mRNA_Ecto-sp6_S_contig97.18713.1 (mRNA) Ectocarpus species6 EcLAC_371
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: D8LLA9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA9_ECTSI) HSP 1 Score: 802 bits (2071), Expect = 6.400e-292 Identity = 423/442 (95.70%), Postives = 428/442 (96.83%), Query Frame = 1
Query: 1 MVSAGITVLRVGYVCLTNVYCLVTLSHISATWVLRKDFYFAVRSPLLMTASGLAGVLAGSTAVSRTVMFPGLRSLFILRIFSIPLTALCFVVVYILRGLRVIVMYTPSRRQRWGRYLKKEAATVKVLLAAYVIVEVAAWIVVRHVGLARVASFMVTVVKIDTVVTLSASLALFGQLRRTQDVFKVSLEIQRAGACALLTSVMIMFLGSIPAGVFEFYLVLFYTVRFHVILWLTNIQPARERMKTRGATPNTRGIMAKLFPYVPWRKHGGTVAIDSAEGMVLAASPHSCQSTVKLDDAMEEILLCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHASTANEDTNFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDKEAFKQLSLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQITGVLFSTKAGDDKNGS 1326
MVSAGITVLRVGYVCLTNVYCLVTLSHISATWVLRKDFYFAVRSP+LMTASGLAGVLAGSTAVSRTVMFPGLRSLFILRIFSIPLTALC VV YILRGLRVIVMYTPSRRQRWGRYLKKEAA VKVLL AYVIVEVAAWIVVRHVGLARVASFMVTVVKIDTVVTLSASLALFGQLRRTQDVFKVSLEIQRAGACALLTSVMIMFLGSIPAGV EFYLVLFYTVRFHVILWLTNIQPARER+ R ATPNTRGIMAKLFPYVPWRKHGGTVAIDSAE MVLAAS H +STVKLDDAMEEIL CPVLLEAFEEFCRKALCSESILFLKAAWAFNDSV+ASTANEDTNFALFMDIFDKYIKDGSPFEINI+SKTKSFIMKRTDKEAFKQL LDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQITGVLFSTKAGDDKNGS
Sbjct: 1 MVSAGITVLRVGYVCLTNVYCLVTLSHISATWVLRKDFYFAVRSPVLMTASGLAGVLAGSTAVSRTVMFPGLRSLFILRIFSIPLTALCLVVAYILRGLRVIVMYTPSRRQRWGRYLKKEAAMVKVLLTAYVIVEVAAWIVVRHVGLARVASFMVTVVKIDTVVTLSASLALFGQLRRTQDVFKVSLEIQRAGACALLTSVMIMFLGSIPAGVLEFYLVLFYTVRFHVILWLTNIQPARERLGRRDATPNTRGIMAKLFPYVPWRKHGGTVAIDSAECMVLAASTHCSKSTVKLDDAMEEILRCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVYASTANEDTNFALFMDIFDKYIKDGSPFEINIESKTKSFIMKRTDKEAFKQLRLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQITGVLFSTKAGDDKNGS 442
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE) HSP 1 Score: 319 bits (818), Expect = 4.010e-101 Identity = 193/440 (43.86%), Postives = 262/440 (59.55%), Query Frame = 1
Query: 127 RSPLLMTASGLAGVLAGSTAVSRTVMFPGL--RSLFILRIFSIPLTALCFVVVYILRGLRVIVMYTPSRRQRWGRYLKKEAATVKVLLAAYVIVEVAA----------------------------------WIVVRHVGLA--------RVASFMVTVVKIDTVVTLSASLALFGQLRRTQDVFKVSLEIQRAGACALLT--SVMIMFLGSIPAGVFEFYLVLFYTVRFHVILWLTNIQPARERMKTRGATPNTRGIMAKLFPYVPWRKHGGTVAIDSAEGMVLAASPHSCQST-VKLDDAMEEILLCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHASTANEDTNFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDKEAFKQLSLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQITGVLFSTKA 1305
RSPLL T SGLAGV + A + V+ + L I ++PL + FV YI+RG+R++VMY P R RWGRY KE VKV++ +V++++ + W+ L RVA M+ V+ +D ++T+ ASL L G+L RT+D+F +S+EI+ G ALL +M + + +PA V FYL+LF T RF +W+TNIQP R+ ++ R P G +A LFPYVPW G VAID + P S + T VKLDD +EEIL P LLEAF EFCRKALCSES++FL A F++S+ AS A+ DT FA F +I D+YI+DGS FE+NI+SKTK+ I+ RT +FK+L LDDA LD A KE+GKML+ENLY+KFR T+QFK+I +L+S +A
