mRNA_Ecto-sp6_S_contig97.18733.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig97.18733.1
Unique NamemRNA_Ecto-sp6_S_contig97.18733.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18733.1 vs. uniprot
Match: D8LL88_ECTSI (Rab32B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL88_ECTSI)

HSP 1 Score: 879 bits (2270), Expect = 3.440e-312
Identity = 536/570 (94.04%), Postives = 540/570 (94.74%), Query Frame = 1 
Query:    1 SPAPSPEPTLDNTKAASIMPMRLDALTIAGLTGTPHGGGGGGFAGREMAAPGSPAAGSDATLSSIQDSSCGGDGGDVGDGDGSASVLSDDLGSVTFTDDSGTTAEGEGEDSDSSGCDGSGGVVEAARTGPLWDGEVKGGSTAGXXXXXXXXXXXXEERGQRERGGRGPAPAEAAAGGDSAGPARPARYHPTEVAGATDNSGGALSSPASHRAAPSPDSSLPPLSPRKGGPQLGHATTLPATGASHPNQRATDPDASTXXXXXXXXXXXXSHQQDPDSSRAEGILGDSGINKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGVVPTVTCKVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVSLENGRQVRLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWKEEIDLWCQNEGCDLPVYLFANKCDLLKEVQDSFLAGARMEKTCRDAGFAGWHITSAKRGDNIDAAMTSLVEHALEAEDRRNRGPEVASPSRDGRGVGGAKGGAFRLSCEGRREGVQQAGPCCA 1710
            SPAPSPEP+ DNTKAASIMPMRLDALTIAGLTGTPHGGGGGGFAGREMAAPGSPAAGSDATLSSIQDSSCGGDGGDVGDGDGSASVLSDDLGSVTFTDDSGTTAE EG DSDSSGCDGSGGVVEAA+TGPLWDGEVKG STAGXXXXXXXX    EERGQR+RGGR PAPAEAAAGGDS GPAR AR HPTEVAGAT+NSGGALSSPASHRAAPSPDSSLPP SPRKGGPQLGHATTLPATGASHPNQRATD DAST            SHQQDPD SRAEGILGDSGINKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGVVPTVTCKVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVSLENGRQVRLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWKEEIDLWCQNEGCDLPVYLFANKCDLLKEVQDSFLAGARMEKTCRDAGFAGWHITSAKRGDNID AMTSLVEHALEAEDRRNRGPE ASPSRD RGVGGAKGGAFRLSCEGRREGVQQAGPCCA
Sbjct:    3 SPAPSPEPSPDNTKAASIMPMRLDALTIAGLTGTPHGGGGGGFAGREMAAPGSPAAGSDATLSSIQDSSCGGDGGDVGDGDGSASVLSDDLGSVTFTDDSGTTAEREGGDSDSSGCDGSGGVVEAAKTGPLWDGEVKGESTAGXXXXXXXXAA--EERGQRDRGGRWPAPAEAAAGGDSTGPARAARDHPTEVAGATENSGGALSSPASHRAAPSPDSSLPPASPRKGGPQLGHATTLPATGASHPNQRATDLDASTTTLRPLSQQRRRSHQQDPDDSRAEGILGDSGINKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGVVPTVTCKVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVSLENGRQVRLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWKEEIDLWCQNEGCDLPVYLFANKCDLLKEVQDSFLAGARMEKTCRDAGFAGWHITSAKRGDNIDTAMTSLVEHALEAEDRRNRGPEGASPSRDRRGVGGAKGGAFRLSCEGRREGVQQAGPCCA 570
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BLAST of mRNA_Ecto-sp6_S_contig97.18733.1 vs. uniprot
Match: A0A836CPW2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPW2_9STRA)

HSP 1 Score: 259 bits (663), Expect = 6.840e-72
Identity = 118/170 (69.41%), Postives = 143/170 (84.12%), Query Frame = 1 
Query: 1042 PTVTCKVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVSLENGRQVRLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWKEEIDLWCQNEGCDLPVYLFANKCDLLKEVQDSFLAGARMEKTCRDAGFAGWHITSAKRGDNIDAAMTSLV 1551
            PTVTCKVLVVGNAKCGK+SII R+V  RF+S+Y +TVGADY  KDV   +G  VRLQLWDIAGQDRFA+LTRAYFRRA+ AVVVCD+TREGT++A+ RWK+E+D+WC  EGC +PV+L ANKCDLL + Q+SFL GA+MEKTCR+  F  W+ITSAK GDNI  AM++L+
Sbjct:  361 PTVTCKVLVVGNAKCGKTSIIQRYVHGRFTSEYTTTVGADYLKKDVLAPDGTCVRLQLWDIAGQDRFARLTRAYFRRARAAVVVCDITREGTYEAVSRWKDELDVWCTTEGCKIPVFLIANKCDLLTDAQESFLMGAKMEKTCREKNFEAWYITSAKGGDNIATAMSNLL 530
