mRNA_Ecto-sp6_S_contig97.18695.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig97.18695.1
Unique NamemRNA_Ecto-sp6_S_contig97.18695.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig97.18695.1 vs. uniprot
Match: D8LLC4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLC4_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 5.180e-6
Identity = 32/40 (80.00%), Postives = 32/40 (80.00%), Query Frame = -1 
Query:  352 PELSKRKLNSSHXXXXG----DEERGEGDGAEGGEPAEAS 459
            PELSKRKLNSSH    G    DEERGEGDGAEGGEPAEAS
Sbjct:  719 PELSKRKLNSSHEEEEGEXXGDEERGEGDGAEGGEPAEAS 758
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLC4_ECTSI5.180e-680.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig97contigEcto-sp6_S_contig97:221008..221586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size579
Hectar predicted targeting categoryother localisation
Exons1
Cds size579
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350594.4374819-CDS-Ecto-sp6_S_contig97:221007..2215861682350594.4374819-CDS-Ecto-sp6_S_contig97:221007..221586Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 221008..221586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig97.18695.1prot_Ecto-sp6_S_contig97.18695.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig97 221008..221586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig97.18695.1

>prot_Ecto-sp6_S_contig97.18695.1 ID=prot_Ecto-sp6_S_contig97.18695.1|Name=mRNA_Ecto-sp6_S_contig97.18695.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=193bp
RSNFNIRHEQTHVSPWSVIPLHNDLIGCTQSNDMHSLMLQANCRDSRSML
VSALGHPHQHCCSSNYTTWSVGSVFYTLRNVSTVPISTNNASRTRLKPIL
TTNGCAAQTSPSPESLLRSFCRLPSLRPVTLSSLLVPLLFLVAAVKFSFA
QLGFLSSPRCLLLLLLVLVLELNLLVIDLAPPKLALGAYHAAL
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mRNA from alignment at Ecto-sp6_S_contig97:221008..221586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig97.18695.1 ID=mRNA_Ecto-sp6_S_contig97.18695.1|Name=mRNA_Ecto-sp6_S_contig97.18695.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=579bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:221008..221586+ (Ectocarpus species6 EcLAC_371)
CGGTCCAACTTCAACATTCGTCACGAACAGACACACGTCAGTCCGTGGTC
CGTGATACCTCTACACAACGATCTGATTGGTTGCACTCAATCCAATGATA
TGCACTCTCTCATGTTACAGGCTAACTGTCGTGACTCTAGGTCTATGCTC
GTATCAGCACTAGGTCACCCACATCAGCACTGCTGTAGCAGCAACTACAC
TACTTGGTCGGTCGGTTCAGTCTTCTATACACTCAGAAACGTGTCGACCG
TTCCTATCTCAACCAATAACGCCTCGCGAACTAGACTGAAACCCATTCTT
ACCACAAACGGTTGTGCGGCGCAAACCTCTCCTTCCCCGGAATCGCTTCT
ACGAAGCTTCTGCCGGCTCCCCTCCCTCCGCCCCGTCACCCTCTCCTCTC
TCCTCGTCCCCCTCCTCTTCCTCGTGGCTGCTGTTAAGTTTTCTTTTGCT
CAGCTCGGGTTCCTTTCCTCCCCCAGGTGCCTCCTCCTTCTCCTCCTCGT
CCTCGTCCTCGAGTTGAATCTCCTCGTCATCGACCTCGCCCCCCCCAAGC
TTGCGCTTGGTGCCTACCACGCCGCCCTC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:221008..221586+

>mRNA_Ecto-sp6_S_contig97.18695.1 ID=mRNA_Ecto-sp6_S_contig97.18695.1|Name=mRNA_Ecto-sp6_S_contig97.18695.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=579bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:221008..221586+ (Ectocarpus species6 EcLAC_371)
CGGTCCAACTTCAACATTCGTCACGAACAGACACACGTCAGTCCGTGGTC
CGTGATACCTCTACACAACGATCTGATTGGTTGCACTCAATCCAATGATA
TGCACTCTCTCATGTTACAGGCTAACTGTCGTGACTCTAGGTCTATGCTC
GTATCAGCACTAGGTCACCCACATCAGCACTGCTGTAGCAGCAACTACAC
TACTTGGTCGGTCGGTTCAGTCTTCTATACACTCAGAAACGTGTCGACCG
TTCCTATCTCAACCAATAACGCCTCGCGAACTAGACTGAAACCCATTCTT
ACCACAAACGGTTGTGCGGCGCAAACCTCTCCTTCCCCGGAATCGCTTCT
ACGAAGCTTCTGCCGGCTCCCCTCCCTCCGCCCCGTCACCCTCTCCTCTC
TCCTCGTCCCCCTCCTCTTCCTCGTGGCTGCTGTTAAGTTTTCTTTTGCT
CAGCTCGGGTTCCTTTCCTCCCCCAGGTGCCTCCTCCTTCTCCTCCTCGT
CCTCGTCCTCGAGTTGAATCTCCTCGTCATCGACCTCGCCCCCCCCAAGC
TTGCGCTTGGTGCCTACCACGCCGCCCTC
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