mRNA_Ecto-sp6_S_contig97.18694.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig97.18694.1
Unique NamemRNA_Ecto-sp6_S_contig97.18694.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18694.1 vs. uniprot
Match: A0A6H5JVV9_9PHAE (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JVV9_9PHAE)

HSP 1 Score: 855 bits (2209), Expect = 5.320e-304
Identity = 580/723 (80.22%), Postives = 589/723 (81.47%), Query Frame = 1 
Query:    1 MPVHKLLHRRTPSPVMPTSSSXXXXXXXXXXXXXXXXXXXXXXXXSPASKYPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRSTKASPARVAVPVSPASADTGTGTPPPAAHLNGRGXXXXXXXXXXXTTNGAAVDDKHPRSATPSPPPAPVSRGALPWPRPPALVGGAGGGCGPFLQGQDQQQQPSTSGGREVTPDGMTPHNNTVPAKRQRQEGTNSWGPYPDTAAAGPATTAGGHNAAAREEWQQWPGASNPSSSFSSDATAANAIAEQEAVKAQAQSALDQNDVEVVSLLQRMAKEAQDSPARKRVALAAQQWEGARAQQAAAGESSPARHAQQXXXXXXXXXA--RFEKPRPAPA---GSNEGGQTQQMVFAERLYDILSHERLAAGGGAAASQQARFLSLAFGTEGRAAPPGFPQKQYQQHYQGAGLPSPFGSTATTASCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDPSESVESTHRRGGEGEEGTAATGGMVMSEQERQALLARSRSGPSAAXXXVAAAXXXXXXXXXXXXXXXAGYSRDDEHRYYQQQQDAGYMYDRSPDKSPLRRGGVFSFGSGRFGSGAPQGSGGGALPPLPSLNFEQYKIGGXXXXXXXPVGVGEIRRAPWYGPESSYAPPPIGSYVN 2154
            MPVHKLLHRRTPSPVMP SSS    XXXXXXXXXXXXXXXXXXX SPASKYPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRSTKASPARVAVPVSPAS                  XXXXXXXXXXX                       VSRG+LPWPRPPALVGGAGGG GPF QGQ QQ++PSTSG  EVTPDG   +NNTVPAKRQRQEG NSWGPYPDTAA+ P                              D T+ANA AEQEAV AQAQSALDQNDVEVVSLLQRMAKEAQDSPARKRVALAAQQWEGARAQQAAA ESSPARHAQQXXXXXXXXX   RFEKPRPA     GS E GQTQQMVFAERLYD LSHERL AGGGAAASQQARFLSLAFGTEGRAAPPGFP KQYQQHYQGAGLPSPFGSTATTASCXXXXXXXXXXXX                  QDPSES EST RRGGEGEEGTA TGGMVMSEQERQALLAR RSGPSAA   VAA XXXXXXXXXXXXXXXAGY+RDDEHRYYQQQQDAGYMYDRSPD+S L RGG FSFGSGRFGSGAPQGSGGGALPPLPSLNFEQY +GGXXXXXXXPVGVGEIRRAPWYGPESSYAPPPIGSYVN
Sbjct:    1 MPVHKLLHRRTPSPVMPASSSRTPSXXXXXXXXXXXXXXXXXXX-SPASKYPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRSTKASPARVAVPVSPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----VSRGSLPWPRPPALVGGAGGG-GPFQQGQGQQREPSTSGAHEVTPDGTITNNNTVPAKRQRQEG-NSWGPYPDTAASAPTXXXXXXXXXXXXXXXXX----XXXXXXXXDITSANAAAEQEAVMAQAQSALDQNDVEVVSLLQRMAKEAQDSPARKRVALAAQQWEGARAQQAAACESSPARHAQQXXXXXXXXXXXXRFEKPRPAXXXXXGSGEAGQTQQMVFAERLYDFLSHERLGAGGGAAASQQARFLSLAFGTEGRAAPPGFPHKQYQQHYQGAGLPSPFGSTATTASCXXXXXXXXXXXXFSHLPPPQLQEQPCRR--QDPSESEESTLRRGGEGEEGTA-TGGMVMSEQERQALLARPRSGPSAAAAAVAAVXXXXXXXXXXXXXXXAGYTRDDEHRYYQQQQDAGYMYDRSPDRSLLGRGGGFSFGSGRFGSGAPQGSGGGALPPLPSLNFEQYSVGGXXXXXXXPVGVGEIRRAPWYGPESSYAPPPIGSYVN 709
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18694.1 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK)

HSP 1 Score: 135 bits (339), Expect = 1.600e-30
Identity = 64/108 (59.26%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:  148 KYPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRSTKAS 471
            KYPR G+RGAPQAF  KLYEILE E  D++ W A G  F VRD  R S E+L ++F+  KF+SFQRQLNLYGFRKIT+GS++GSY H +FR+G+   L  +RRS  +S
Sbjct:    2 KYPRTGQRGAPQAFARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFRKITRGSDAGSYAHQYFRKGKPDLLSLVRRSQSSS 109
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18694.1 vs. uniprot
Match: A0A7S2G7U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7U9_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.900e-29
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:  148 KYPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRR 456
            KYPR G+RGAPQ FP KLYEIL  E  D++GWT++G+ F + +     +E+L  +F+  K+SSFQRQLNLYGFRKI KG ++G+Y H HF R +  +L  +RR
Sbjct:   94 KYPRTGRRGAPQVFPRKLYEILTNERSDVIGWTSSGKSFIILEMEIFVNEILMNYFRHQKYSSFQRQLNLYGFRKIQKGPDTGAYAHEHFLRDQPESLTFVRR 196
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18694.1 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.940e-28