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BLAST of mRNA_Ecto-sp6_S_contig97.18733.1 vs. uniprot
Match: W7U2E0_9STRA (Rab gtpase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2E0_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.420e-59
Identity = 105/178 (58.99%), Postives = 129/178 (72.47%), Query Frame = 1 
Query: 1039 VPTVTCKVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVSLENGRQVRLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWKEEIDLWCQNEGCD--LPVYLFANKCDLLKEVQDSFLAGARMEKTCRDAGFAGWHITSAKRGDNIDAAMTSLVEHALE 1566
            VP   CK+LVVGNAKCGK+S+I RFV   F + Y STVGADY  +DV L++GR VRLQLWDIAGQDRF  LTR YF RAKG +VVCD+TRE TF+A+  WK EID W + EG +  +PV L ANKCD+L +  DSF+AGA M   C +  FA W++TSAK G N++ A   LVE A++
Sbjct:  227 VPVSICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMD 404
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BLAST of mRNA_Ecto-sp6_S_contig97.18733.1 vs. uniprot
Match: A0A8K1FMK4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMK4_PYTOL)

HSP 1 Score: 185 bits (470), Expect = 1.220e-48
Identity = 93/192 (48.44%), Postives = 125/192 (65.10%), Query Frame = 1 
Query: 1048 VTCKVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVSLENGRQVRLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWKEEIDLWCQ--NEGCDLPVYLFANKCDLLKEVQDSFLAGARMEKTCRDAGFAGWHITSAKRGDNIDAAMTSLVEHALEAEDRRNRGPEVASPSRD 1617
            V  KVLVVGNA+CGK+S I RFVS +FS  Y ST+GAD+  K +  ++  ++ LQLWDIAGQDRFAKLTRAYFR AKGA++VCD+TR  T DA+  WK E+D+ C+  N G  +PV + ANK DLL++   +   G  M+K+    G   W   SAK G++ID A   L+E  ++A  ++ R  +   P  D
Sbjct:   94 VIFKVLVVGNARCGKTSTIRRFVSKQFSDHYVSTIGADFVEKVIDYDDSLRLHLQLWDIAGQDRFAKLTRAYFREAKGALIVCDITRANTIDAVETWKNELDVCCKDLNHGETIPVVMLANKSDLLQDPLSALNLGVNMQKSVTRNGIVEWFRASAKSGEHIDEAFQCLIEQMVQAHRQQKRDTKETHPLDD 285
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18733.1 vs. uniprot
Match: K3X7B8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7B8_GLOUD)

HSP 1 Score: 186 bits (471), Expect = 2.730e-48
Identity = 93/176 (52.84%), Postives = 120/176 (68.18%), Query Frame = 1 
Query: 1045 TVTCKVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVSLENGRQVRLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWKEEIDLWCQ--NEGCDLPVYLFANKCDLLKEVQDSFLAGARMEKTCRDAGFAGWHITSAKRGDNIDAAMTSLVEHALE 1566
            TV  KVL+VGNA+CGK+S I +FVS +FS +Y ST+GAD+  K +  +   ++ LQLWDIAGQDRFAKLTRAYFR AKGA++VCD+TRE T DAIV WK EIDL  +  N+G  +PV + ANK DLL +   +   G  M+K     G   W  TSAK GD++D A   L++  +E
Sbjct:  123 TVIMKVLIVGNARCGKTSTIRQFVSKQFSENYVSTIGADFVEKIIEYDAQLKISLQLWDIAGQDRFAKLTRAYFREAKGALIVCDITRENTIDAIVNWKSEIDLCSRDLNDGESIPVVMVANKSDLLDDPVGALNIGVNMQKCVVKNGIVEWFRTSAKNGDSVDDAFKCLIDRMVE 298
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18733.1 vs. uniprot
Match: A0A2D4BRT2_PYTIN (Rab32/38 family GTPase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRT2_PYTIN)

HSP 1 Score: 184 bits (466), Expect = 1.510e-47
Identity = 92/175 (52.57%), Postives = 119/175 (68.00%), Query Frame = 1 
