mRNA_Ecto-sp6_S_contig97.18719.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig97.18719.1
Unique NamemRNA_Ecto-sp6_S_contig97.18719.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig97.18719.1 vs. uniprot
Match: D8LLA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA1_ECTSI)

HSP 1 Score: 547 bits (1409), Expect = 1.710e-194
Identity = 302/340 (88.82%), Postives = 309/340 (90.88%), Query Frame = 1 
Query:    1 QSTVTRPRAMGLMPSLGNRLELAARAILDGIKSLTSKLFVQAAMPLVLIDCKESDFRGLTMSDGTSNGPRLRMHPSMRPEAIVQRWSNRQVHTKRTVGQLLLVAQTLAPSRRLAIQHAIAVIRREGCLRKIGSESALVRLVSRLWEVMLESGGSSGSTDDCRDAMGKQLMGSALAKTANQEPAGKNSSRQKKVEI--SDGCSTANRVAKGTLEKNGRICGSSSSCGEATRRTKARGSGSSLRRVADQGGNDGSANSDAIMRGTFGASNTGLGTRSSGDKAEQRETTEINLKEEAGQQGLKVTMATPEQNQQQKVGVSETFGGRVENGSAVGEVTGDAMSR 1014
            +STVTRPRAMGLMPSLGNRLELAARAILDGIKSLTSKLFVQAAMPLVLIDCKESDFRGLTMSDGTSNGPRLRMHP MRPEAIVQRWSNRQ+HTKRTVGQLL VAQTLAP                 CLR+IGSESALVRLVSRLWEVMLESGGSS  T+DCRDAMGKQLMGS LAKTANQEPAGKNSSRQKKVEI  SDGCS ANR AKGTLEKNGRI GSSSSCGEATRRTKARGSGSSLRRVADQGG+DGSANSDAIMRGTFGASNTGLGTRSSGDK EQRETTEI+LKEEAGQQGLKVTM TPEQNQQQK+GVSE FGGRVENGSA GEVTGDAMSR
Sbjct:    6 ESTVTRPRAMGLMPSLGNRLELAARAILDGIKSLTSKLFVQAAMPLVLIDCKESDFRGLTMSDGTSNGPRLRMHPPMRPEAIVQRWSNRQIHTKRTVGQLLHVAQTLAPXXXXXXXXXXXXXXXXXCLRRIGSESALVRLVSRLWEVMLESGGSS--TNDCRDAMGKQLMGSVLAKTANQEPAGKNSSRQKKVEIEGSDGCSKANRAAKGTLEKNGRIRGSSSSCGEATRRTKARGSGSSLRRVADQGGSDGSANSDAIMRGTFGASNTGLGTRSSGDKEEQRETTEIHLKEEAGQQGLKVTMVTPEQNQQQKIGVSENFGGRVENGSAFGEVTGDAMSR 343
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLA1_ECTSI1.710e-19488.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig97contigEcto-sp6_S_contig97:445903..447254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1014
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_001850.1
Cds size987
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350598.9758768-CDS-Ecto-sp6_S_contig97:445902..4468181682350598.9758768-CDS-Ecto-sp6_S_contig97:445902..446818Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 445903..446818 -
1682350598.9854205-CDS-Ecto-sp6_S_contig97:447156..4472271682350598.9854205-CDS-Ecto-sp6_S_contig97:447156..447227Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 447157..447227 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350598.9959867-UTR-Ecto-sp6_S_contig97:447227..4472541682350598.9959867-UTR-Ecto-sp6_S_contig97:447227..447254Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig97 447228..447254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig97.18719.1prot_Ecto-sp6_S_contig97.18719.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig97 445903..447227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig97.18719.1

