mRNA_Ecto-sp6_S_contig97.18713.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig97.18713.1
Unique NamemRNA_Ecto-sp6_S_contig97.18713.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: D8LLA9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA9_ECTSI)

HSP 1 Score: 802 bits (2071), Expect = 6.400e-292
Identity = 423/442 (95.70%), Postives = 428/442 (96.83%), Query Frame = 1
Query:    1 MVSAGITVLRVGYVCLTNVYCLVTLSHISATWVLRKDFYFAVRSPLLMTASGLAGVLAGSTAVSRTVMFPGLRSLFILRIFSIPLTALCFVVVYILRGLRVIVMYTPSRRQRWGRYLKKEAATVKVLLAAYVIVEVAAWIVVRHVGLARVASFMVTVVKIDTVVTLSASLALFGQLRRTQDVFKVSLEIQRAGACALLTSVMIMFLGSIPAGVFEFYLVLFYTVRFHVILWLTNIQPARERMKTRGATPNTRGIMAKLFPYVPWRKHGGTVAIDSAEGMVLAASPHSCQSTVKLDDAMEEILLCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHASTANEDTNFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDKEAFKQLSLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQITGVLFSTKAGDDKNGS 1326
            MVSAGITVLRVGYVCLTNVYCLVTLSHISATWVLRKDFYFAVRSP+LMTASGLAGVLAGSTAVSRTVMFPGLRSLFILRIFSIPLTALC VV YILRGLRVIVMYTPSRRQRWGRYLKKEAA VKVLL AYVIVEVAAWIVVRHVGLARVASFMVTVVKIDTVVTLSASLALFGQLRRTQDVFKVSLEIQRAGACALLTSVMIMFLGSIPAGV EFYLVLFYTVRFHVILWLTNIQPARER+  R ATPNTRGIMAKLFPYVPWRKHGGTVAIDSAE MVLAAS H  +STVKLDDAMEEIL CPVLLEAFEEFCRKALCSESILFLKAAWAFNDSV+ASTANEDTNFALFMDIFDKYIKDGSPFEINI+SKTKSFIMKRTDKEAFKQL LDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQITGVLFSTKAGDDKNGS
Sbjct:    1 MVSAGITVLRVGYVCLTNVYCLVTLSHISATWVLRKDFYFAVRSPVLMTASGLAGVLAGSTAVSRTVMFPGLRSLFILRIFSIPLTALCLVVAYILRGLRVIVMYTPSRRQRWGRYLKKEAAMVKVLLTAYVIVEVAAWIVVRHVGLARVASFMVTVVKIDTVVTLSASLALFGQLRRTQDVFKVSLEIQRAGACALLTSVMIMFLGSIPAGVLEFYLVLFYTVRFHVILWLTNIQPARERLGRRDATPNTRGIMAKLFPYVPWRKHGGTVAIDSAECMVLAASTHCSKSTVKLDDAMEEILRCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVYASTANEDTNFALFMDIFDKYIKDGSPFEINIESKTKSFIMKRTDKEAFKQLRLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQITGVLFSTKAGDDKNGS 442          
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE)

HSP 1 Score: 319 bits (818), Expect = 4.010e-101
Identity = 193/440 (43.86%), Postives = 262/440 (59.55%), Query Frame = 1
Query:  127 RSPLLMTASGLAGVLAGSTAVSRTVMFPGL--RSLFILRIFSIPLTALCFVVVYILRGLRVIVMYTPSRRQRWGRYLKKEAATVKVLLAAYVIVEVAA----------------------------------WIVVRHVGLA--------RVASFMVTVVKIDTVVTLSASLALFGQLRRTQDVFKVSLEIQRAGACALLT--SVMIMFLGSIPAGVFEFYLVLFYTVRFHVILWLTNIQPARERMKTRGATPNTRGIMAKLFPYVPWRKHGGTVAIDSAEGMVLAASPHSCQST-VKLDDAMEEILLCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHASTANEDTNFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDKEAFKQLSLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQITGVLFSTKA 1305
            RSPLL T SGLAGV   + A +  V+   +    L    I ++PL  + FV  YI+RG+R++VMY P  R RWGRY  KE   VKV++  +V++++ +                                  W+      L         RVA  M+ V+ +D ++T+ ASL L G+L RT+D+F +S+EI+  G  ALL    +M + +  +PA V  FYL+LF T RF   +W+TNIQP R+ ++ R   P   G +A LFPYVPW    G VAID      +   P S + T VKLDD +EEIL  P LLEAF EFCRKALCSES++FL A   F++S+ AS A+ DT FA F +I D+YI+DGS FE+NI+SKTK+ I+ RT   +FK+L LDDA   LD A KE+GKML+ENLY+KFR T+QFK+I  +L+S +A