Sbjct: 51 RSPLLGTVSGLAGVSVWAFATTGAVINSEVVNAQLAFAPIITVPLVLVAFVGAYIIRGIRLLVMYNPHMRHRWGRYFNKETFMVKVVIVLFVVLQLVSSLAXXXXXXXXXXXTGDDNTMLGETFHEALQAMRWLTTLFTELLIRIKFAAYRVAGAMIAVIAVDMLLTIGASLMLVGKLARTKDMFDMSVEIRSVGGFALLALGELMGIVIPMVPATVLNFYLILFLTTRFGTAVWITNIQPVRKVLQRRADHPINAGGIASLFPYVPWTTRSGAVAIDVMNESKVFTKPSSSKFTSVKLDDKLEEILRFPPLLEAFGEFCRKALCSESLMFLTAGKDFHESLDASDADYDTIFARFNEIVDQYIRDGSSFEVNIESKTKAQILSRTSMSSFKELPLDDAVCILDLAVKEIGKMLQENLYNKFRSTEQFKEIKDMLYSAEA 490
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: D7FYZ5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ5_ECTSI) HSP 1 Score: 206 bits (525), Expect = 6.430e-57 Identity = 153/453 (33.77%), Postives = 240/453 (52.98%), Query Frame = 1
Query: 49 TNVYCLVTLSHISATWVLRKDFYFAVRSPLLMTASGLAGVL-AGSTAVSRTVMFPGLRSLFILRIFSIPLTALCFVVVYILRGLRVIVMYTPSRRQRWGRYLKKEAATVKVLLAAYVIVEVAAWIVV----------------RHVGLARVASFMVTVVKIDTVVT----------LSASLALFGQLRRTQDVFKVSLEI---QRAGACALLTSVMIMFLGSIPAGVF------EFYLVLFYTVRFHVILWLTNIQPARERMKTRGATPNTRGIMAKLFPYVPWRKHG-GTVAIDSAEGMVLAASPHSCQSTVKLDDAMEEILLCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHASTANEDTNFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDKEAFKQLSLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQITGVLFS 1296
T V+ LV+LS+ +A LRK+F+ A+RSP+L SG G+L +G + T+ + S +I +PL L F YILRG+R+++M+TP RQRWG +L+ E + ++LA +++++V W V + G++ V + +V V + T T S G L R + L I + C L + M+M G AG F ++V+F VRFH LW+TNI+P RE ++ + + + FPYVPWR+ G VA+ E M + + ST++L +E I+ P LLEAF+ FC+KALC ESIL L+ AF DS++A A++D F F+ I +K+IK GS +E+NID + ++ +M+ D+ FK+L D A A + +ML +NL KF+ T+++++I L +
Sbjct: 81 TVVFSLVSLSYCAAMGQLRKEFFIALRSPMLAVMSGAIGILISGPEIIGMTLTYD--MSAGPEKILCVPLM-LSFTATYILRGVRLLIMFTPRSRQRWGSFLR-ERNFIPIVLAIFLVLQVVVWSFVPTYGVPIKCWIQHNCVKSQGISFVWNMLVCVPRAGTTRTNGHPSFNCRWCSVLREAPGALPRATLFTCLHLSILNFRSVWCCECLDAAMVM--GMKAAGEFYTPTLMRMHMVVFMVVRFHTALWITNIKPVREVLRQ---SSDRKDYHVPWFPYVPWRRSASGKVAVGMNETMHVTCTSRPL-STIQLG-RLETIINTPPLLEAFDSFCQKALCGESILLLREVAAFRDSIYAVEADDDALFKEFVAIVNKFIKSGSSYEVNIDCRARTGVMRDVDEARFKELDTDGRADIFTLAETQTSQMLADNLLAKFQATERYQRIAEGLLA 522
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: A0A6H5JLE7_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE7_9PHAE) HSP 1 Score: 164 bits (416), Expect = 9.010e-44 Identity = 115/313 (36.74%), Postives = 161/313 (51.44%), Query Frame = 1
Query: 445 RVASFMVTVVKIDTVVTLSASLALFGQLRRTQDVFKVSLEIQRAGACALLTSVMIMFLGSIPAGVFEFYLVLFYTVRFHVILWLT---------NIQPARERMKTRGATPNTRGIMAKLFPYVPWRKHGGTVAIDSAEGMVLAASPHSCQSTVKLDDAMEEILLCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHAST------------------ANEDTNFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDKEAFKQLSLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQITGVLFSTK 1302
R+A F + VV DT++TL ASL LFG+LR+T+DVF +SLEIQ+ G A+ E Y H + L+ NIQP R + RG T G ++ LFPY+PW KHG A + + + S TV ++ I+ P L +A ES++FL A FN S+HA + E+ NF F I DKYI++GSPFE+NI+SK + I++ D+ +F++L+LD+ LD A K+V ML+ENLY KFR+T+QFKQI LFS +
Sbjct: 10 RIAYFTLGVVVADTLLTLGASLVLFGKLRKTKDVFDMSLEIQKVGIFAM--------------AALECY---------HAVKDLSTVGPSQARSNIQPVRAAL-LRGPAKETVGFISLLFPYIPWTKHGSRKVAVEASYTLRSQAASSAGGTV-----LDLIIQFPPLFQACLSPVSDCAFVESLMFLVDADEFNCSLHAVSKFTSAGADPSPAAMGVVECEENLNFEQFAAIVDKYIREGSPFEVNIESKIRDEILREVDRASFRRLTLDEKVHLLDKATKQVSNMLRENLYLKFRETEQFKQIQEQLFSVE 293