Query: 1048 VTCKVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVSLENGRQVRLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWKEEIDLWCQ--NEGCDLPVYLFANKCDLLKEVQDSFLAGARMEKTCRDAGFAGWHITSAKRGDNIDAAMTSLVEHALE 1566
            V  KVLVVGNA+CGK+S I RFVS  FS +Y ST+GAD+  K V  ++  ++ LQLWDIAGQDRFAKLTRAYFR AKGA++VCD+TRE T DA+V WK EID+ C+  N G  +PV + ANK DLL++   +   G  M+K   + G   W   SAK G+++D A   L+   +E
Sbjct:  136 VIMKVLVVGNARCGKTSTIRRFVSKDFSDEYVSTIGADFVEKVVDYDDNLRLHLQLWDIAGQDRFAKLTRAYFRDAKGALIVCDITRENTIDAVVTWKSEIDVCCKDLNHGEVIPVVMVANKSDLLQDPMGALNIGVNMQKCVVNNGIVEWFRASAKSGEHVDDAFQCLINRMVE 310
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18733.1 vs. uniprot
Match: H3GIE7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GIE7_PHYRM)

HSP 1 Score: 181 bits (459), Expect = 9.350e-47
Identity = 92/195 (47.18%), Postives = 123/195 (63.08%), Query Frame = 1 
Query: 1039 VPTVTCKVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVSLENGRQVRLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWKEEIDLWCQ--NEGCDLPVYLFANKCDLLKEVQDSFLAGARMEKTCRDAGFAGWHITSAKRGDNIDAAMTSLVEHALE-----AEDRRNRGPEVA 1602
            V TV  KVL+VGNA+CGK+S I RF  + F+ +Y ST+GAD+  K +  ++   + LQLWDIAGQDRFAK TR YFR AKGAV+VCD+TR  T DA+V WK EID  C+  NEG ++PV L ANK DLL +   +   G  M+K         W   SAK G+++D A   L++  +E      E+R++  P+ A
Sbjct:  126 VETVIMKVLIVGNARCGKTSTIRRFTRDDFNEEYVSTIGADFVEKVIEYDDQLTISLQLWDIAGQDRFAKFTRGYFREAKGAVIVCDITRANTIDAVVTWKNEIDTCCKDLNEGAEIPVVLVANKSDLLTDPMGALDLGVNMQKCVDKNNIVEWFRASAKSGEHVDDAFQCLLDRMVEDHRTGKEERKSESPDDA 320
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18733.1 vs. uniprot
Match: A0A5D6Y1Q7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1Q7_9STRA)

HSP 1 Score: 179 bits (455), Expect = 6.860e-46
Identity = 92/172 (53.49%), Postives = 115/172 (66.86%), Query Frame = 1 
Query: 1045 TVTCKVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVSLENGRQVRLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWKEEIDLWCQ--NEGCDLPVYLFANKCDLLKEVQDSFLAGARMEKTCRDAGFAGWHITSAKRGDNIDAAMTSLVE 1554
            TV  KVLVVGNA+CGK+S I +FVS +FS  Y ST+GAD+  K +  +   ++ LQLWDIAGQDRFAKLTRAYFR AKGA++VCD+TRE T DA+  WK EID   +  N G  +PV + ANK DLL +V  +   G RM+K     G   W   SAK GD++D A   LV+
Sbjct:  152 TVIMKVLVVGNARCGKTSTIRQFVSRQFSESYVSTIGADFVEKVIEYDAQLKISLQLWDIAGQDRFAKLTRAYFRDAKGALIVCDITRENTVDAVTTWKREIDACARDLNGGEPVPVVMVANKSDLLDDVVGALNIGVRMQKCVASNGILEWFRASAKSGDSVDDAFQCLVD 323
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18733.1 vs. uniprot
Match: A0A6A3QRQ1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3QRQ1_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.310e-45
Identity = 86/176 (48.86%), Postives = 113/176 (64.20%), Query Frame = 1 
Query: 1045 TVTCKVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVSLENGRQVRLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWKEEIDLWCQ--NEGCDLPVYLFANKCDLLKEVQDSFLAGARMEKTCRDAGFAGWHITSAKRGDNIDAAMTSLVEHALE 1566
            TV  KVL+VGNA+CGK+S I RF  + F+ +Y ST+GAD+  K +  +    + LQLWDIAGQDRFAK TR YFR AKGAV+VCD+TR  T DA+V WK EID  C+  N G ++PV + ANK DLL +   +   G  M+K         W   SAK G+++D A  SL++  +E