Sbjct:   51 RSPLLGTVSGLAGVSVWAFATTGAVINSEVVNAQLAFAPIITVPLVLVAFVGAYIIRGIRLLVMYNPHMRHRWGRYFNKETFMVKVVIVLFVVLQLVSSLAXXXXXXXXXXXTGDDNTMLGETFHEALQAMRWLTTLFTELLIRIKFAAYRVAGAMIAVIAVDMLLTIGASLMLVGKLARTKDMFDMSVEIRSVGGFALLALGELMGIVIPMVPATVLNFYLILFLTTRFGTAVWITNIQPVRKVLQRRADHPINAGGIASLFPYVPWTTRSGAVAIDVMNESKVFTKPSSSKFTSVKLDDKLEEILRFPPLLEAFGEFCRKALCSESLMFLTAGKDFHESLDASDADYDTIFARFNEIVDQYIRDGSSFEVNIESKTKAQILSRTSMSSFKELPLDDAVCILDLAVKEIGKMLQENLYNKFRSTEQFKEIKDMLYSAEA 490          
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: D7FYZ5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ5_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 6.430e-57
Identity = 153/453 (33.77%), Postives = 240/453 (52.98%), Query Frame = 1
Query:   49 TNVYCLVTLSHISATWVLRKDFYFAVRSPLLMTASGLAGVL-AGSTAVSRTVMFPGLRSLFILRIFSIPLTALCFVVVYILRGLRVIVMYTPSRRQRWGRYLKKEAATVKVLLAAYVIVEVAAWIVV----------------RHVGLARVASFMVTVVKIDTVVT----------LSASLALFGQLRRTQDVFKVSLEI---QRAGACALLTSVMIMFLGSIPAGVF------EFYLVLFYTVRFHVILWLTNIQPARERMKTRGATPNTRGIMAKLFPYVPWRKHG-GTVAIDSAEGMVLAASPHSCQSTVKLDDAMEEILLCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHASTANEDTNFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDKEAFKQLSLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQITGVLFS 1296
            T V+ LV+LS+ +A   LRK+F+ A+RSP+L   SG  G+L +G   +  T+ +    S    +I  +PL  L F   YILRG+R+++M+TP  RQRWG +L+ E   + ++LA +++++V  W  V                +  G++ V + +V V +  T  T           S      G L R      + L I   +    C  L + M+M  G   AG F        ++V+F  VRFH  LW+TNI+P RE ++    + + +      FPYVPWR+   G VA+   E M +  +     ST++L   +E I+  P LLEAF+ FC+KALC ESIL L+   AF DS++A  A++D  F  F+ I +K+IK GS +E+NID + ++ +M+  D+  FK+L  D  A     A  +  +ML +NL  KF+ T+++++I   L +
Sbjct:   81 TVVFSLVSLSYCAAMGQLRKEFFIALRSPMLAVMSGAIGILISGPEIIGMTLTYD--MSAGPEKILCVPLM-LSFTATYILRGVRLLIMFTPRSRQRWGSFLR-ERNFIPIVLAIFLVLQVVVWSFVPTYGVPIKCWIQHNCVKSQGISFVWNMLVCVPRAGTTRTNGHPSFNCRWCSVLREAPGALPRATLFTCLHLSILNFRSVWCCECLDAAMVM--GMKAAGEFYTPTLMRMHMVVFMVVRFHTALWITNIKPVREVLRQ---SSDRKDYHVPWFPYVPWRRSASGKVAVGMNETMHVTCTSRPL-STIQLG-RLETIINTPPLLEAFDSFCQKALCGESILLLREVAAFRDSIYAVEADDDALFKEFVAIVNKFIKSGSSYEVNIDCRARTGVMRDVDEARFKELDTDGRADIFTLAETQTSQMLADNLLAKFQATERYQRIAEGLLA 522          
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: A0A6H5JLE7_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE7_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 9.010e-44
Identity = 115/313 (36.74%), Postives = 161/313 (51.44%), Query Frame = 1
Query:  445 RVASFMVTVVKIDTVVTLSASLALFGQLRRTQDVFKVSLEIQRAGACALLTSVMIMFLGSIPAGVFEFYLVLFYTVRFHVILWLT---------NIQPARERMKTRGATPNTRGIMAKLFPYVPWRKHGGTVAIDSAEGMVLAASPHSCQSTVKLDDAMEEILLCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHAST------------------ANEDTNFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDKEAFKQLSLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQITGVLFSTK 1302