>prot_Ecto-sp6_S_contig97.18719.1 ID=prot_Ecto-sp6_S_contig97.18719.1|Name=mRNA_Ecto-sp6_S_contig97.18719.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=329bp
MGLMPSLGNRLELAARAILDGIKSLTSKLFVQAAMPLVLIDCKESDFRGL
TMSDGTSNGPRLRMHPSMRPEAIVQRWSNRQVHTKRTVGQLLLVAQTLAP
SRRLAIQHAIAVIRREGCLRKIGSESALVRLVSRLWEVMLESGGSSGSTD
DCRDAMGKQLMGSALAKTANQEPAGKNSSRQKKVEISDGCSTANRVAKGT
LEKNGRICGSSSSCGEATRRTKARGSGSSLRRVADQGGNDGSANSDAIMR
GTFGASNTGLGTRSSGDKAEQRETTEINLKEEAGQQGLKVTMATPEQNQQ
QKVGVSETFGGRVENGSAVGEVTGDAMSR
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mRNA from alignment at Ecto-sp6_S_contig97:445903..447254-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig97.18719.1 ID=mRNA_Ecto-sp6_S_contig97.18719.1|Name=mRNA_Ecto-sp6_S_contig97.18719.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1352bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:445903..447254- (Ectocarpus species6 EcLAC_371)
CAGTCCACCGTGACACGACCCCGGGCAATGGGGCTGATGCCGTCCCTGGG
CAACCGCTTAGAACTAGCGGCCAGAGCTATTCTTGATGGAATCAAGAGGT
GAGGGTCTGGTTCTTCCCGATAGACTGACGTGGGACGGAAAGGGTACCCT
TAAGCAAGAAGCAGGTCGTACGTTGTCAGTGTTGATTTTCCAGCGTGAGA
CACAGCTATGCACACTTGGGGGAACATATTCGAGGTGTTTTTCCGGGACA
GTATTGACGACCCAGTTGAACAATGCCGACATTCGTGTCTTTATGGTAGC
AACAACAAGTTGATTTTGAACGAATTCCATACAAACATATCTACATGTAT
GTCTCAAGCGTTCCCCCCTGTTGCGCCCCCACGCGCTCGTCCGGTTTTTC
CTCGTTCCGGACATGTAATAACACAAACAACCATAGCCTTACCAGCAAGC
TTTTCGTGCAAGCTGCGATGCCTCTGGTGCTGATCGACTGCAAAGAGTCC
GATTTCCGCGGACTAACAATGTCTGACGGCACCAGCAACGGCCCGCGGCT
CAGGATGCACCCGTCAATGCGGCCAGAGGCAATCGTGCAGCGGTGGTCTA
ACCGCCAGGTCCACACCAAGCGTACGGTTGGGCAGCTCCTGCTCGTGGCA
CAGACACTCGCACCCTCACGGCGCCTCGCGATCCAGCACGCAATTGCGGT
AATCCGCCGCGAAGGCTGTTTGCGGAAAATCGGAAGCGAGAGCGCGTTAG
TGCGACTGGTGTCAAGGTTGTGGGAGGTCATGTTGGAGAGTGGCGGCAGT
AGTGGCAGCACGGATGATTGCCGGGATGCGATGGGGAAACAGCTCATGGG
CAGTGCTCTTGCCAAGACCGCGAATCAGGAACCGGCGGGTAAGAATTCTT
CTAGACAAAAGAAGGTCGAGATCAGCGACGGTTGTAGCACGGCTAACCGG
GTAGCTAAAGGAACCTTGGAGAAGAATGGCCGCATCTGTGGCAGCAGTAG
CTCCTGCGGTGAGGCCACACGGCGGACGAAGGCACGCGGTAGTGGGTCAA
GTCTGCGGCGAGTGGCCGATCAAGGCGGAAACGACGGTAGCGCCAACAGC
GACGCGATAATGCGTGGAACGTTCGGGGCGAGCAACACTGGCCTTGGCAC
ACGCAGCTCCGGTGACAAGGCGGAGCAGAGGGAGACAACAGAGATTAATC
TGAAGGAGGAGGCAGGCCAGCAAGGACTAAAAGTAACGATGGCTACGCCA
GAGCAGAACCAACAGCAGAAGGTTGGCGTCAGCGAAACCTTCGGTGGTAG
GGTAGAGAACGGCTCGGCCGTTGGGGAGGTGACGGGTGACGCGATGAGCC
GC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:445903..447254-

>mRNA_Ecto-sp6_S_contig97.18719.1 ID=mRNA_Ecto-sp6_S_contig97.18719.1|Name=mRNA_Ecto-sp6_S_contig97.18719.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=987bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:445903..447254- (Ectocarpus species6 EcLAC_371)
ATGGGGCTGATGCCGTCCCTGGGCAACCGCTTAGAACTAGCGGCCAGAGC
TATTCTTGATGGAATCAAGAGCCTTACCAGCAAGCTTTTCGTGCAAGCTG
CGATGCCTCTGGTGCTGATCGACTGCAAAGAGTCCGATTTCCGCGGACTA
ACAATGTCTGACGGCACCAGCAACGGCCCGCGGCTCAGGATGCACCCGTC
AATGCGGCCAGAGGCAATCGTGCAGCGGTGGTCTAACCGCCAGGTCCACA
CCAAGCGTACGGTTGGGCAGCTCCTGCTCGTGGCACAGACACTCGCACCC
TCACGGCGCCTCGCGATCCAGCACGCAATTGCGGTAATCCGCCGCGAAGG
CTGTTTGCGGAAAATCGGAAGCGAGAGCGCGTTAGTGCGACTGGTGTCAA
GGTTGTGGGAGGTCATGTTGGAGAGTGGCGGCAGTAGTGGCAGCACGGAT
GATTGCCGGGATGCGATGGGGAAACAGCTCATGGGCAGTGCTCTTGCCAA
GACCGCGAATCAGGAACCGGCGGGTAAGAATTCTTCTAGACAAAAGAAGG
TCGAGATCAGCGACGGTTGTAGCACGGCTAACCGGGTAGCTAAAGGAACC
TTGGAGAAGAATGGCCGCATCTGTGGCAGCAGTAGCTCCTGCGGTGAGGC
CACACGGCGGACGAAGGCACGCGGTAGTGGGTCAAGTCTGCGGCGAGTGG
CCGATCAAGGCGGAAACGACGGTAGCGCCAACAGCGACGCGATAATGCGT
GGAACGTTCGGGGCGAGCAACACTGGCCTTGGCACACGCAGCTCCGGTGA
CAAGGCGGAGCAGAGGGAGACAACAGAGATTAATCTGAAGGAGGAGGCAG
GCCAGCAAGGACTAAAAGTAACGATGGCTACGCCAGAGCAGAACCAACAG
CAGAAGGTTGGCGTCAGCGAAACCTTCGGTGGTAGGGTAGAGAACGGCTC
GGCCGTTGGGGAGGTGACGGGTGACGCGATGAGCCGC
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