSTDMHGDFVCNEYKDIYLLRHDG-PVQDLKFSPSEVEDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKALGE 714
            L+ + +  EV V   GQD+ E+F ++   PPE  S   +   P   G  KARG VH DGDWHRSVHIW+ + KG L+LQ+RS  KDTFP  WDVS GGH T  +  +ETA++E  EE+GL   E +   VC V +  KG+T  HGDF  NE++D+YL+  +G  + D+  +  EV ++K +     ++ Y+A +  Y+PRP  Y + LF+ + +
Sbjct:   72 LIRTLMAKEVAVYAEGQDASELFALYNAPPPECDSNCCV---PIKTGILKARGEVHRDGDWHRSVHIWIGDDKGNLMLQRRSKFKDTFPNCWDVSAGGHITGYDSVMETAVREVEEEVGLELPEQAFMHVCCVPSRLKGTTKRHGDFYDNEFQDMYLVIIEGLQLDDMTIAEGEVAEIKFMHYTEARKEYDAGNQLYVPRPKLYFKSLFEKMDK 282
[Close]
BLAST of mRNA_Ecto-sp6_S_contig98.18744.1 vs. uniprot
Match: A0A7S4UN69_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UN69_9DINO)

HSP 1 Score: 169 bits (429), Expect = 1.900e-44
Identity = 89/203 (43.84%), Postives = 123/203 (60.59%), Query Frame = 1 
Query:  115 EVEVGQDSGEMFDVFLPPEGGSLSVLSEP---PRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLRFVCTVATTAKGSTDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSE--VEDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKAL 708
            E   GQD  E+FD+  PP  G+   L  P   P   G  K R  VH DGDWHRSVH+WL + +G+L+LQ+RS  KDT PG WDVS  GH  AG+  LETA++E  EELGL+   S+L+ + T+A +A G+T+ HG F CNEY+++YLLR  G      +SP+E  V +++  P+   + +       Y+PR   Y++ L  AL
Sbjct:   51 EFPEGQDLDELFDLCEPPPEGAPGGLLAPGAGPALTGATKQRRWVHRDGDWHRSVHVWLLDEEGDLLLQRRSKHKDTHPGCWDVSCAGHIGAGDAGLETAVRELEEELGLAVPLSALKHLFTIAASASGATERHGPFRCNEYQEVYLLRVFGAHASRGYSPAEGEVAELRSEPIAETERSLRTGAADYVPRSREYIDALVGAL 253
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0X4_ECTSI9.540e-9097.22Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S0NEA1_9CRYP1.330e-6049.03Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1JKA1_GUITC1.970e-5747.09Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S0XXS4_HEMAN4.140e-5749.51Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A6T7KLM2_9EUKA4.080e-5549.76Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S0IRD5_9EUKA1.060e-5347.14Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0QHM2_9CRYP1.130e-5247.91Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S4B8T2_CHRCT3.260e-4646.04Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A6V2PJN3_HETAK2.850e-4542.06Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4UN69_9DINO1.900e-4443.84Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:76977..81909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start1
Seed ortholog score152.9
Seed ortholog evalue1.9e-34
Seed eggNOG ortholog296587.XP_002505779.1
Model size2008
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0016787,GO:0019538,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Exons5
EggNOG free text desc.NUDIX domain
EggNOG OGs2QT89@2759,34MH7@3041,37JK2@33090,COG0494@1
Ec32 ortholog descriptionNUDIX hydrolase domain