            R+A F + VV  DT++TL ASL LFG+LR+T+DVF +SLEIQ+ G  A+                 E Y         H +  L+         NIQP R  +  RG    T G ++ LFPY+PW KHG       A   + + +  S   TV     ++ I+  P L +A           ES++FL  A  FN S+HA +                    E+ NF  F  I DKYI++GSPFE+NI+SK +  I++  D+ +F++L+LD+    LD A K+V  ML+ENLY KFR+T+QFKQI   LFS +
Sbjct:   10 RIAYFTLGVVVADTLLTLGASLVLFGKLRKTKDVFDMSLEIQKVGIFAM--------------AALECY---------HAVKDLSTVGPSQARSNIQPVRAAL-LRGPAKETVGFISLLFPYIPWTKHGSRKVAVEASYTLRSQAASSAGGTV-----LDLIIQFPPLFQACLSPVSDCAFVESLMFLVDADEFNCSLHAVSKFTSAGADPSPAAMGVVECEENLNFEQFAAIVDKYIREGSPFEVNIESKIRDEILREVDRASFRRLTLDEKVHLLDKATKQVSNMLRENLYLKFRETEQFKQIQEQLFSVE 293          
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: D7FN97_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN97_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 2.150e-39
Identity = 85/199 (42.71%), Postives = 120/199 (60.30%), Query Frame = 1
Query:  760 IMAKLFPYVPWRKHGGTVAIDSAEGMVLAASPHSCQSTVKLDDAMEEILLCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHA----STANEDT--------------NFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDKEAFKQLSLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQITGVLFSTK 1302
             ++ LFPY+PW KH  +     A   + + S  S   TV     ++ I+  P L +AFEE+CR ALCSES++FL  A  FN ++HA    STA +D               NF  F  I DKYI++GSPFE+NI+SK ++ I++  D+ +F++L+LDD    L+ A K+V  ML+ENLY KFR+T+QFKQI   LFS +
Sbjct:    3 FISSLFPYIPWTKHERSKVAVEASYTLRSQSASSAGGTV-----LDLIIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFSTAGKDPESAAVAVNECEHNPNFEQFAAIVDKYIREGSPFEVNIESKIRNEILREVDRASFERLNLDDKEHLLEKATKQVSNMLRENLYHKFRETEQFKQIQEQLFSVE 196          
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: A0A6H5K6R2_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6R2_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 7.040e-39
Identity = 80/161 (49.69%), Postives = 105/161 (65.22%), Query Frame = 1
Query:  697 TNIQPARERM--KTRGATPNTRGIMAKLFPYVPWRKHGGTVAIDSAEGMVLA--ASPHSCQSTVKLDDAMEEILLCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHASTANEDTNFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDKEAFKQL 1167
            +NIQ  R  +  + R    N  GI+A L PY+PWR+    VA+D+      +   S  +   +VKLDDA+E+IL    LLEAFEEFC+KALC ES++FLKA   F  SVHASTA++D NF L  DI  KY++ GSPFE+NIDSKTKS I+ +  +E F +L
Sbjct:    7 SNIQSIRASVLPRRRRNNYNNGGIIASLLPYIPWREDASIVAVDAVGRRFTSRGVSLGNINRSVKLDDALEQILCFTPLLEAFEEFCQKALCIESLMFLKAVMGFRGSVHASTASDDGNFTLLTDIVQKYVQSGSPFEVNIDSKTKSNILVKITRETFMRL 167          
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: A0A6H5KBN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBN3_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.070e-27
Identity = 65/129 (50.39%), Postives = 85/129 (65.89%), Query Frame = 1
Query:   58 YCLVTLSHISATWVLRKDFYFAVRSPLLMTASGLAGVLAGSTAVSRTVMFPGLRSLF-ILRIFSIPLTALCFVVVYILRGLRVIVMYTPSRRQRWGRYLKKEAATVKVLLAAYVIVEVAAWIVVRHVGL 441
            + L  LSHISA W LRKDF+F+VRSPLL T SGL GV+ G+ AV+R ++ P    +  I  I  +PL  L F+  Y++RG+R++VMY P+ R  WGR+   E A VK+LL A+ IVEV AW  V   GL
Sbjct:   39 FTLTALSHISAAWRLRKDFFFSVRSPLLATTSGLVGVVLGAFAVARLIVIPDKLVVHSISLIIFVPLMELGFLGPYVMRGIRLLVMYNPATRTHWGRFFTSELAVVKILLVAFGIVEVIAWSAVLLFGL 167          