Sbjct:  131 TVIMKVLIVGNARCGKTSTIRRFTQDEFNEEYVSTIGADFVEKIIEYDEQLTISLQLWDIAGQDRFAKFTRGYFREAKGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNGGAEIPVVMVANKSDLLMDPMGALDLGVNMQKCVDKNNIVEWFRASAKSGEHVDNAFQSLIDRMVE 306
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18733.1 vs. uniprot
Match: A0A662X9X8_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9X8_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.780e-45
Identity = 88/178 (49.44%), Postives = 113/178 (63.48%), Query Frame = 1 
Query: 1039 VPTVTCKVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVSLENGRQVRLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWKEEIDLWCQ--NEGCDLPVYLFANKCDLLKEVQDSFLAGARMEKTCRDAGFAGWHITSAKRGDNIDAAMTSLVEHALE 1566
            V TV  KVL+VGNA+CGK+S I RF  +RF  +Y ST+GAD+  K V  ++   + LQLWDIAGQDRFAK TR YFR AKGAV+VCD+TR  T DA+V WK EID  C+  N G ++PV + ANK DLL +   +   G  M+K         W   SAK G++I  A   L++  +E
Sbjct:  131 VETVIMKVLIVGNARCGKTSTIRRFTQDRFCEEYVSTIGADFVEKLVEYDDRLTISLQLWDIAGQDRFAKFTRGYFREAKGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNAGAEIPVVMVANKSDLLVDPMGALDLGVNMQKCVTKNNIVEWFRASAKNGESIGEAFQCLIDRMVE 308
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL88_ECTSI3.440e-31294.04Rab32B, RAB family GTPase n=2 Tax=Ectocarpus TaxID... [more]
A0A836CPW2_9STRA6.840e-7269.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7U2E0_9STRA1.420e-5958.99Rab gtpase n=1 Tax=Nannochloropsis gaditana TaxID=... [more]
A0A8K1FMK4_PYTOL1.220e-4848.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X7B8_GLOUD2.730e-4852.84Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BRT2_PYTIN1.510e-4752.57Rab32/38 family GTPase, putative n=1 Tax=Pythium i... [more]
H3GIE7_PHYRM9.350e-4747.18Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A5D6Y1Q7_9STRA6.860e-4653.49Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6A3QRQ1_9STRA1.310e-4548.86Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A662X9X8_9STRA1.780e-4549.44Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig97contigEcto-sp6_S_contig97:542671..550572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score861.3
Seed ortholog evalue2.5e-247
Seed eggNOG ortholog2880.D8LL88
Model size2781
KEGG koko:K07918
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.BLOC-2 complex binding
EggNOG OGsKOG4423@1,KOG4423@2759
Ec32 ortholog descriptionRab32B, RAB family GTPase
Ec32 orthologEc-27_001690.1
Cds size1659
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig97.18733.1prot_Ecto-sp6_S_contig97.18733.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig97 543739..550518 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350600.1473787-UTR-Ecto-sp6_S_contig97:542670..5437381682350600.1473787-UTR-Ecto-sp6_S_contig97:542670..543738Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig97 542671..543738 -
1682350600.1982226-UTR-Ecto-sp6_S_contig97:550518..5505721682350600.1982226-UTR-Ecto-sp6_S_contig97:550518..550572Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig97 550519..550572 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350600.1568208-CDS-Ecto-sp6_S_contig97:543738..5438851682350600.1568208-CDS-Ecto-sp6_S_contig97:543738..543885Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 543739..543885 -