Ec32 orthologEc-23_001950.1
Cds size723
COG Functional cat.L
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18744.1prot_Ecto-sp6_S_contig98.18744.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 76977..80624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350601.8480449-CDS-Ecto-sp6_S_contig98:76976..772701682350601.8480449-CDS-Ecto-sp6_S_contig98:76976..77270Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 76977..77270 +
1682350601.8583732-CDS-Ecto-sp6_S_contig98:78041..780781682350601.8583732-CDS-Ecto-sp6_S_contig98:78041..78078Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 78042..78078 +
1682350601.866712-CDS-Ecto-sp6_S_contig98:78880..790831682350601.866712-CDS-Ecto-sp6_S_contig98:78880..79083Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 78881..79083 +
1682350601.8746867-CDS-Ecto-sp6_S_contig98:80087..802041682350601.8746867-CDS-Ecto-sp6_S_contig98:80087..80204Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 80088..80204 +
1682350601.88297-CDS-Ecto-sp6_S_contig98:80552..806241682350601.88297-CDS-Ecto-sp6_S_contig98:80552..80624Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 80553..80624 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350601.890794-UTR-Ecto-sp6_S_contig98:80624..819091682350601.890794-UTR-Ecto-sp6_S_contig98:80624..81909Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig98 80625..81909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18744.1

>prot_Ecto-sp6_S_contig98.18744.1 ID=prot_Ecto-sp6_S_contig98.18744.1|Name=mRNA_Ecto-sp6_S_contig98.18744.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=241bp
MRLPGAAANHQARAYRHAAARRGKESGAGSLLSSAVEDEVEVGQDSGEMF
DVFLPPEGGSLSVLSEPPRPAGFRKARGLVHADGDWHRSVHIWLHNSKGE
LVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDES
SLRFVCTVATTAKGSTDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSEVE
DVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKALGEAL*
back to top

mRNA from alignment at Ecto-sp6_S_contig98:76977..81909+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18744.1 ID=mRNA_Ecto-sp6_S_contig98.18744.1|Name=mRNA_Ecto-sp6_S_contig98.18744.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4933bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:76977..81909+ (Ectocarpus species6 EcLAC_371)
ATGAGACTCCCGGGTGCCGCGGCCAATCACCAAGCTCGGGCCTACCGTCA
TGCGGCGGCGAGAAGAGGGAAAGAGAGCGGGGCGGGGTCTCTGCTGTCTT
CTGCCGTGGAGGACGAAGTGGAGGTTGGGCAGGATTCTGGGGAGATGTTT
GACGTCTTCTTGCCGCCGGAGGGTGGATCCCTCTCGGTGCTCAGCGAGCC
CCCGCGGCCGGCGGGCTTCCGCAAGGCCAGGGGTCTCGTGCACGCCGACG
GTGACTGGCACAGGAGCGTGCACATATGGCTGCACAACTCCAAGGTGATG
GTGGAGTGCCTTGCCTGCGCTGGGGGCGTTGACTTGAAGAGGGCACATGC
GGGGACAGACGTCTTTACATGCGACACAtgttTGTTTCCACCCTTTGCTG
TTTCACCGGAAAACAGCGTAGGCACCTGCTGTAGAGGAGAGAGACATGAA
CAGGGACCGCGACATGACACATCATTACTAATCTCACATCTACACATCAC