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: D8LLA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA8_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 7.710e-17
Identity = 106/438 (24.20%), Postives = 134/438 (30.59%), Query Frame = 1
Query:    1 MVSAGI-TVLRVGYVCLTNVYCLVTLSHISATWVLRKDFYFAVRSPLLMTASGLAGVLAGSTAVSRTVMFPGLRSLFILRIFSIPLTALCFVVVYILRGLRVIVMYTPSRRQRWGRYLKKEAATVKVLLAAYVIVEVAAWIVVRHVGLARVASFMVTVVKIDTVVTLSASLALFGQLRRTQDVFKVSLEIQRAGACALLTSVMIMFLGSIPAGVFEFYLVLFYTVRFHVILWLTNIQPARERMKTRGATPNTRGIMAKLFPYVPWRKHGGTVAIDSAEGMVLAASPHSCQSTVKLDDAMEEILLCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHASTANEDTNFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDKEAFKQLSLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQITGVLFSTKAGD 1311
            MVS GI  VLR+  +CLT  Y LV+L HI+ATW+LRKD YFAV                                                                                                          RV SFMV V  I++++TL ASL LFG+LRRT D+F+VSLEI++ GACALLT                                                                                           TVK+D+ +++ILL   LL+AFEE+C +ALC E ++                                                                     A  LD AAKEVG MLK+ L+D+FR+TDQFKQIT        GD
Sbjct:    1 MVSTGIIVVLRIVCMCLTIAYGLVSLGHITATWMLRKDLYFAV----------------------------------------------------------------------------------------------------------RVGSFMVIVAMIESLITLGASLVLFGKLRRTNDIFEVSLEIRKVGACALLT-------------------------------------------------------------------------------------------TVKVDETLQQILLSTPLLQAFEEYCLRALCGEDVV---------------------------------------------------------------------AASLDGAAKEVGMMLKDKLFDRFRETDQFKQITAKSALKAPGD 172          
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: D7G2T8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T8_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.100e-10
Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  913 PVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHASTANE----DTNFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDK--EAFKQLSLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQI 1278
            P+L  AFE++ ++ALC ES+LFL     + +  +A+  N      T F  F  I D +IK G+P E+NI  K +  I++   K  E+F++++ ++       +  EV  ML+ NL  +F  TDQFK +
Sbjct:  470 PLLAAAFEDYSKRALCHESVLFLSEVSRYQNDDYATPTNAAGTCPTQFGTFCYITDTFIKAGAPEEVNISDKDRKLILELYQKGEESFEEVNEEERRMVFKRSYLEVKSMLEANLLRRFLNTDQFKSV 597          
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Match: D7G2T5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T5_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 6.860e-10
Identity = 47/136 (34.56%), Postives = 69/136 (50.74%), Query Frame = 1
Query:  895 EEILLCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHASTANED------TNFALFMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDK--EAFKQLSLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQI 1278
            E +   P+L  AFE++ ++ALC ES+LFL     +    +A++A         T F  F  I D +IK GSP E+NI    K  I+    K  E+F  ++ +D       A  EV  ML+ NL  +F  TD+FK +
