mRNA_Ecto-sp6_S_contig97.18710.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig97.18710.1
Unique NamemRNA_Ecto-sp6_S_contig97.18710.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig97.18710.1 vs. uniprot
Match: D8LLB2_ECTSI (HSF_DOMAIN domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLB2_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 3.770e-51
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 2
Query:   44 MDYGFPPARGGRGAPSMFPRKLYQILCETDPEIITWDDDGKSFHIANYEEYIEGVMPLFYRHNKLTSFQRQLNLYG 271
            MDYGFPPARGGRGAPSMFPRKLYQILCETDPEIITWDDDGKSFHIANYEEYIEGVMPLFYRHNKLTSFQRQLNLYG
Sbjct:    1 MDYGFPPARGGRGAPSMFPRKLYQILCETDPEIITWDDDGKSFHIANYEEYIEGVMPLFYRHNKLTSFQRQLNLYG 76          
BLAST of mRNA_Ecto-sp6_S_contig97.18710.1 vs. uniprot
Match: A0A6H5JRR2_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR2_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 4.280e-50
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 2
Query:   17 MSRGEGQEGMDYGFPPARGGRGAPSMFPRKLYQILCETDPEIITWDDDGKSFHIANYEEYIEGVMPLFYRHNKLTSFQRQLNLYG 271
            MSRG GQ+GMDYGFPPARGGRGAPSMFPRKLYQILCETDPEII+WDDDGKSFHIANYEEYIEGVMPLFYRHNKLTSFQRQLNLYG
Sbjct:    1 MSRGLGQDGMDYGFPPARGGRGAPSMFPRKLYQILCETDPEIISWDDDGKSFHIANYEEYIEGVMPLFYRHNKLTSFQRQLNLYG 85          
BLAST of mRNA_Ecto-sp6_S_contig97.18710.1 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.440e-17
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 2
Query:   62 PARGGRGAPSMFPRKLYQILCETDPEIITWDDDGKSFHIANYEEYIEGVMPLFYRHNKLTSFQRQLNLYG 271
            P  G RGAP +FPRKLY+IL     +II W D GKSF I   E ++  ++  ++RH K +SFQRQLNLYG
Sbjct:    4 PRTGRRGAPQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYG 73          
BLAST of mRNA_Ecto-sp6_S_contig97.18710.1 vs. uniprot
Match: A0A7S2G7U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7U9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.000e-15
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 2
Query:   62 PARGGRGAPSMFPRKLYQILCETDPEIITWDDDGKSFHIANYEEYIEGVMPLFYRHNKLTSFQRQLNLYG 271
            P  G RGAP +FPRKLY+IL     ++I W   GKSF I   E ++  ++  ++RH K +SFQRQLNLYG
Sbjct:   96 PRTGRRGAPQVFPRKLYEILTNERSDVIGWTSSGKSFIILEMEIFVNEILMNYFRHQKYSSFQRQLNLYG 165          
BLAST of mRNA_Ecto-sp6_S_contig97.18710.1 vs. uniprot
Match: A0A7S2CXJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CXJ7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.390e-15
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   62 PARGGRGAPSMFPRKLYQILCETDPEIITWDDDGKSFHIANYEEYIEGVMPLFYRHNKLTSFQRQLNLYG 271
            P  G RGAP +FPRKLY+IL     +II+W ++G SF I   ++++  ++  ++RH K +SFQRQLNLYG
Sbjct:   74 PRTGRRGAPQVFPRKLYEILTLESSDIISWTENGTSFVIQEMDDFVNEILMKYFRHRKYSSFQRQLNLYG 143          
BLAST of mRNA_Ecto-sp6_S_contig97.18710.1 vs. uniprot
Match: A0A7S2R5C8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5C8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 8.490e-15
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 2
Query:   62 PARGGRGAPSMFPRKLYQILCETDPEIITWDDDGKSFHIANYEEYIEGVMPLFYRHNKLTSFQRQLNLYG 271
            P  G RGAP +FPRKLY+IL     + I+W + G SF I + E ++  V+  ++RH K +SFQRQLNLYG
Sbjct:   66 PRTGKRGAPQVFPRKLYEILDNESEDTISWTESGHSFVIKDMETFVTSVLMKYFRHQKFSSFQRQLNLYG 135          
BLAST of mRNA_Ecto-sp6_S_contig97.18710.1 vs. uniprot
Match: A0A7R9YBQ9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBQ9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.550e-14
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 2
Query:   47 DYGFPPARGGRGAPSMFPRKLYQILCETDPEIITWDDDGKSFHIANYEEYIEGVMPLFYRHNKLTSFQRQLNLYG 271
            DY   P  G RGAP +FPRKL+++L + D  +I WD++G+ F I + + +    +  +++H+K TSFQRQLNLYG
Sbjct:   44 DYKRYPRTGKRGAPQVFPRKLFELLEKEDSAVIRWDEEGECFVIQDMDTFTRESLERYFKHHKFTSFQRQLNLYG 118          
BLAST of mRNA_Ecto-sp6_S_contig97.18710.1 vs. uniprot
Match: A0A7S2WTE1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTE1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.240e-14
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 2
Query:   95 FPRKLYQILCETDPEIITWDDDGKSFHIANYEEYIEGVMPLFYRHNKLTSFQRQLNLYG 271
            FPR+LY +L + D +II+WD DGKSF I +   +   V+P ++RH++LTSFQRQLN+YG
Sbjct:   35 FPRRLYDMLTKEDVKIISWDHDGKSFRILDANLFSSQVLPKYFRHSRLTSFQRQLNMYG 93          
BLAST of mRNA_Ecto-sp6_S_contig97.18710.1 vs. uniprot
Match: A0A835Z401_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z401_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.320e-14
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 2
Query:   62 PARGGRGAPSMFPRKLYQILCETDPEIITWDDDGKSFHIANYEEYIEGVMPLFYRHNKLTSFQRQLNLYG 271
            P  G RGAP  FPR+LY+IL E DP I++W   G+ F + N   +    +  ++RHN  TSFQRQ NLYG
Sbjct:   55 PKTGKRGAPQAFPRRLYEILQEEDPSIVSWVKGGEGFKVNNMHLFANKTLVNYFRHNNYTSFQRQCNLYG 124          
BLAST of mRNA_Ecto-sp6_S_contig97.18710.1 vs. uniprot
Match: A0A7S2WVY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVY9_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.490e-14
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 2
Query:   95 FPRKLYQILCETDPEIITWDDDGKSFHIANYEEYIEGVMPLFYRHNKLTSFQRQLNLYG 271
            FPR+LY++L   DP I+ W  +G++F + N   +   V+P ++RH KLTSFQRQLNLYG
Sbjct:   24 FPRRLYELLNNEDPSIVMWTKNGQAFRVMNTARFCAEVLPKYFRHQKLTSFQRQLNLYG 82          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLB2_ECTSI3.770e-51100.00HSF_DOMAIN domain-containing protein (Fragment) n=... [more]
A0A6H5JRR2_9PHAE4.280e-5096.47HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
A0A7S2BSE7_9STRA1.440e-1752.86Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2G7U9_9STRA2.000e-1550.00Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2CXJ7_9STRA6.390e-1548.57Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2R5C8_9STRA8.490e-1550.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9YBQ9_9STRA1.550e-1445.33Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2WTE1_9STRA3.240e-1454.24Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835Z401_9STRA4.320e-1448.57HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A7S2WVY9_9STRA5.490e-1450.85Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig97contigEcto-sp6_S_contig97:355977..356493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size274
Hectar predicted targeting categoryother localisation
Exons2
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350594.3559916-CDS-Ecto-sp6_S_contig97:355976..3561531682350594.3559916-CDS-Ecto-sp6_S_contig97:355976..356153Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 355977..356153 -
1682350594.3644876-CDS-Ecto-sp6_S_contig97:356397..3564931682350594.3644876-CDS-Ecto-sp6_S_contig97:356397..356493Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 356398..356493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig97.18710.1prot_Ecto-sp6_S_contig97.18710.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig97 355977..356493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig97.18710.1