1682350600.164567-CDS-Ecto-sp6_S_contig97:544398..5444851682350600.164567-CDS-Ecto-sp6_S_contig97:544398..544485Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 544399..544485 -
1682350600.17477-CDS-Ecto-sp6_S_contig97:545894..5460321682350600.17477-CDS-Ecto-sp6_S_contig97:545894..546032Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 545895..546032 -
1682350600.182373-CDS-Ecto-sp6_S_contig97:548084..5482251682350600.182373-CDS-Ecto-sp6_S_contig97:548084..548225Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 548085..548225 -
1682350600.1901414-CDS-Ecto-sp6_S_contig97:549372..5505181682350600.1901414-CDS-Ecto-sp6_S_contig97:549372..550518Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 549373..550518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig97.18733.1

>prot_Ecto-sp6_S_contig97.18733.1 ID=prot_Ecto-sp6_S_contig97.18733.1|Name=mRNA_Ecto-sp6_S_contig97.18733.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=553bp
MPMRLDALTIAGLTGTPHGGGGGGFAGREMAAPGSPAAGSDATLSSIQDS
SCGGDGGDVGDGDGSASVLSDDLGSVTFTDDSGTTAEGEGEDSDSSGCDG
SGGVVEAARTGPLWDGEVKGGSTAGGGGGGGGGAIAAEERGQRERGGRGP
APAEAAAGGDSAGPARPARYHPTEVAGATDNSGGALSSPASHRAAPSPDS
SLPPLSPRKGGPQLGHATTLPATGASHPNQRATDPDASTTTLPPPAQQRR
PSHQQDPDSSRAEGILGDSGINKSSNSSNNDNQRRLLRGGSGTASTAVAT
AVSGADSGGGGVSAAPPPAAAEPPRGGVVPTVTCKVLVVGNAKCGKSSII
SRFVSNRFSSDYNSTVGADYAMKDVSLENGRQVRLQLWDIAGQDRFAKLT
RAYFRRAKGAVVVCDVTREGTFDAIVRWKEEIDLWCQNEGCDLPVYLFAN
KCDLLKEVQDSFLAGARMEKTCRDAGFAGWHITSAKRGDNIDAAMTSLVE
HALEAEDRRNRGPEVASPSRDGRGVGGAKGGAFRLSCEGRREGVQQAGPC
CA*
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mRNA from alignment at Ecto-sp6_S_contig97:542671..550572-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig97.18733.1 ID=mRNA_Ecto-sp6_S_contig97.18733.1|Name=mRNA_Ecto-sp6_S_contig97.18733.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7902bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:542671..550572- (Ectocarpus species6 EcLAC_371)
AGCCCGGCGCCGAGCCCTGAACCAACCCTGGACAACACCAAGGCGGCCTC
GATAATGCCCATGCGACTCGACGCCCTTACAATCGCGGGCCTGACGGGAA
CACCTCACGGTGGTGGGGGCGGCGGGTTTGCCGGGCGAGAGATGGCTGCC
CCCGGCTCCCCCGCTGCCGGCTCCGACGCCACGCTGAGCTCCATCCAAGA
CTCGTCCTGCGGCGGCGACGGCGGCGATGTGGGCGATGGCGACGGCAGTG
CCTCGGTGCTGTCGGATGATCTCGGGTCCGTCACGTTTACCGACGACAGC
GGTACTACTGCTGAGGGGGAGGGAGAGGACAGCGATAGTAGTGGTTGTGA
CGGTAGTGGTGGTGTTGTTGAAGCTGCGAGGACTGGTCCGCTTTGGGATG
GTGAGGTGAAGGGGGGATCTACGGCAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGCAATCGCAGCAGAGGAGCGGGGGCAGCGGGAAAGGGGAGGGCGTGG
GCCAGCGCCAGCAGAAGCAGCTGCAGGAGGAGACAGCGCTGGACCGGCGA
GACCAGCACGATACCACCCTACAGAGGTCGCCGGGGCAACTGATAACAGC
GGCGGTGCCTTGTCGTCGCCGGCTTCCCATCGTGCCGCGCCAAGCCCCGA
CTCGTCCCTGCCTCCTCTTTCGCCGAGAAAGGGTGGACCACAACTGGGAC
ACGCAACAACGCTCCCGGCCACGGGTGCAAGCCACCCTAACCAAAGGGCC
ACCGATCCAGACGCCAGCACCACCACCTTACCACCTCCGGCACAACAACG
ACGACCGTCACATCAACAGGATCCCGACAGTAGCCGAGCTGAGGGCATCC
TCGGCGACTCCGGCATCAACAAAAGCAGCAACAGCAGCAACAACGACAAC
CAGCGTAGATTATTGCGCGGCGGCTCGGGTACTGCTAGTACTGCCGTCGC