CAGTGCAGTGTGAAGTTGGCAACGTTGAATGATGAACGAAAGCGATTGGG
TCGTAAGCTTGCTACAATCTAtacattgTATTGTACTGTTTGTTGTCCAG
CTGGCGCGTGCTACGTGCAGTACGCTGCATGGGAGCAAACTACTCCACAT
TCCTCCTGTTGGGATATCCACTTCGGACCAAGTACCAGGCGTACCGGTAC
ATACGTCAACCAGCGGTCGACCAGAGAAGGATATTCACTGAAGAAATGTG
TAAAGAGATACCTACGACTTGGCATCACGCTacaACACGAGAATACTTTG
GAGACTGACTCGATCACACCTTGTTGATTTTCCTCAATCGGCACCAGTTT
TGATGCATCATCTCTCTGGCACGCTGAATTTGATGCCTTCCCCAGACGAC
AAACCCCGGCCAACGGACGGCTCCGGGAGCAGAGCGTTTTATTCCGTCGA
GAGCACAGCTCATGAAATGGTCGAAACCGCTTTGGGGCTCTTGCCCCTTC
CCTCGCTCGCAAGCGCGGCTACTCACGCAGCCCCGCCATGATTGTTTCTG
TGTGTTCGAACGCAGGGCGAGCTGGTGCTGCAGAAGCGGTCGTCCTCGAA
AGGTACGGTTATAACAGTGGTAGACTGCTGGGGCGAGGAGCACCTGTAGC
CCTATTCCCAAATAGTGGGGTCATGCCATTTGTAGCAGGCCAATTGCAAG
TATACCCATCCTGACGACACATGGGTAGTCAATCACGCACCTCTGCAGTC
ACGCGGATGACCTGACTGGCCGTTGCCCCAATCGACGCGTTGCGAAGGTG
GCGCAAACTTCACCTTGAAACAGAGTACGAGGCTGTGTTGGAACACTAAA
GCTCTAGTCTTCATGCAAGATGACATGGACGTCGTGAGTTCGTGCCGACT
GTCACACGTTGCTTGTCTTTTGTTTGTCTTTTGTGAACAGCACGttTTTT
TTTTAATGTCTTGTCACCCTTGTGCACACTCCTGGCACAACGTCCCCGGG
TTTCACCGTAGGCGCGATCCGTGTGGTGCTGGACCAGCCTGATGTTCGTA
CTGTTTTTTATCCTCGCCGTAGACCTCCGGTGTCGCCTTAATTTGTACAC
ACTCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTCTCTCTCT
CTCTCTCTCATTCTCTCTGTCTCTCTTTCTCTCTCTCTCTCCCTCTCTCT
TTCCCACTCGCCCTCTCTCCCTCTCTCTCTCCGTTGCATATCCAACTTGT
TTTCCAATCATGCCTGGAAGCTTGCGGCAATCCAATCCCCTACCGATGCC
CACCTAACTCAGCCCGACACGTTCTTGCTTCGATCGAAAAAAACTCTACA
ATAGATACGTTTCCGGGGATGTGGGACGTTAGCGTGGGCGGGCACTTCAC
GGCAGGGGAAGAGAGCCTGGAGACGGCCATCAAGGAGACCAACGAGGAGC
TGGGCTTGAGCTGCGACGAGAGCAGCCTGCGCTTCGTGTGCACGGTGGCC
ACCACAGCCAAGGGGAGCACCGACATGCACGGCGACTTCGTCTGCAACGA
GTACAAGGTGCGCGCTCGGGCGAGCCAGAGGCCGCCGTGAGGGAATCATG
CCCCCGAAGTGGTTGTTCCTTGTGTGCCTGCCGGCTGAAGAAACATGCCG
CATGCAGCACGAGTCAGTACTTGCGGACCCGCCGGCGTGGAAACATTTAC
TGCGTGCTACAGGAATCGGTACTTGCAGACCCGCGGGCTTAAGAAACACG
CCGCGTGCTGCACGCGTCCAGTAGTGCCATAGGCGACACAAGACATATCA
CACCCCCCGTACCGATTTTCGAAGCTCGGTTTTTCTCCAGTGGATGGCGG
TGCCGAAAATGGCGGCGTTGGAACCGTCTCGTTGAGAGCTTTCCGTTTAA
CGTATCGTTTGATGTCGTACATTATCCTCTTCGTGGTGGCGTGACTGAAA
GTAAGTCCAGGGGATGTGGTAGCTGTTGTCGCCGACGGTAGTATGTAGTA
GATTCCTTCGCGTGCCGTGCTCGTTGCTGGTGTCGACAGCAGGGGTGAAG
GTTATTTTCCGACATTGTGGCGTTCCGCAAGCGTGGAGTGTTCTAAGCTT
TTTTCTTGGCCCCGGCAGTGACCCCCCGTCCACTAATCTCGCAAGAGGGC
GGCGCCTGGTGCATGGAGACGTTGATGTGTTCTGGCAAGGTTTCCTCGTC
AAGGTTTCCCCGTCTCAGGTTGTAGTCAAGGTTTCCCCGTCAAGGTTAAG
GCTGCTTGTGGACTACCACGACAACGCGCGGTGATATTATTACAGACTGA
TCGACAGGAGGGCGGGAGAATGCTCTGTAAGAGTCAGGGTTGTGGTTTCC
AGGGGTGTGAGGCGCGGCCTAGCACGTCGTCACGGTTCACTTGGATCTGT
TGTTGCTGGATTAGTTGATATTTCTCTCTCTTGCCCTCCCTCCCCCCCCC
CCCCCTCTCTCTCTCTCCCTCTCTCTCGTCCTCTCTCCTTTCCTCCCTCT
GTGCCCCTCCCCCTCTCTTCATCTATCTCTCTCTCCCCCTTTCTCTTTCG
TGCCCTTGCAGGACATCTACCTGCTTCGGCACGACGGACCAGTGCAAGAC
CTAAAGTTTTCGCCCAGCGAGGTCGAAGACGTCAAGCTCGTGCCGATGCA
GGCGCTCAAGGAAGCTTACGAGGCCCAGGTTGGTCTGTCTATCAAAGTCC
