mRNA_Ecto-sp6_S_contig98.18742.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18742.1
Unique NamemRNA_Ecto-sp6_S_contig98.18742.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig98.18742.1 vs. uniprot
Match: D7G0X6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X6_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 3.200e-42
Identity = 66/73 (90.41%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:    1 MHALTSFLFVGSTPTSCLSSCSLQHFSPNTLQRAYDQHDFLSVAFTALPLGRGHGWWSRRLCSRCDPGCQLSG 219
            MHA TSFLFV STP SCLSSCSLQHFSPNTLQRAY +HDFLSVAFTALPLGRGHG WSRRLCSR DPGCQLSG
Sbjct:    1 MHARTSFLFVESTPPSCLSSCSLQHFSPNTLQRAYHEHDFLSVAFTALPLGRGHGCWSRRLCSRYDPGCQLSG 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0X6_ECTSI3.200e-4290.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:61451..64367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size222
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_001930.1
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350601.6479685-CDS-Ecto-sp6_S_contig98:61450..616291682350601.6479685-CDS-Ecto-sp6_S_contig98:61450..61629Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 61451..61629 +
1682350601.6589465-CDS-Ecto-sp6_S_contig98:64324..643671682350601.6589465-CDS-Ecto-sp6_S_contig98:64324..64367Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 64325..64367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18742.1prot_Ecto-sp6_S_contig98.18742.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 61451..64367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18742.1

>prot_Ecto-sp6_S_contig98.18742.1 ID=prot_Ecto-sp6_S_contig98.18742.1|Name=mRNA_Ecto-sp6_S_contig98.18742.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=74bp
MHALTSFLFVGSTPTSCLSSCSLQHFSPNTLQRAYDQHDFLSVAFTALPL
GRGHGWWSRRLCSRCDPGCQLSG*
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mRNA from alignment at Ecto-sp6_S_contig98:61451..64367+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18742.1 ID=mRNA_Ecto-sp6_S_contig98.18742.1|Name=mRNA_Ecto-sp6_S_contig98.18742.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2917bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:61451..64367+ (Ectocarpus species6 EcLAC_371)
ATGCATGCACTCACGTCGTTTCTTTTCGTTGGATCCACGCCTACCTCCTG
CCTATCCTCCTGCTCCTTGCAACATTTCTCTCCGAACACGCTGCAACGAG
CCTACGATCAACATGATTTCCTAAGTGTGGCTTTCACCGCTCTTCCTCTT
GGTCGAGGGCATGGGTGGTGGAGCCGAAGGTGAGCGAGACAGAGCAGACA
CTCGTTTTTTTTTTTACGTCGGTGACCTTTTCTCCACGACAAAAGACGGC
CTTACGATATGCGAGTGTGTACGTATTCATGCAGGTCCTTCAATGAGGCG
ACAGTCGAAACCTCTTGTTTGGCATTGCTCTTGGATAGAGAGAGCCACAC
ACAGCTACTGCCGGCAAAGGGTATTGTCATTTTGGATCTGCCACAAGGGT
TTATTTGAACCTGATGAATGTGGGCGCTCGTTCGTCTACACATACGTCTT
CCTGAGCAGGGAAACCAATGCCACGCCCACCTGAATCAGACACCATGTGT
ACGGTCATGCCATCCATTCTCCCCAGGAGTGCTCCAGCCCAACCCTCAGC
TCTCGCGCGGCGTTGATCATCGTTAGCTGAGTAGGTCATGTTCTTGAACC
GTGTACCTCCCGTCCAAAGAACAGTCATCAGAAAATGCTTCGGCGGTGAG