CACCGCCGTGAGCGGCGCTGACAGCGGGGGCGGAGGCGTTTCTGCTGCCC
CGCCACCGGCGGCGGCAGAGCCGCCACGCGGCGGCGTAGTGCCGACGGTG
ACCTGCAAGGTTCTCGTGGTCGGGAACGCCAAGTGCGGCAAGTCGTCCAT
CATCAGCCGGTTCGTGAGCAACCGTTTCAGCTCGGACTACAACTCCACCG
TTGGGGCGGACTACGCCATGAAGGACGTTTCCCTCGAGAATGGACGACAG
GTGTGCGTGTTTGTGTGCGTGTGTGTGTGTGTTTATTGTTGGAATCGGCC
GCGCTAACCGGCTGACCAATGAAAAGAGGCCAGCCTCAGTGCGGTTTGTG
TGTGTGCGTGTGTGTGCGTGTGTGTGCGTGTGTGTGCGTGCGTGTTTTGT
GTTTGAATTGGCATCGATCGCGCTGCAGCCGGATGACCAATTAATATACG
CCAGTCATATATATTACGGGAAAAAACGCAAAAACGCTTTCATAGTCAAA
GGGTTCTACCCACAGGCAGGAGGGGCGTAGGAGTTGTGTGTGTGTGTGTG
TGTGTTTTTTTTTTTCAATAGCATCTACCGCGCTAGCTGGCTGACCAATA
AAAACACGACAGTCTTCGAGACAAAGAAAAAACGATGTCACGCTTTCTAA
GCAAAAAAGGTTCTACCGACTGGGGGGGTGCAGGAGTAGGACGACAGCAA
GGTGTCCTTCCTGCTTATTGAGCCTGTGGGCCTCGTGGTTTGTGGGTACA
GTATCATCGACCCAGTCGTGGCTCCGATGTGTAAGAGGGTGTCGTGTAAC
AGGAGGCTCCGACATGAGAGGGTCGAAATAGGAAATAGGGTGCCACGGAA
CTCGACCCTCTATTGTAAAGTTGGTTACATATCCTCTTATTCCGGTGTAC
GAGGGTCGAGGGCCATTGTCACACCACCCTCTGATATCGGAGCCACCACC
GCTGTACGCTAGTGTCTTCCCTCTTTCTTTGCCACCGATCCGCTTTGCCC
GGCCGGCCGGCCGGCTGGCTGGTTGGCAGATGATGAATGCAGTCGTCTTC
GATGGATAGGTTGAATTGCGGTAGAACCCTATAGGCTCGATGCTGCCCTA
AACTATCACGGCTGTGGGTGTGGCGACCCTGTATGTTTTTTTGCTAATAC
TTCTTTACCGTCGACCGTGCTAACGCGTATGCATGTGTGTGTGTCACGTT
TGTCCGTGTTGGTGTATGAATTGCTCTGCTGTATCGCCAAATAGCAATTA
GAGGGGACTTGCTGGTGCTGGTGCTGTCGCTGTTACAGCAGCGTTTTTTA
TGCTGGCAGTGATCGATAATCCTGTCCTCCTCCTCTCGCCCTCGCCGCGA
CATGCTACATATACCCTCATCTGATGCTCGTTGATCTTGGTTTGCAGGTG
CGACTGCAGCTGTGGGATATCGCAGGTCAGGACCGGTTCGCCAAGCTGAC
GCGCGCCTACTTCCGACGAGCGAAAGGCGCGGTCGTAGTGTGCGATGTCA
CCCGCGAGGGAACCTTCGATGCAATCGTCAGGTGGAAGGTATAGTGCTGC
TTCCTTCCACGAGTACCCTGAGTATTCAAAGGAGTGTGAAAAGAACCTAA
AATGGCTTGCACCGGGGTAACCGACCCAGTTAGCAGAGTTTGCTGACATC
AGCTACTGCACAGGGGGGGGTGGGGGGTGTACTATTATGTTTTGCATGCC
TTAGCGGTTAGACCATTGACCACGCGTCCTCGAGAGGACGGAGCATTGTT
CCCACAGGACCGATCACCGATGGCCAATCGTTCCTTCCTACTTTGCCAAA
GGTGGCTCAAAAATGTCTTCCCTTGTCTGTCTATCCTACCGATATCCCTT
CCCGCCTTTTCAAATCACTTCCTACTCCCCAGTACAGCTACCGTCATTTC
CGCTCTATTCCATGCCTCCAACATCTCCCTGCACGTCCCTTGTATTTTTC
CCAGCTCAGTCATGTACACTTCCCTCTCCTCTTCGTACCACTGACATTCC
GCGACTACATGAACACGGTCTTCGCATTCGAAGCCGCAATCACATTTGAG
CTTGTCGTCTTCGTCGTCTACCGCCCTATGTCTTCGTCGACGTTCTCGAA
GGCCTATGTCCCCGGTCCTGAATTTGACCTTAAGCTTTGCCCCTGCATCC
ATTGGTCCATGTAGGTAATCCTTGAACCCTATTCCTTCTTTCGACATTCC
GTACACTTCTAGACCCTCCTTATCCTCGGTTTCTTTCCTTAGATTCTGTT
CTTCTCTCTCGGCACATGCAACAGATATCTTCGCCTTGAACCCCTTTAGA
CCCTCCGTTTCCAGCGTTTCATCTTCGTCGATGTCGAACCCCTTCCATAC
GTCCTCTACAACCTTGACCCTTTCCGAGGGTTGTCTACCCCTCTTTTTGT
TTGCCCACTTCGCCTCCCATACTGTTCTCGGCAACCTCTACTCTCCCATC
CCGCACATGCGATACTGCCATGTCAGCTTCCTTCCGTCTCTTCCCGACCG
TAGGGATTGGATCCCCAATTCTGCCCTGACGGCTGCATTACTTGTGCGCG
TGGAGCATCCTAGGATGAGTTTCGCTGCTTTCATCTTCGCCACCTCGAGT
TCTTTCACTACCTTCTTATTTCCTTTCCATACTTCTCCGGCGTACTCTAG
CGGCGGTACGAATACGCTCTTCAAAACCGCCAATTTGATGCGTGTATCGA
GGTGCCGGTTTGCGAGTATTGGGTGGGGGGGGGGTGTGTACTCATAGTCG
TGCATGCCGTAGTCGTTAGACCATTGACCTCGCATCCCTACAAAGCCGGG
ACGGAGCACGCCGGGTTCTCACCGGACCAGCCTCTCACATCACCAAGCGC
GAAGCGCCGTGAGGTATTCGGCGAGTCGCATGAAGGGTGCGCTGCATCCT
GCTAAGGGTGTTCGGCATCTTGTGCTTACTTCCTTGCGTACGTATGACAG
CTGCGTATGACTTAATTTATTTTCTGGTGCTTTCACTTCCAGAGACAGTT