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: D7FN97_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN97_ECTSI) HSP 1 Score: 150 bits (378), Expect = 2.150e-39 Identity = 85/199 (42.71%), Postives = 120/199 (60.30%), Query Frame = 1
Query: 760 IMAKLFPYVPWRKHGGTVAIDSAEGMVLAASPHSCQSTVKLDDAMEEILLCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHA----STANEDT--------------NFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDKEAFKQLSLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQITGVLFSTK 1302
++ LFPY+PW KH + A + + S S TV ++ I+ P L +AFEE+CR ALCSES++FL A FN ++HA STA +D NF F I DKYI++GSPFE+NI+SK ++ I++ D+ +F++L+LDD L+ A K+V ML+ENLY KFR+T+QFKQI LFS +
Sbjct: 3 FISSLFPYIPWTKHERSKVAVEASYTLRSQSASSAGGTV-----LDLIIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFSTAGKDPESAAVAVNECEHNPNFEQFAAIVDKYIREGSPFEVNIESKIRNEILREVDRASFERLNLDDKEHLLEKATKQVSNMLRENLYHKFRETEQFKQIQEQLFSVE 196
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: A0A6H5K6R2_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6R2_9PHAE) HSP 1 Score: 147 bits (372), Expect = 7.040e-39 Identity = 80/161 (49.69%), Postives = 105/161 (65.22%), Query Frame = 1
Query: 697 TNIQPARERM--KTRGATPNTRGIMAKLFPYVPWRKHGGTVAIDSAEGMVLA--ASPHSCQSTVKLDDAMEEILLCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHASTANEDTNFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDKEAFKQL 1167
+NIQ R + + R N GI+A L PY+PWR+ VA+D+ + S + +VKLDDA+E+IL LLEAFEEFC+KALC ES++FLKA F SVHASTA++D NF L DI KY++ GSPFE+NIDSKTKS I+ + +E F +L
Sbjct: 7 SNIQSIRASVLPRRRRNNYNNGGIIASLLPYIPWREDASIVAVDAVGRRFTSRGVSLGNINRSVKLDDALEQILCFTPLLEAFEEFCQKALCIESLMFLKAVMGFRGSVHASTASDDGNFTLLTDIVQKYVQSGSPFEVNIDSKTKSNILVKITRETFMRL 167
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: A0A6H5KBN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBN3_9PHAE) HSP 1 Score: 117 bits (294), Expect = 1.070e-27 Identity = 65/129 (50.39%), Postives = 85/129 (65.89%), Query Frame = 1
Query: 58 YCLVTLSHISATWVLRKDFYFAVRSPLLMTASGLAGVLAGSTAVSRTVMFPGLRSLF-ILRIFSIPLTALCFVVVYILRGLRVIVMYTPSRRQRWGRYLKKEAATVKVLLAAYVIVEVAAWIVVRHVGL 441
+ L LSHISA W LRKDF+F+VRSPLL T SGL GV+ G+ AV+R ++ P + I I +PL L F+ Y++RG+R++VMY P+ R WGR+ E A VK+LL A+ IVEV AW V GL
Sbjct: 39 FTLTALSHISAAWRLRKDFFFSVRSPLLATTSGLVGVVLGAFAVARLIVIPDKLVVHSISLIIFVPLMELGFLGPYVMRGIRLLVMYNPATRTHWGRFFTSELAVVKILLVAFGIVEVIAWSAVLLFGL 167
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: D8LLA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA8_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 7.710e-17 Identity = 106/438 (24.20%), Postives = 134/438 (30.59%), Query Frame = 1
Query: 1 MVSAGI-TVLRVGYVCLTNVYCLVTLSHISATWVLRKDFYFAVRSPLLMTASGLAGVLAGSTAVSRTVMFPGLRSLFILRIFSIPLTALCFVVVYILRGLRVIVMYTPSRRQRWGRYLKKEAATVKVLLAAYVIVEVAAWIVVRHVGLARVASFMVTVVKIDTVVTLSASLALFGQLRRTQDVFKVSLEIQRAGACALLTSVMIMFLGSIPAGVFEFYLVLFYTVRFHVILWLTNIQPARERMKTRGATPNTRGIMAKLFPYVPWRKHGGTVAIDSAEGMVLAASPHSCQSTVKLDDAMEEILLCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHASTANEDTNFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDKEAFKQLSLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQITGVLFSTKAGD 1311