Sbjct:  123 ERLARTPLLAAAFEDYSKRALCHESVLFLSEVSRYQSDDYATSARPSSESSCPTQFGTFCYITDTFIKGGSPEEVNISDADKKAILDVYHKGEESFGGVNEEDRRMIFSPAYLEVKSMLEANLLRRFLNTDRFKSV 258          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LLA9_ECTSI6.400e-29295.70RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K976_9PHAE4.010e-10143.86RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYZ5_ECTSI6.430e-5733.77RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JLE7_9PHAE9.010e-4436.74RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FN97_ECTSI2.150e-3942.71RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K6R2_9PHAE7.040e-3949.69RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KBN3_9PHAE1.070e-2750.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLA8_ECTSI7.710e-1724.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2T8_ECTSI2.100e-1034.38RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2T5_ECTSI6.860e-1034.56RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig97contigEcto-sp6_S_contig97:382130..388340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score803.9
Seed ortholog evalue3.8e-230
Seed eggNOG ortholog2880.D8LLA9
Model size1329
Hectar predicted targeting categorysignal peptide
Exons7
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
Ec32 ortholog descriptionRGS domain
Ec32 orthologEc-27_001930.1
Cds size1329
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig97.18713.1prot_Ecto-sp6_S_contig97.18713.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig97 382130..388340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350598.4774587-CDS-Ecto-sp6_S_contig97:382129..3822571682350598.4774587-CDS-Ecto-sp6_S_contig97:382129..382257Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 382130..382257 +
1682350598.4870434-CDS-Ecto-sp6_S_contig97:383484..3838021682350598.4870434-CDS-Ecto-sp6_S_contig97:383484..383802Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 383485..383802 +
1682350598.4948716-CDS-Ecto-sp6_S_contig97:384847..3850021682350598.4948716-CDS-Ecto-sp6_S_contig97:384847..385002Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 384848..385002 +
1682350598.5051131-CDS-Ecto-sp6_S_contig97:386128..3862251682350598.5051131-CDS-Ecto-sp6_S_contig97:386128..386225Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 386129..386225 +
1682350598.5131788-CDS-Ecto-sp6_S_contig97:386951..3872191682350598.5131788-CDS-Ecto-sp6_S_contig97:386951..387219Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 386952..387219 +
1682350598.5212765-CDS-Ecto-sp6_S_contig97:387725..3879321682350598.5212765-CDS-Ecto-sp6_S_contig97:387725..387932Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 387726..387932 +
1682350598.52905-CDS-Ecto-sp6_S_contig97:388184..3883401682350598.52905-CDS-Ecto-sp6_S_contig97:388184..388340Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 388185..388340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig97.18713.1

