mRNA_Ecto-sp6_S_contig97.18709.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig97.18709.1
Unique NamemRNA_Ecto-sp6_S_contig97.18709.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig97.18709.1 vs. uniprot
Match: D8LLB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLB3_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 9.650e-122
Identity = 205/228 (89.91%), Postives = 206/228 (90.35%), Query Frame = 1 
Query:    1 MMMIPGRDEDGGVADGSSIGARKRPSPSQGGWFYTSSTPAVSEGVAAARLKRATGGKAEMAGGNDHPATAGDPWAAGAARGNPYARSGAGAXXXXXXXXXX---PPEKSAHRDSYRYAPTNERHWETYRDQEDSYPMHPKVGGVGWYDSEESGLSRLTSCDSASSTWDEMHARPGAGGGGDVFNRXXXXXXXXXXXXXXXXXXXXXXXXGRDPRDPLRDRGGYPPHHP 675
            MMMIPGRD DGGVADGSSIGARKRPSPSQGGWFYTSSTPAVSEGVAAAR+KRATGGKAEMAGGNDHPA AGDPWAAGAARGNPYARSGAGAXXXXXXX      PPEKSAHRDSYRYAPTN RHWETYRDQEDSYPMHPKVGGVGWYDSEESGLSRLTSCDSASSTWDEMHARPGAGGGGDVFNR XXXXXXXXXXXXX          GRDPRDPLRDRGGY  HHP
Sbjct:    1 MMMIPGRDADGGVADGSSIGARKRPSPSQGGWFYTSSTPAVSEGVAAARIKRATGGKAEMAGGNDHPAAAGDPWAAGAARGNPYARSGAGAXXXXXXXPCSAGGPPEKSAHRDSYRYAPTNGRHWETYRDQEDSYPMHPKVGGVGWYDSEESGLSRLTSCDSASSTWDEMHARPGAGGGGDVFNRSXXXXXXXXXXXXXDAGGAGACAGGRDPRDPLRDRGGYSLHHP 228
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BLAST of mRNA_Ecto-sp6_S_contig97.18709.1 vs. uniprot
Match: A0A6H5JRR2_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR2_9PHAE)

HSP 1 Score: 314 bits (804), Expect = 9.560e-99
Identity = 180/228 (78.95%), Postives = 184/228 (80.70%), Query Frame = 1 
Query:    1 MMMIPGRDEDGGVADGSSIGARKRPSPSQGGWFYTSSTPAVSEGVAAARLKRATGGKAEMAGGNDHPATAGDPWAAGAARGNPYARSGAGAXXXXXXXXXXPP--EKSAHRDSYRYAPTNERHWETYRDQEDSYPMHPKVGGVGWYDSEESGLSRLTSCDSASSTWDEMHARPGAGGGG-DVFNRXXXXXXXXXXXXXXXXXXXXXXXXGRDPRDPLRDRGGYPPHHP 675
            MMMIPGRDEDGGVADGS IGARKRP PSQGGWFYTSSTPAVSEGVAAA LKR T GKAEMAGGNDHPA AGDPWAAGAARG+PYARSGA  XXXXXXXXXX    EKSA RD YRYAPTN RHW+TYRDQEDSYP+HPK G VGWYDSEESGLSRLTSCDSASSTWDEMHARPGAGGGG DVF+R                        GRDP DPLRDRGGYP HHP
Sbjct:  263 MMMIPGRDEDGGVADGSPIGARKRPPPSQGGWFYTSSTPAVSEGVAAAHLKRVTDGKAEMAGGNDHPAAAGDPWAAGAARGSPYARSGAXXXXXXXXXXXXXXXXEKSARRDLYRYAPTNGRHWDTYRDQEDSYPLHPKGGWVGWYDSEESGLSRLTSCDSASSTWDEMHARPGAGGGGGDVFDRSRSRAMAAMEMAPADAGG------GRDPHDPLRDRGGYPSHHP 484
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLB3_ECTSI9.650e-12289.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRR2_9PHAE9.560e-9978.95HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig97contigEcto-sp6_S_contig97:351645..352319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size675
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHeat Shock transcription factor
Ec32 orthologEc-27_001960.1
Cds size675
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350598.1617775-CDS-Ecto-sp6_S_contig97:351644..3523191682350598.1617775-CDS-Ecto-sp6_S_contig97:351644..352319Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 351645..352319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig97.18709.1prot_Ecto-sp6_S_contig97.18709.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig97 351645..352319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig97.18709.1