ATTGTGGACAGCGGAGCCTGGTCCAACAACACACGCTGGTATACTGCCGC
ACTCTCATCCTGACCGACAATCCTTGATTACCTACTACCCTGTTGCCTCT
GGAAGAGGTTGTCTGTTACACGTGTCTAGGGGCAGGATGGGTGCAAGTGA
ATACTTGGACACCAACGCATCGTACAGAGCGGGTTATCTTCATAGACAGA
TCCCGGCAACGAAAAAAGTAAAACCAATGGCGGTATGTACTGCTAAGCTG
AGCGGAGAGAGGCGTAACAAGCCGAAACACGTTCCTGAAGGAAACAGAGC
ACAGGTGCGTTTTTGCTTGCTCGGTGGACCGAAGCCACCAACTAAATTTT
TATTAAATATCCGCCACCATACGCCCTCCACACCATCGGGCACCCTCCCA
CACTTGCCAAAGCTGCCCACGTCTCTATCTTTTCGGTAATGGAGTGATAT
TCGGCGTGGGCCTTTCAACGGAAGACGTAGGCAAAGTAATGGCCCTGGCT
CACTAGATTAAACGTCGCCCCGTAGTGGGTAACCACGTATGCATAAACAT
TCTTTTAGCAGCAGTTCGATTCTCTCTCTACTCTGCAGAATAAAGCAATT
GGTATCGTAGCTTGCCTCGGGCAATCGTGCTGGTCCTCTACGAGTTTCGT
TATTTAGTACCATATCTCGTTTCCAATAGACGTTGCAACCGCGGGTATTC
AGTTGACCTTGACCCTTTCTGGGTCTTCATTCGCATATGCTGGTGTGTTG
CCATGCCATGGAGTTGCCACCCTGAATCCGTTCATGCCAGGTGTTGGCAA
GTCCATAGGTATGTGTTGTTGTAGCATCGACCGAGCTCACCGGCGACCGA
CCAAAAGCCGTCCGTGCCAGCGGGTAAAATCAAGGTCCCTGGCATGGGAC
CAAATTCGCAAAATGCATACGCTAAATGCGAATGCCACAGTTAGTCTCTC
TATCAATGTAACTATCCTTTCACGGAGACACACATCAAAGCTCCACATAC
ATACATTCCCTCGCCCAAATCTATGAAGACACTGAATGCAACGAGCGGAG
GGCAGCAAAACGGGCGTTTCAAGCCCAGCCAAGCCAGGATATCCTGGTAT
GCTTCATCTCCAAAATTGATAATCGTGTAATCGTATACTCCCAACATCCA
GGAGTCATCGTGTCAGGAGCTACACTACACAGCAGCTGCTGCAGAGCACC
ACGGGCACGACACGACCGCTCATCCCAGTTGAAACCACGGGCACGACCAC
TCATCCTAGTCAAAAGCGAAGAGTGTCCCCACTCGTGTGCAGGTACACCG
AGAGCAGTACAGAATGGCAAAGCCGATTTCAAACATGATCCAACTTTTTT
GTCGAAGGGGCCGCCGACAAACATATACAAGCACGCGCGAATACCAAGAA
CAAATTATGTTTCCGTCCAAACACGGCGAAATAATCTATCGCGGAGCACG
TGGCAGCGGTGTGCCCCGAACCTCTCCTTGGCAGGCATGTCCTGGCCTCG
AAGCGGGAACCACGACGCAGTATCAATGTAGGACAGCGGGGCTTCAATTT
CATTTCAGGTGAGCAACTATTCGCGCAAACATGTCGAGATCGGAGATATA
CCACCGTACGATGGATTGATGTGTTCCGACAAGAAGCCAAGAACAATTAT
GCACGCGCGCGCAAAAAATGCAAGTGTCAAAGACGTACAACAGTAGTACA
AAGCGCATCGGTACATTCCCCAACTTTCATCACATAGAAGGTCAAGATAT
GGTCAAATAAGCCGACAACGAAAATACATGCGCACGTAAGAACAAATAAT
GTAACGATCGAAACCCGGCGGGAAATCAGCCTTCGCGGGGCAGGTGACAG
AGGTCTGTCGTTGGCAGGCTACTACCGGGTAGAAAGGCAACAACTATACG
CACGCACAAATTGGTTGAGATCGGAGTTGTTGTACAATGGATGCATGGAT
GGATGTGCTCCGACGAAGAAAAGAGAGATTCGAGCCACCAATCATCAAGT
TTGTCAAGTTGTTGGAGTGCGTGCGAAACGCGGCGGAACATGCTTCCGCG
TCGGGAGGTTGCAGCGGGGCCCGAACCTTTCGTTGGCAGCCAAACTTTGA
CGGTCTCCTAGAGGAAATGCGGTAAACACCGCGCGAGCACTCACGTGGAT
ACATGATCCAGTACGTTACTGCTGACTGAAAGCGCGAAGTTTGCTTAGCT
TGTCTTCTTCGTCCCGCGCAACAGGCTTTGTTCCAGATGTGACCCTGGGT
GCCAGCTATCCGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:61451..64367+

>mRNA_Ecto-sp6_S_contig98.18742.1 ID=mRNA_Ecto-sp6_S_contig98.18742.1|Name=mRNA_Ecto-sp6_S_contig98.18742.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:61451..64367+ (Ectocarpus species6 EcLAC_371)
ATGCATGCACTCACGTCGTTTCTTTTCGTTGGATCCACGCCTACCTCCTG
CCTATCCTCCTGCTCCTTGCAACATTTCTCTCCGAACACGCTGCAACGAG
CCTACGATCAACATGATTTCCTAAGTGTGGCTTTCACCGCTCTTCCTCTT
GGTCGAGGGCATGGGTGGTGGAGCCGAAGGCTTTGTTCCAGATGTGACCC
TGGGTGCCAGCTATCCGGGTGA
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