>prot_Ecto-sp6_S_contig97.18713.1 ID=prot_Ecto-sp6_S_contig97.18713.1|Name=mRNA_Ecto-sp6_S_contig97.18713.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=443bp
MVSAGITVLRVGYVCLTNVYCLVTLSHISATWVLRKDFYFAVRSPLLMTA
SGLAGVLAGSTAVSRTVMFPGLRSLFILRIFSIPLTALCFVVVYILRGLR
VIVMYTPSRRQRWGRYLKKEAATVKVLLAAYVIVEVAAWIVVRHVGLARV
ASFMVTVVKIDTVVTLSASLALFGQLRRTQDVFKVSLEIQRAGACALLTS
VMIMFLGSIPAGVFEFYLVLFYTVRFHVILWLTNIQPARERMKTRGATPN
TRGIMAKLFPYVPWRKHGGTVAIDSAEGMVLAASPHSCQSTVKLDDAMEE
ILLCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVHASTANEDTNFAL
FMDIFDKYIKDGSPFEINIDSKTKSFIMKRTDKEAFKQLSLDDAARGLDA
AAKEVGKMLKENLYDKFRQTDQFKQITGVLFSTKAGDDKNGS*
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mRNA from alignment at Ecto-sp6_S_contig97:382130..388340+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig97.18713.1 ID=mRNA_Ecto-sp6_S_contig97.18713.1|Name=mRNA_Ecto-sp6_S_contig97.18713.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6211bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:382130..388340+ (Ectocarpus species6 EcLAC_371)
ATGGTTTCTGCCGGCATCACGGTGCTCCGCGTCGGGTACGTGTGCCTGAC AAACGTGTACTGTTTGGTCACCCTCAGTCACATCAGCGCAACCTGGGTGC TGAGGAAGGATTTCTACTTTGCCGTCAGGTGTGTGTGTGTGTTTCATGCC GTAGCCTACGGTATTTACAAACAACATCTAGCTGTTGATTTTGCGCAAAC CCTTGCCTGGTTGCAAACAAACGTGTTGCCATGACTAGGCTATGACCGAC AAATAAACCGTCACAGTCCTGCACCCATCATATTTATAAATGTGTAACCC CGGTGTGGTAGAGTACAAGGATATATATATTGTAGATTCATGCGATTTAT AAAATAATTGATCCGTGGTCATCCACTTTGTCAACCACGACACCGAACCA ACGCAAACAAATGTGCATTATATTATTAAGGAAACATAAAAACACACACA GAATGACTACTCATTCGTGCACATGTTTTCGAAGGATGTATGCTTGATTT GGTTGTTGTATGAACGGTTTTGAATGGGAATATAACAACAATAAGCCTGA TGGCCACGACATGCACAACAAATCTTCGAGAGATAAAAGTTTCCCATACC CCTGTTATATAGTGCATACTCCTCCTCGCCGTGTCCGTTAGAATATGTAT GCAGTGTTGTTATCGAACACATGCAGTGGCATGCATCCCCTCGCTCACCT CCTCGTACCTCACACCATTTGTTGTGCTGGACACAGCAGCAATTACCTGC TTCGTGGCTGACGTGTTTGACCCCCCACCTATTTTATTCATGAACACTTG TTCTGCTCGTGTCAAAAAGGGCATCAAATATGGGTCAAGAGGTGGGCTGT GTCAGTTGCCCACCCGCAATGAAACGAAGGCTGGACTGACGACGAAACTG ATGGCATTCCATCCCATCGTACAACATACAGCTTGTTGTGGCCTCTCGTC GCATGCTTCAGCGAAGATTAAACGAGAGGAAAACAGTACATATGTAAAGT GTCAAGACAAAATCGAGTGCGGATAGAGATCCGTCCCAGAGCTCTTACGT AGACCAGGCCCCTTGCGCTTCAAACGCCCACAACAGTGGCTATTTCGAGG CAATGAACGCCCTTGAGACTCATCCCCAGCACAAAGGAACAGGGCTGTCG CACGAGCCGATTCTCGGCGGGAGAACAGAGCGTAGGCGCACACAAGGCTT ACAACACACCAGAGAAAAACAACTTTTGCGTTTCTCGAATAAATCATGCG GTGTGGTTGCGGTCTCAGACAGCTCATGATACATGCCAACAACGGGGTCT CTCTAATCCTCTCCGCCTCTCCCGGCCCTCTTGGTCTTCAACCAATCGAC CACAGGTCTCCCCTCCTGATGACAGCATCAGGCCTTGCCGGTGTACTGGC CGGGAGCACGGCGGTGTCGCGCACAGTCATGTTTCCTGGGCTTCGATCCC TGTTTATTCTGCGGATCTTCAGCATTCCCTTGACGGCACTCTGCTTCGTC GTGGTGTACATTTTGCGGGGCCTCCGTGTTATCGTCATGTACACCCCTTC TCGTCGGCAGCGCTGGGGAAGATACCTCAAGAAAGAAGCCGCCACGGTCA AGGTCTTGCTGGCCGCCTACGTGATTGTGGAGGTTGCCGCATGGATTGTT GTACGACACGTCGGACTTGCAAGGTGATAGATGGGGAATATCTCCCATTG GTCAGGACCTCGAATGTCTTTGTACCATAAGATGATCCAACACACCAATC TTTCGTCCCTACCTAGTACACTGTCGCAGAGTACGGGAATGGTACGACGG CATTGAACACTACATTTATCCCAAGCCTTCGGCGACAGGCCGTTCGTGCG CCATAATTTTCGGCGTTGGTCACTTCCCCGTCGTCGAGAAACCGAGTAGA CCACACGATTTCGTCCTTGTGCAAAACCGAGCCGCTTTGGCGTACGTTTA AGCCCCAACCGTATTTGTGTCATTCTAGTGCGGTTATGTGCTCCGTGTAG