CAAGCCAAATGTTAATGTTTCGCAGCGGTCTTTGACGCCATTTTTTTTTT
CACTGGCGATGGTAGAGGCCATGATCGGACCAGTTACGACGAACTTGCCG
TCCCAATCCTGTGAACCGTCGTTCCCGATCACCTAGAACCACGCGCGGCT
GCGTCTGTCCACACTCTCTCTTTCCCTCTCTCTCTCTCGGTCTCTCTCTC
TCTCCGCCTCTGTACCTTCTGAATGTTCTCGCCCTCTCTGTCTGCCTGTC
TGCCTGTCTCTCTGTCCCTCTGCCTGTCTGTCCCTCGCCCCCCCTCTTCA
CTCTCTCGATTTCCCGGCACCACTAGGACCCAACGTACATCCCGCGACCG
GATTACTACGTCGAGCCCCTCTTCAAGGCGTTGGGAGAAGCCCTCTAGGA
CCCCCAACGTTGGTGCCCACACCTCACCGTTGCCGTGACACACGACGATT
GATTGCGTAGGGCCCGCGCTCACGAACCTCTGATTTTTGCCGAGGCTCGT
TTCTTACGTTGTCTACGAGGTACTGGACTGTACCCCGACGGCGACTATGT
TGGCCTTGGTTTGACTGACGATATTGGTGTTTGTGTAGGCTTCTTGGCTG
AGTACATGTTCTTTTAGGCCAAGTTCTCCTCTCTTGGGAATTTTGAGGCT
CAAGTTCTTAACCACCGCGTTTTTTCTTTAAGTGAGGTCCGGTTCTGTAC
GAGGAGCAATTGTTACACGTGAGGGAACCGGAGTTCCTTCGGAGGGTTGA
CCTCCCTTGGGCAGACGTCCCTCTGCACCCCTCCGAAGCCAGGCGGAGTA
GAGGGTATTTCTTGCTCTTGTTTGGGCCACAGAATGACTTTGATTTTGTC
GATACGAACTACTAGGGAGGTGAGATTTGTTGAATCACAATGTAGGCGCC
ACGAGGACTGGTCGCCGTGGAGGTGCTCGGTTTACGCCGTTGAGATCGCA
TGACGAGCTCTACGACCCGGCCGCCGTTATGTCATTTTCCGTGGCGTCGT
GTGCAACCATATAGAAACGGAGCGCCGCAGTCACGTGCCATCCGAAACCT
AGGTCCTAGTCTATAGATGGCTCCTCCATTTTTTTGCTCCAGGCTCCGCA
CCATGACACCTAAACACCCTGCTCGCGTGGCTCAGCAAGCGCCTCTCCTT
TTCGAATGTCTCCCACAAATTGGTGGAGACGGGTGAAGCGATCGTTTTGC
TAAAAGTAGATGACAAGTCCTGTGCAGGCCGGCATGCCTGTGGGTGTAAA
GCACGGATCTGTCAATGATTAGGTCATCGTGTTGGTACGAGCAGATGGTC
AGTCCTGTGGAGGACGGCATGCCTGTGGGTGTAAAGCACGGATCTGTCAA
TGATTAGGTCATCGTGTTGGCACGAGTAGATGGCCAGTCCTGTGCAGGAC
GGCATGCCGGTGGGTGTAAAGCACGGATCTGTCAATGATGAGGTCATCGT
GTTGGTACGAGCATATGACCAGTCTTGTGCAGGACGACATGCATGTGGGT
GTACATCACGTATCTGTCAATGATGAGGTCATCATGTTGCTACAAGTAGA
TGGCCAGTCCTGTGCAGGACGGCATGCCTGTGGGTGTAGAGCACGGATCT
GCCGAAGGAGTCGAGAAGCACGCATGGACCCCGTAGCCAAGAAGGGGACC
AGATCAGTTGGAAAATACAACGCAGTTAGCGAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:76977..81909+

>mRNA_Ecto-sp6_S_contig98.18744.1 ID=mRNA_Ecto-sp6_S_contig98.18744.1|Name=mRNA_Ecto-sp6_S_contig98.18744.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=723bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:76977..81909+ (Ectocarpus species6 EcLAC_371)
ATGAGACTCCCGGGTGCCGCGGCCAATCACCAAGCTCGGGCCTACCGTCA
TGCGGCGGCGAGAAGAGGGAAAGAGAGCGGGGCGGGGTCTCTGCTGTCTT
CTGCCGTGGAGGACGAAGTGGAGGTTGGGCAGGATTCTGGGGAGATGTTT
GACGTCTTCTTGCCGCCGGAGGGTGGATCCCTCTCGGTGCTCAGCGAGCC
CCCGCGGCCGGCGGGCTTCCGCAAGGCCAGGGGTCTCGTGCACGCCGACG
GTGACTGGCACAGGAGCGTGCACATATGGCTGCACAACTCCAAGGGCGAG
CTGGTGCTGCAGAAGCGGTCGTCCTCGAAAGATACGTTTCCGGGGATGTG
GGACGTTAGCGTGGGCGGGCACTTCACGGCAGGGGAAGAGAGCCTGGAGA
CGGCCATCAAGGAGACCAACGAGGAGCTGGGCTTGAGCTGCGACGAGAGC
AGCCTGCGCTTCGTGTGCACGGTGGCCACCACAGCCAAGGGGAGCACCGA
CATGCACGGCGACTTCGTCTGCAACGAGTACAAGGACATCTACCTGCTTC
GGCACGACGGACCAGTGCAAGACCTAAAGTTTTCGCCCAGCGAGGTCGAA
GACGTCAAGCTCGTGCCGATGCAGGCGCTCAAGGAAGCTTACGAGGCCCA
GGACCCAACGTACATCCCGCGACCGGATTACTACGTCGAGCCCCTCTTCA
AGGCGTTGGGAGAAGCCCTCTAG
back to top