GTAAGCACTGTGTAACTGCCTCGAGGATGCTTGATCATTTTAACACAACG
TGGTGCGATCATCCCCCTTACGCGGAGTGAGGGTTCTCGACCCCGCACAA
CATGATCTACTCGACCACCATTATGGTTACCCCCCAAAACAAAAACCGAG
TTAAAAAAGAAAAAAGGTAACCTGGTTGCCGAGTCCACTAAGTGAATTGG
CTTGTTTTAAAACGTCGTTGCCAAGCGACGAAAACCCAATCCCGATGGCA
AACACCGAGGGGGGGGTATTGGGTGGGTGGTTGGGGGGTTGTACACGGTG
TTGTCGCCACGCTCGTTGAAGTAGCGAGGTATTTGGAGATCCCCTTCATT
GGTTATAAAAGGGTATGTACGATCGCCCTAACGTCCGTCTGTGGAGGACG
ATTGATGTCCTCTTTGACAGCAGGGGGTAGGGTCGCTGTTGTCCCTTTTG
GGTGTGCGTGTGGCACCCTCTCGTTGCTCCGTTCTCTCGAGGGCGCGTGG
TCAACGGTCCAACAGCTCAGGCGTGAAAAGCATGAGTACCCCCCCACCCC
CCCTGCTCCCTTCCTCCGTGAACGCGCGATGAACGAATAGGAAGAGATCG
ACCTCTGGTGCCAGAACGAGGGCTGCGACCTCCCGGTTTACCTCTTCGCG
AACAAGTGCGACCTGCTGAAGGAGGTTCAGGACAGCTTTCTCGCGGGGGC
GAGGATGGAGAAGACTTGCCGAGACGCGGTATGTGTTATTCTTTTTTTTA
TCGTTCTGGTTTGTGTGTGATGACGTCTCGCTTTTGTTTAGACTCGTGTG
GCGCGGGTAGTCTCGCTGCTGTTAGCGGCCGAAGTTCTTTCGGCCAGACA
GCTTAACCGTTGAGTGTCAATCCTCTACTACTTTTTGCCGACGCCATCCG
CCGGCACATACAGCGAACACCCGCCCCGGGTCAAGACTCTGTTCTCATGA
CGAAGTTACCGCGTCGAAGCTTTATTGGCGTTGTCTGGTCCTGGGGGTAG
CAATCATTGTTTTCGGTATCCCTTACGCCCGTAGTCAAGGCATTCCTGTT
CCTAAAGCAAGCCGACGAATATCGTTGGCGTTGGCAAGCTCGCTTTTGTT
ACTCGAGGCTTGAGAACCGAAGCGAAGCAACGCGTGATCCCTTCCCATCT
GTTACTCTCATCGCGAAAGCTTGGCTTTACACAAGCTTAGACTCTGCATT
TTTGTGCGCGCGATACCGCTGAACCTTGAAGCACTGAGTCTAGTTAATCA
GAATGATTCGCGCTTCGCGGTTGTTATCGTATCGAATCGAATCGATTTTT
TGAACCGATATCCGACACTTCTTGTCCGCTGCAGAGAGCGGACGCTGCTG
AAACTGGTGGGGCGTTCATTATTTCTGCGATGCCCTACCGAGGCATGCCT
CGGGTGTCGCGAGACGTGTGCGGTAGCTCGATATCGGCTTTGGAGGCCCG
ATCGGTCAAGGGAAAGACTGCAGCGAATACAAATGACGACAGACAGCAAG
ACAGACAGACACACGGACAGAACAGAAAAAATTTGGCCAGGAGAGACCCA
AGCTCTCTCCTAACCCCAAACCCCAACTCTTGGCCAATTCTATAGTTTGT
CTAGTGTACGTTTGCTTACCGTAAGGTTGCGAGTCAGCCCACGGGGGTGC
GATCGATTTTCAAAGCGTTATTTCTCCACAACCAAGAAGGTACGAGCGCC
AACTGATACTTGTCAGGAAAGCTCTCGATGAGATCTTTCCACAACCGCCC
TTCTCGACAGCGGTAACCTCCTGGTTGTGGAGAAGTTACGCTTTGAAACT
CGTTCGCACCCCTGTGCGCTGACTCGCAACCTTGCGGTACTTAGAAAAGC
CTGCGTGGGCCACTGCGAGCTTGCGAATTCTCGGTCGGTAGAAAAAATCC
GACCCGCTTCTGTCAGGCTTTGCAAGGGTGGGTCGATTTGGCGGCAACTA
GCTACGGCGAGCCGGGTTAGTGTTGAAGTGGCCTGGCAGGCGTGACGGCT
TTTGTCTTGCGCTTGCTTGGCTCTGTCTCATGTACCTTGTCTGTCCTCGA
CGATAGGAGCTCTCTGTGACGGCTTTGTTTTGGCTCTTTCTCGTACGCCT
TTTTCCGTCCTTGTGACGTCGTGGCTTTCATGAACAGGGGTTCGCTGGGT
GGCACATCACCTCGGCGAAGCGGGGGGACAACATCGACGCGGCAATGACG
AGCCTCGTCGAGCACGCGCTTGAGGTAGGTATAGGTAATGCTACTCGGTG
ATTGCTTTTGAGACAGAATCGCGTTTTGTGGAAGGGCTTTCCGCGTCAGC
GCCGCCTTGGGAAGCAGTAGACAATGTGGTGGTAATGTTTAGTTATACCA
CATGTGATGTGTTGGTTTACAATATATCCCACAACATGTTCCACTTGGGT
AGTAATAGGTGTGAAATTGTTGGCCAAAATAGTCAGCGTTGCTCCTGAAA
GGTTGGGTATGAGCAATCCGAGCTTTGTCTGGTTATGGCCTTCCCAAGCT
TTGCTTCTGGCATGGTTTTCTTCCTCCTTTCCCCTCCCAGATTTTTTCAC
GGGAAAACCCGCACTCGCTCCGCCCCGGTACTGCCAGCTCATGTGCAAAA
CCACCAAACGGCGACCCATGTATTCACTCTCGTTTACAACATTTCCCGAG
TAATTTAGGGAAATTGCGGGGACTCAATGCTGCGGGCACTCAATCGTGTT
TTCTTTTCTATCTACTGAACGAATTCATGCACCGCAGGCTGAGGACCGAA
GAAATCGTGGGCCGGAGGTGGCAAGTCCTTCGAGAGACGGTCGCGGAGTC
GGCGGTGCAAAGGGGGGGGCGTTTCGACTGTCGTGCGAGGGGCGACGGGA
GGGGGTGCAACAGGCGGGGCCGTGCTGCGCATGACACCAACAAACCCGCG
CATACTGTATTGGAAAGGGGCGACGCGTGGTTGCGTGTGCCCCCCCCCAC
CCCGGCGCCTCGCTGGTGGCTTTCGTGTGGGAGGGAAGGAGGAGTGGGAT