AAGGCACGAGTCGTCGATTGTGCGTGCGAATACCGGAGTCTCTCAGTGAA ACGAGATGCACCCCCGCGGGCAGGTTGCAAGCGTCTCACAAGTATCCGCC CCCAAGTTAAACATTGTTCGTGGGATCTAAACAACGACCGCAATTCCCTC GAGTATCCGATACAATTGTGATATAATACCTCGACCCCTTGTGAAGTTTT CTGAAAAGAAGGGCGTAAGGGTAGGGGCGGGGCTTGCTGTCAGCCAATAC ACATGGTTGATTAGTTCCAGTTTTCGGACTGGAGAGATCGGGGCTACCTT CTGCGACACAACCGTACACACAAAACACTGTTTGCACAATCGAGATGACG GCGCAAGAGCTAGCATGGACCGATTTTGAGGCTCATTTAGTGTCTACAAA AAGAGCGACGGAGGACGGGAAGCGTTTCAGCTTGTAACACCGCAAGCCGT GTGTTTGGTGTTTGCTCTCTTCTCCCAGCCATGGGGGTGGAATGTGATCA TGAGTTGCGCTGCTCAACCTGTCTTCATCCTGACTACGACGCTTCAGGAT AATCAGTAAACAAGAACCGTGCCAACACAGGCAGCACCCTACCGCGTTGT GAGCCTCCCCGGAATACGCCCTGTTGACTCTTGCCTACACAGTAGTACGT ACCGATGATGACCCAATCCAGTAACTTGAATCTACACCGTACATGGCATC CACATGAAACGTTCACAGGGTCGCAAGCTTCATGGTCACAGTGGTTAAGA TCGACACCGTCGTCACCCTGAGTGCGTCCCTCGCACTTTTCGGTCAGCTG CGCCGGACCCAGGACGTGTTCAAGGTATCCTTGGAGATACAAAGAGCCGG GGCTTGCGCGTTGCTCACCTCGGGTGAGTGCTCGTTTGCCGCGTCTAGCT TCTTCAGAATTGAGACATTTCTCATTTCGAGATCGATATGTGGTTCTGCT CCTGATAGATGCATCATCAACACCCTGGTGCTCCATAGGATTTGGCCATA TTTGACAACAGACTATCGCTGGTCATGGTCGTATATCCTCTCTTGTTAGG CACTGTTGTGCGGTAGTGGTCCCCTAGCTTGGCGATTACTTTCTTTCTCA CTATGAAACATTTCAAGAGGAAGAGATGATGACACCCATCATGATGCTCC TCTCCTTCTCGACGGGTCCCGTGTTTTTCCCGGGTTGATTGACATTCAAC CACGTTCGTGAGTCCTGCTCTCTTTTGTCTTGCCACACGGGCACGCTTTC GCGCAACCTTTCGCTCTTCCTCCAAAATGCCGGGAGATGGCCTTCGTGGT GTTCTCCAAATATGGTTTCCATTCGATGGAGCGCAAATAAGTCATGTGCA CCCAGACACTTCATGGGCCGAATACACCCCACACAGGGAATAAAACAGGA GAAAATATGACCAGTCTCGATCCTATCCCCAACCCTGCGTCAGGGTGGTC TTTGGGTGGTATAACGTTCTTCGTGCAGGTCTGTGTAAGCTACTGTCAGC TCAGGCGCGCACGCCAAATGAGTGCACCCATCACTTGTTTGCGCTCCCCT GGGTTGCACTGAACATTGTTGTTTGTGTTCGCCAGTCCAGGCCCCCTTCC GAAAACGTACGTTTCGCTTGTCCACGTCATTCGTCGGGATGTGTGTGTGT GGTTACATATATGTCGCCGATGAGTGTCAAGACACGCCGGGCTGCGGCCT TGTTAGCAGCTTGGTCGAGATGTTGTATCAAATCTGCGTTAGATGAGCCA CCATCCGCTGCAAGGCGCACATATGCCATGCCCCGAGTGCAAATGGCACA CTTGCACAGCCACGTGTCATGGATATCTCCGTTGACCCCGTGTTGTGCGA ACAGAGATGGGACCTCGTACTACTGTACGTTGACCGGCTCTACTTCACCC TAGCTCGTGGCCGTGCTGGAGCTTCTTTTGACAACTAACCCAACCCTTGT TTCCTTCGCGCTCCTGCCGTGCTTCCACGTACCGTACGGACAAACACAGT GATGATCATGTTTCTGGGCTCCATCCCGGCCGGGGTGTTTGAGTTCTACC TGGTCCTGTTCTACACGGTCAGATTCCATGTCATACTGTGGTTAACGTGA GTGCATACACCAGGCGTCATGTGCCAGTCCACTCTTCGACACGATATCAC TATCGTTTGCCCCCAGAATCGTCGAAGGACGTTTTGTTCGCGAAGCGACG AAGAAAAGTGTTTGTTGGTGGTTGTCAACTTTCCCATGGGCACCATGGCA AAGACGAGAAGATTGTTGAAACATATGCTTTCGTCAAGTACTCTGTAAGG TCGCCCACCATTGTCAACACCACGAATCACCGATTCTGGTTCCTCTACGA GGATTACCATGCGCTCGGCGTAAACGAAGTCACAGAAATTTCTCGGGGAT GACTTTATTTGTCTTAAAACAAATAATTATCCTGACATTAAAACTGTGGC GTGGTCATCTCGTTGCGTCTCTTCCGTACCACAGTACCCTTATACATTTA CTGTCAAGCTTTCCGCCGTGTGAACCTGCCGCATGTGAGGAGGTACGGGG ACCTTCCTATGTTGGCCTCTCATCCGGTTGTTTTGATGCGATCATTCGCG GATCAGCACCACATGTGTCCTTCGACTGCACATGCAATGCTCATGGTATA TTTCGCACGGCAGCCAGCGTGAAACACGGCGAGCGCAGAATGCATCACGG GGACTAACTAGATGCCGCAGTGAGGCACACATACCGCTCAGTGGTCAAGC AATATGACTAACGAGGTGTACGCTGTCGGACGTTCCCTGCCCGACTGCAT CATCATGCCCTCCGCGATTCAGAAACATCCAGCCAGCGAGAGAAAGAATG AAAACGAGGGGCGCTACCCCCAACACCAGGGGTATTATGGCCAAGCTCTT CCCGTATGTACCGTGGAGGAAGCACGGTGGCACCGTGGCGATCGATTCGG