MVS GI VLR+ +CLT Y LV+L HI+ATW+LRKD YFAV RV SFMV V I++++TL ASL LFG+LRRT D+F+VSLEI++ GACALLT TVK+D+ +++ILL LL+AFEE+C +ALC E ++ A LD AAKEVG MLK+ L+D+FR+TDQFKQIT GD
Sbjct: 1 MVSTGIIVVLRIVCMCLTIAYGLVSLGHITATWMLRKDLYFAV----------------------------------------------------------------------------------------------------------RVGSFMVIVAMIESLITLGASLVLFGKLRRTNDIFEVSLEIRKVGACALLT-------------------------------------------------------------------------------------------TVKVDETLQQILLSTPLLQAFEEYCLRALCGEDVV---------------------------------------------------------------------AASLDGAAKEVGMMLKDKLFDRFRETDQFKQITAKSALKAPGD 172
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: D7G2T8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T8_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 2.100e-10 Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = 1
Query: 913 PVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHASTANE----DTNFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDK--EAFKQLSLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQI 1278
P+L AFE++ ++ALC ES+LFL + + +A+ N T F F I D +IK G+P E+NI K + I++ K E+F++++ ++ + EV ML+ NL +F TDQFK +
Sbjct: 470 PLLAAAFEDYSKRALCHESVLFLSEVSRYQNDDYATPTNAAGTCPTQFGTFCYITDTFIKAGAPEEVNISDKDRKLILELYQKGEESFEEVNEEERRMVFKRSYLEVKSMLEANLLRRFLNTDQFKSV 597
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: D7G2T5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T5_ECTSI) HSP 1 Score: 70.5 bits (171), Expect = 6.860e-10 Identity = 47/136 (34.56%), Postives = 69/136 (50.74%), Query Frame = 1
Query: 895 EEILLCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHASTANED------TNFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDK--EAFKQLSLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQI 1278
E + P+L AFE++ ++ALC ES+LFL + +A++A T F F I D +IK GSP E+NI K I+ K E+F ++ +D A EV ML+ NL +F TD+FK +
Sbjct: 123 ERLARTPLLAAAFEDYSKRALCHESVLFLSEVSRYQSDDYATSARPSSESSCPTQFGTFCYITDTFIKGGSPEEVNISDADKKAILDVYHKGEESFGGVNEEDRRMIFSPAYLEVKSMLEANLLRRFLNTDRFKSV 258 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig97.18713.1 >prot_Ecto-sp6_S_contig97.18713.1 ID=prot_Ecto-sp6_S_contig97.18713.1|Name=mRNA_Ecto-sp6_S_contig97.18713.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=443bp MVSAGITVLRVGYVCLTNVYCLVTLSHISATWVLRKDFYFAVRSPLLMTAback to top mRNA from alignment at Ecto-sp6_S_contig97:382130..388340+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig97.18713.1 ID=mRNA_Ecto-sp6_S_contig97.18713.1|Name=mRNA_Ecto-sp6_S_contig97.18713.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6211bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:382130..388340+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:382130..388340+ >mRNA_Ecto-sp6_S_contig97.18713.1 ID=mRNA_Ecto-sp6_S_contig97.18713.1|Name=mRNA_Ecto-sp6_S_contig97.18713.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1329bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:382130..388340+ (Ectocarpus species6 EcLAC_371)back to top |