>prot_Ecto-sp6_S_contig97.18710.1 ID=prot_Ecto-sp6_S_contig97.18710.1|Name=mRNA_Ecto-sp6_S_contig97.18710.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=91bp
TTPTPHVSRRGTGRDGLWLPAGERREGGSFHVPEEALPNPLRDGPGDNHV
GRRREELPHRQLRGIHRGRHATLLPSQQAHVLPAPAQPVR*
back to top

mRNA from alignment at Ecto-sp6_S_contig97:355977..356493-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig97.18710.1 ID=mRNA_Ecto-sp6_S_contig97.18710.1|Name=mRNA_Ecto-sp6_S_contig97.18710.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=517bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:355977..356493- (Ectocarpus species6 EcLAC_371)
ACCACACCAACACCCCATGTCTCGCGGAGAGGGACAGGAAGGGATGGACT ATGGCTTCCCGCCGGCGAGAGGAGGGAGGGGGGCTCCTTCCATGTTGTGA GTGGCAGTGTAGTCGTGGCGGTTGTGGTGACGCGGATGTGCTCTCCTGCT GCTCCTCCGTCGTCGGGTCGAGTGTGGAGTATGCTTTTTCGACACAACAA AAAGGGAGACGGAATGATTAGACTTTCTACTTCTGCTGGGTGTAACTTTC GTCTCTCTCTCCGTCTGTCTCTGTCTCTCTTCCTGGGCTCTTTACCTTTA ACGTTCGTTACACAAACACACGCATGCTTTAACCATGCAGCCCGAGGAAG CTCTACCAAATCCTCTGCGAGACGGACCCGGAGATAATCACGTGGGACGA CGACGGGAAGAGCTTCCACATCGCCAACTACGAGGAATACATCGAGGGCG TCATGCCACTCTTTTACCGTCACAACAAGCTCACGTCCTTCCAGCGCCAG CTCAACCTGTACGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:355977..356493-

>mRNA_Ecto-sp6_S_contig97.18710.1 ID=mRNA_Ecto-sp6_S_contig97.18710.1|Name=mRNA_Ecto-sp6_S_contig97.18710.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:355977..356493- (Ectocarpus species6 EcLAC_371)
ACCACACCAACACCCCATGTCTCGCGGAGAGGGACAGGAAGGGATGGACT
ATGGCTTCCCGCCGGCGAGAGGAGGGAGGGGGGCTCCTTCCATGTTCCCG
AGGAAGCTCTACCAAATCCTCTGCGAGACGGACCCGGAGATAATCACGTG
GGACGACGACGGGAAGAGCTTCCACATCGCCAACTACGAGGAATACATCG
AGGGCGTCATGCCACTCTTTTACCGTCACAACAAGCTCACGTCCTTCCAG
CGCCAGCTCAACCTGTACGGTGA
back to top