CTGAAGGCATGGTTTTGGCAGCCTCGCCGCATTCTTGCCAATCCACTGTC AAGTTGGACGATGCGATGGAGGAGATCCTGCTCTGTCCCGTGCTCCTGGA GGCATTCGAAGAGTTTTGTCGTAAGGCGCTCTGCAGCGAGGTGAGATTCA ACCAGGACTGTCTCAAACGTAATGCGCATGTGTAGGTACGCAACGAGTGA GAGCTAATATCCCGCCGCTCTTGCCTTTGAAAATGTGCCTCTAAACGACA CTCTGCACGAGATGTAAACCGACCTTGAGACACGCCAGCAAACAGGTAAG CGACAGGTTGGGCGGACTTTTTAGAAGGGTAGCCCCCTACTCGAGATGTT TCTATTTTCTGGTACATAAGGCTTGTAGAAACTCCCTCTTCGAGGGTCGA CTCGACAACAACAAAAGGCTGTTTCCAATCCACCAGAGAATGCAAGGGCG GAAGGCAGGCAGGCAGGCGGCGAAGGAAAGGGCGTTGTTTGTTTCGGTCA TGCTAGAGAACGAGGAGAACCCGTTGTTGTACTGGACAGTCGGTCGTTGC CCTGGCTCCTCCTACTATTGGTTGCTGTGCCAATGCCCCCCTCTACCCCC CACCACCCATTCCCCTTGGCCCGTATCCATTTCATTATGCATGCAGTCAA TTCTGTTCTTGAAAGCGGCTTGGGCATTCAATGACTCTGTTCACGCATCG ACTGCCAATGAGGACACCAACTTCGCGCTGTTCATGGACATTTTCGACAA GTACATCAAGGACGGGTCCCCCTTCGAGATCAACATCGATAGCAAGACCA AGTCCTTTATCATGAAACGAACCGACAAGGAGGCCTTCAAACAGCTTTCT TTGGTACGTATTCGATGCCCTAGGTCGGGAATCCACCCTTGGCCGACCTG CCGCACGCCACGTGTTAAGCATACAACGCCCTCCGTGTTCCTCAACCATA GGGTATTTCTGCTGGTCTCCTTTTCTTCGAACGCGTGCACGTCGTTACCG TTGACTGCGCTTCACATCGAGATGCCGGGCTGCAAGGATTTACCCTTGCG CACCCCCCCTTACCCGCACGTCGGTCACTGTTTCTGCGTGAACGAACTCT TTCAGGACGATGCAGCTCGAGGTCTGGATGCCGCTGCCAAAGAAGTCGGG AAGATGCTCAAAGAGAATCTCTACGACAAGTTCCGGCAGACGGACCAGTT CAAGCAGATCACAGGCGTGCTGTTCTCAACAAAGGCAGGCGACGACAAGA ACGGGAGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:382130..388340+

>mRNA_Ecto-sp6_S_contig97.18713.1 ID=mRNA_Ecto-sp6_S_contig97.18713.1|Name=mRNA_Ecto-sp6_S_contig97.18713.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1329bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:382130..388340+ (Ectocarpus species6 EcLAC_371)
ATGGTTTCTGCCGGCATCACGGTGCTCCGCGTCGGGTACGTGTGCCTGAC
AAACGTGTACTGTTTGGTCACCCTCAGTCACATCAGCGCAACCTGGGTGC
TGAGGAAGGATTTCTACTTTGCCGTCAGGTCTCCCCTCCTGATGACAGCA
TCAGGCCTTGCCGGTGTACTGGCCGGGAGCACGGCGGTGTCGCGCACAGT
CATGTTTCCTGGGCTTCGATCCCTGTTTATTCTGCGGATCTTCAGCATTC
CCTTGACGGCACTCTGCTTCGTCGTGGTGTACATTTTGCGGGGCCTCCGT
GTTATCGTCATGTACACCCCTTCTCGTCGGCAGCGCTGGGGAAGATACCT
CAAGAAAGAAGCCGCCACGGTCAAGGTCTTGCTGGCCGCCTACGTGATTG
TGGAGGTTGCCGCATGGATTGTTGTACGACACGTCGGACTTGCAAGGGTC
GCAAGCTTCATGGTCACAGTGGTTAAGATCGACACCGTCGTCACCCTGAG
TGCGTCCCTCGCACTTTTCGGTCAGCTGCGCCGGACCCAGGACGTGTTCA
AGGTATCCTTGGAGATACAAAGAGCCGGGGCTTGCGCGTTGCTCACCTCG
GTGATGATCATGTTTCTGGGCTCCATCCCGGCCGGGGTGTTTGAGTTCTA
CCTGGTCCTGTTCTACACGGTCAGATTCCATGTCATACTGTGGTTAACAA
ACATCCAGCCAGCGAGAGAAAGAATGAAAACGAGGGGCGCTACCCCCAAC
ACCAGGGGTATTATGGCCAAGCTCTTCCCGTATGTACCGTGGAGGAAGCA
CGGTGGCACCGTGGCGATCGATTCGGCTGAAGGCATGGTTTTGGCAGCCT
CGCCGCATTCTTGCCAATCCACTGTCAAGTTGGACGATGCGATGGAGGAG
ATCCTGCTCTGTCCCGTGCTCCTGGAGGCATTCGAAGAGTTTTGTCGTAA
GGCGCTCTGCAGCGAGTCAATTCTGTTCTTGAAAGCGGCTTGGGCATTCA
ATGACTCTGTTCACGCATCGACTGCCAATGAGGACACCAACTTCGCGCTG
TTCATGGACATTTTCGACAAGTACATCAAGGACGGGTCCCCCTTCGAGAT
CAACATCGATAGCAAGACCAAGTCCTTTATCATGAAACGAACCGACAAGG
AGGCCTTCAAACAGCTTTCTTTGGACGATGCAGCTCGAGGTCTGGATGCC
GCTGCCAAAGAAGTCGGGAAGATGCTCAAAGAGAATCTCTACGACAAGTT
CCGGCAGACGGACCAGTTCAAGCAGATCACAGGCGTGCTGTTCTCAACAA
AGGCAGGCGACGACAAGAACGGGAGCTAA
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