CGCTTTGATATAATGCTATTAATTAGCTCGAATGGTCACGGCGTCCCTCT
TGTCTCGTGGATGAGGCAATTATCTTATCACGTGTTACAACAGGGGCAGG
GTTTTGCTTCGTGAGCAGGACCGAAAGCTACGATACAAGGACGACGAGGG
TTTTTTCAAGCAAGGGTAAAACAGCAACCACGGTCGAGATGTTCTGTCTC
CGATTGGCTATTCGGCCGTGTCCCGCTGAGGAAGTCTGTTGTCTATTTTT
CATGTTTCAGTTTGTCGCGTATAAGGCGAAAGAAGCTTGTTGTTTGTTCC
CACACTCGATATTCGCGTACGTGTTTAGTCTGTAAGTCCAGTCGTCTAGG
TGCTTTTGTGTCGTCATCTTTGCGAGAGATGATCTGTTGGCGGGATACAA
GGAGTTTGAAAACGAGAGAGAGACGCAAACGCCTCCTCGATCGATACATG
TATCCCTTTGCGGTTCAAAATTCCAACGCTGCCTCGAACCGCAAAGGGAT
ATCGATCAAACATCGACGAGGCGTTAGCGCGCATCTCTCTCTCTCTCTCT
CGGTTTCCACCTCCTTGTATCCCGCCATCTCCTTGAGTTTCAACGGTAAC
CAACCGTGATGTCACCAACACCACACGGTTCTACTGCTGTTGTGTTTTCC
CGGTGTTGCGTGATGATGGCTGCGAGCGTACATTTAAGGCACTACGTGTT
CTCGTCGGTTTGCCCAGCGTTTAGAGTCTACTGCCGATAAGTTGCTGTCC
TCCGAGCTGTTGAGTGTTTCTTCGTGTCGCTGGTCTGTGGTGTGTTACAA
CATTAGATGTTCGGTGACCAACAGCCTAGCTATGCATAGGTGCTGTCTAA
AAGAGCGGCGGCGTTTGCAATCCTCCGCCTTGAGAAGGCATTCTAGAGAT
AATTCATGGTTCGTTGGTCTTAGCGGAAACCTCGGTGGACTCGTTCACCT
CT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:542671..550572-

>mRNA_Ecto-sp6_S_contig97.18733.1 ID=mRNA_Ecto-sp6_S_contig97.18733.1|Name=mRNA_Ecto-sp6_S_contig97.18733.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1659bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:542671..550572- (Ectocarpus species6 EcLAC_371)
ATGCCCATGCGACTCGACGCCCTTACAATCGCGGGCCTGACGGGAACACC
TCACGGTGGTGGGGGCGGCGGGTTTGCCGGGCGAGAGATGGCTGCCCCCG
GCTCCCCCGCTGCCGGCTCCGACGCCACGCTGAGCTCCATCCAAGACTCG
TCCTGCGGCGGCGACGGCGGCGATGTGGGCGATGGCGACGGCAGTGCCTC
GGTGCTGTCGGATGATCTCGGGTCCGTCACGTTTACCGACGACAGCGGTA
CTACTGCTGAGGGGGAGGGAGAGGACAGCGATAGTAGTGGTTGTGACGGT
AGTGGTGGTGTTGTTGAAGCTGCGAGGACTGGTCCGCTTTGGGATGGTGA
GGTGAAGGGGGGATCTACGGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
CAATCGCAGCAGAGGAGCGGGGGCAGCGGGAAAGGGGAGGGCGTGGGCCA
GCGCCAGCAGAAGCAGCTGCAGGAGGAGACAGCGCTGGACCGGCGAGACC
AGCACGATACCACCCTACAGAGGTCGCCGGGGCAACTGATAACAGCGGCG
GTGCCTTGTCGTCGCCGGCTTCCCATCGTGCCGCGCCAAGCCCCGACTCG
TCCCTGCCTCCTCTTTCGCCGAGAAAGGGTGGACCACAACTGGGACACGC
AACAACGCTCCCGGCCACGGGTGCAAGCCACCCTAACCAAAGGGCCACCG
ATCCAGACGCCAGCACCACCACCTTACCACCTCCGGCACAACAACGACGA
CCGTCACATCAACAGGATCCCGACAGTAGCCGAGCTGAGGGCATCCTCGG
CGACTCCGGCATCAACAAAAGCAGCAACAGCAGCAACAACGACAACCAGC
GTAGATTATTGCGCGGCGGCTCGGGTACTGCTAGTACTGCCGTCGCCACC
GCCGTGAGCGGCGCTGACAGCGGGGGCGGAGGCGTTTCTGCTGCCCCGCC
ACCGGCGGCGGCAGAGCCGCCACGCGGCGGCGTAGTGCCGACGGTGACCT
GCAAGGTTCTCGTGGTCGGGAACGCCAAGTGCGGCAAGTCGTCCATCATC
AGCCGGTTCGTGAGCAACCGTTTCAGCTCGGACTACAACTCCACCGTTGG
GGCGGACTACGCCATGAAGGACGTTTCCCTCGAGAATGGACGACAGGTGC
GACTGCAGCTGTGGGATATCGCAGGTCAGGACCGGTTCGCCAAGCTGACG
CGCGCCTACTTCCGACGAGCGAAAGGCGCGGTCGTAGTGTGCGATGTCAC
CCGCGAGGGAACCTTCGATGCAATCGTCAGGTGGAAGGAAGAGATCGACC
TCTGGTGCCAGAACGAGGGCTGCGACCTCCCGGTTTACCTCTTCGCGAAC
AAGTGCGACCTGCTGAAGGAGGTTCAGGACAGCTTTCTCGCGGGGGCGAG
GATGGAGAAGACTTGCCGAGACGCGGGGTTCGCTGGGTGGCACATCACCT
CGGCGAAGCGGGGGGACAACATCGACGCGGCAATGACGAGCCTCGTCGAG
CACGCGCTTGAGGCTGAGGACCGAAGAAATCGTGGGCCGGAGGTGGCAAG
TCCTTCGAGAGACGGTCGCGGAGTCGGCGGTGCAAAGGGGGGGGCGTTTC
GACTGTCGTGCGAGGGGCGACGGGAGGGGGTGCAACAGGCGGGGCCGTGC
TGCGCATGA
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