>prot_Ecto-sp6_S_contig97.18709.1 ID=prot_Ecto-sp6_S_contig97.18709.1|Name=mRNA_Ecto-sp6_S_contig97.18709.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=225bp
MMMIPGRDEDGGVADGSSIGARKRPSPSQGGWFYTSSTPAVSEGVAAARL
KRATGGKAEMAGGNDHPATAGDPWAAGAARGNPYARSGAGAAAAAAAAAG
GPPEKSAHRDSYRYAPTNERHWETYRDQEDSYPMHPKVGGVGWYDSEESG
LSRLTSCDSASSTWDEMHARPGAGGGGDVFNRSRSRAMVAMEMAPADAGG
AGAGAGGRDPRDPLRDRGGYPPHHP
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mRNA from alignment at Ecto-sp6_S_contig97:351645..352319-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig97.18709.1 ID=mRNA_Ecto-sp6_S_contig97.18709.1|Name=mRNA_Ecto-sp6_S_contig97.18709.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=675bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:351645..352319- (Ectocarpus species6 EcLAC_371)
ATGATGATGATACCGGGGAGAGACGAGGACGGGGGGGTCGCGGATGGGTC
TTCTATTGGTGCCCGCAAGAGGCCCTCCCCCTCCCAGGGGGGATGGTTCT
ACACGTCTTCCACCCCGGCCGTGTCCGAGGGCGTCGCTGCCGCTCGCCTC
AAGCGGGCCACGGGCGGGAAGGCAGAGATGGCCGGCGGCAACGATCACCC
CGCCACCGCGGGGGACCCGTGGGCGGCGGGAGCCGCCCGGGGCAACCCGT
ACGCCAGGAGCGGTGCCGGAGCTGCGGCGGCGGCGGCAGCCGCCGCAGGC
GGACCTCCTGAGAAGTCGGCTCACCGCGATTCGTACCGCTACGCGCCCAC
GAACGAGCGGCACTGGGAGACTTACCGAGACCAGGAGGACTCGTACCCGA
TGCACCCGAAGGTAGGGGGGGTTGGGTGGTACGATTCGGAAGAGTCTGGC
CTGTCGAGGCTGACATCGTGCGACAGCGCGTCCTCGACGTGGGACGAGAT
GCACGCGCGTCCCGGAGCGGGAGGGGGCGGGGACGTGTTCAACCGCAGCA
GGTCGAGAGCGATGGTGGCGATGGAGATGGCCCCCGCAGACGCAGGCGGC
GCCGGCGCCGGCGCCGGCGGGAGGGACCCCCGTGATCCGCTGCGCGACCG
GGGCGGGTACCCGCCCCACCACCCG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:351645..352319-

>mRNA_Ecto-sp6_S_contig97.18709.1 ID=mRNA_Ecto-sp6_S_contig97.18709.1|Name=mRNA_Ecto-sp6_S_contig97.18709.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=675bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:351645..352319- (Ectocarpus species6 EcLAC_371)
ATGATGATGATACCGGGGAGAGACGAGGACGGGGGGGTCGCGGATGGGTC
TTCTATTGGTGCCCGCAAGAGGCCCTCCCCCTCCCAGGGGGGATGGTTCT
ACACGTCTTCCACCCCGGCCGTGTCCGAGGGCGTCGCTGCCGCTCGCCTC
AAGCGGGCCACGGGCGGGAAGGCAGAGATGGCCGGCGGCAACGATCACCC
CGCCACCGCGGGGGACCCGTGGGCGGCGGGAGCCGCCCGGGGCAACCCGT
ACGCCAGGAGCGGTGCCGGAGCTGCGGCGGCGGCGGCAGCCGCCGCAGGC
GGACCTCCTGAGAAGTCGGCTCACCGCGATTCGTACCGCTACGCGCCCAC
GAACGAGCGGCACTGGGAGACTTACCGAGACCAGGAGGACTCGTACCCGA
TGCACCCGAAGGTAGGGGGGGTTGGGTGGTACGATTCGGAAGAGTCTGGC
CTGTCGAGGCTGACATCGTGCGACAGCGCGTCCTCGACGTGGGACGAGAT
GCACGCGCGTCCCGGAGCGGGAGGGGGCGGGGACGTGTTCAACCGCAGCA
GGTCGAGAGCGATGGTGGCGATGGAGATGGCCCCCGCAGACGCAGGCGGC
GCCGGCGCCGGCGCCGGCGGGAGGGACCCCCGTGATCCGCTGCGCGACCG
GGGCGGGTACCCGCCCCACCACCCG
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