mRNA_Ecto-sp6_S_contig97.18717.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig97.18717.1
Unique NamemRNA_Ecto-sp6_S_contig97.18717.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig97.18717.1 vs. uniprot
Match: D8LLA2_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA2_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 4.180e-45
Identity = 106/121 (87.60%), Postives = 109/121 (90.08%), Query Frame = 1 
Query:    1 VLDVLKAALNKDPSQRLSLPRFCRVLLDQDLWTTQRASAPVMSGLAASVSDRIRGILDGKERRGGVXXXXXXXXXXXXXXXXXXXXXXETAWYKNTEGVAPXXXXXEPVRQELLFLRELLP 363
            VLDVLKAALNKDPSQRLSLPRFC+VLLDQDLW+TQRA APVMSGLAASVSDRIRGILDGKERR GV   XXXXXXXXXXXXXXXXXX ETAWY +TEGVAP     EPVRQELLFLRELLP
Sbjct: 1208 VLDVLKAALNKDPSQRLSLPRFCQVLLDQDLWSTQRARAPVMSGLAASVSDRIRGILDGKERRSGVSSSXXXXXXXXXXXXXXXXXXEETAWYNDTEGVAPWWKDTEPVRQELLFLRELLP 1328
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BLAST of mRNA_Ecto-sp6_S_contig97.18717.1 vs. uniprot
Match: A0A6H5L013_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L013_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 5.160e-30
Identity = 66/101 (65.35%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 VLDVLKAALNKDPSQRLSLPRFCRVLLDQDLWTTQRASAPVMSGLAASVSDRIRGILDGKERRGGVXXXXXXXXXXXXXXXXXXXXXXETAWYKNTEGVAP 303
            VLDVLKAALNKDPSQRLSLPRFC+VLLDQDLW+TQR  APVMSGLAAS + RIRGILDG ERR GV                      ETA Y +TEGV P
Sbjct: 1054 VLDVLKAALNKDPSQRLSLPRFCQVLLDQDLWSTQRTRAPVMSGLAASGAQRIRGILDGNERRSGVNSSTWGEEDDGAGGDGGASGEEETALYNDTEGVVP 1154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLA2_ECTSI4.180e-4587.60N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5L013_9PHAE5.160e-3065.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig97contigEcto-sp6_S_contig97:438246..438611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350598.8617272-CDS-Ecto-sp6_S_contig97:438245..4386111682350598.8617272-CDS-Ecto-sp6_S_contig97:438245..438611Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 438246..438611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig97.18717.1prot_Ecto-sp6_S_contig97.18717.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig97 438246..438611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig97.18717.1

>prot_Ecto-sp6_S_contig97.18717.1 ID=prot_Ecto-sp6_S_contig97.18717.1|Name=mRNA_Ecto-sp6_S_contig97.18717.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=122bp
VLDVLKAALNKDPSQRLSLPRFCRVLLDQDLWTTQRASAPVMSGLAASVS
DRIRGILDGKERRGGVSSSTGGEESDGAGGGGGASGEEETAWYKNTEGVA
PWWKNTEPVRQELLFLRELLP*
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mRNA from alignment at Ecto-sp6_S_contig97:438246..438611-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig97.18717.1 ID=mRNA_Ecto-sp6_S_contig97.18717.1|Name=mRNA_Ecto-sp6_S_contig97.18717.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=366bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:438246..438611- (Ectocarpus species6 EcLAC_371)
GTGTTGGACGTTCTGAAGGCTGCCTTGAACAAAGACCCCAGCCAACGCCT
CTCCTTGCCGAGGTTCTGCCGAGTACTTCTCGACCAAGACCTGTGGACGA
CGCAGCGGGCAAGCGCACCCGTCATGAGCGGCTTGGCGGCATCAGTCTCG
GATAGGATCCGGGGTATTCTGGACGGCAAGGAGAGGAGGGGCGGTGTCAG
CTCTTCCACCGGGGGCGAGGAAAGTGACGGCGCCGGGGGCGGCGGTGGTG
CTAGCGGCGAGGAGGAGACCGCGTGGTACAAGAATACCGAGGGCGTCGCC
CCCTGGTGGAAGAACACCGAGCCGGTTCGACAAGAGCTACTCTTCCTGAG
AGAGTTGTTGCCTTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:438246..438611-

>mRNA_Ecto-sp6_S_contig97.18717.1 ID=mRNA_Ecto-sp6_S_contig97.18717.1|Name=mRNA_Ecto-sp6_S_contig97.18717.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:438246..438611- (Ectocarpus species6 EcLAC_371)
GTGTTGGACGTTCTGAAGGCTGCCTTGAACAAAGACCCCAGCCAACGCCT
CTCCTTGCCGAGGTTCTGCCGAGTACTTCTCGACCAAGACCTGTGGACGA
CGCAGCGGGCAAGCGCACCCGTCATGAGCGGCTTGGCGGCATCAGTCTCG
GATAGGATCCGGGGTATTCTGGACGGCAAGGAGAGGAGGGGCGGTGTCAG
CTCTTCCACCGGGGGCGAGGAAAGTGACGGCGCCGGGGGCGGCGGTGGTG
CTAGCGGCGAGGAGGAGACCGCGTGGTACAAGAATACCGAGGGCGTCGCC
CCCTGGTGGAAGAACACCGAGCCGGTTCGACAAGAGCTACTCTTCCTGAG
AGAGTTGTTGCCTTAG
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