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:  148 KYPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRR 456
            KYPR G+RGAPQ FP KLYEIL  E  DI+GWT +G+ F +++     + +L ++F+  K+SSFQRQLNLYGFRK+ KG++ GSY H  F R +   L  +RR
Sbjct:    2 KYPRTGRRGAPQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYGFRKVQKGTDVGSYAHECFIRDQPELLTKVRR 104
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18694.1 vs. uniprot
Match: A0A835YGA3_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGA3_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.730e-28
Identity = 59/110 (53.64%), Postives = 79/110 (71.82%), Query Frame = 1 
Query:  148 KYPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRSTKASPA 477
            +YPRFGKRGAPQAF +KL+E+L  E+PDIV WT +G  F + D  + +SE L ++FK +  +SFQRQLNLYGFRK  KG +SG +QH  F+R     L+ +RR+ +AS A
Sbjct:   16 RYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQA 125
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18694.1 vs. uniprot
Match: A0A7S2WKC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKC6_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.860e-27
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:  148 KYPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRS 459
            KYPR GKRGAPQAF  KLYEILE E+ +++ W+ TGR F ++D     S+VL ++F+  K+SSFQRQLNLYGFRK TKG + G Y H +F R  R  L  +RR+
Sbjct:   72 KYPRTGKRGAPQAFAHKLYEILEAESTEVIAWSGTGRAFFIKDMDIFVSQVLLKYFRHVKYSSFQRQLNLYGFRKATKGQDVGGYYHHYFMRSRRDLLPFVRRT 175
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18694.1 vs. uniprot
Match: A0A7S2R5C8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5C8_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.680e-27
Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = 1 
Query:  136 SPASKYPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRS 459
            S A +YPR GKRGAPQ FP KLYEIL+ E+ D + WT +G  F ++D     + VL ++F+  KFSSFQRQLNLYGFRKI+KG+E+G+Y H  F R +   L  +RR+
Sbjct:   60 SDAMRYPRTGKRGAPQVFPRKLYEILDNESEDTISWTESGHSFVIKDMETFVTSVLMKYFRHQKFSSFQRQLNLYGFRKISKGTETGAYCHEFFARDQTDKLRLVRRT 167
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18694.1 vs. uniprot
Match: D8LU68_ECTSI (Heat Shock transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU68_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 9.860e-26
Identity = 53/100 (53.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:  157 RFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRR 456
            RFGKRG+ QAF   L++IL+ E+P ++GW+A+G+ F + D  +   E++ RFFKQ+K+SSFQRQLNLYGFRK+ +G+E+G Y HP F RG+   L  +RR
Sbjct:   42 RFGKRGSGQAFALGLFQILKTEDPKVIGWSASGKAFRIGDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRR 141
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18694.1 vs. uniprot
Match: A0A835Z6Z9_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Z9_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.160e-25
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:  163 GKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRR 456
            GKRGAPQAFP +LYE+L+ E+  +V W   G GF + D     +  L ++F+ +K++SFQRQ NLYGFRKIT+G ++G Y H HF++G    L+ +RR
Sbjct:    1 GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR 98
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18694.1 vs. uniprot
Match: A0A7S2WU52_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU52_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.490e-25
Identity = 62/134 (46.27%), Postives = 83/134 (61.94%), Query Frame = 1 
Query:  148 KYPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRSTKASPARVAVPVSPASADTGTGTPPPAAHL 549
            +YPR GKRGAPQ F  KLYEIL+ E PD + WT +G  F +++     + VL ++F+  K+SSFQRQLNLYGFRKI+KGS++G+Y H  F RG+   L  +RR  ++S + V                PP AHL
Sbjct:  156 RYPRTGKRGAPQVFARKLYEILDNEPPDAISWTTSGTSFVIKEMDAFVTCVLMKYFRHQKYSSFQRQLNLYGFRKISKGSDAGAYAHESFIRGQPELLHFVRRMPQSSSSPV----------------PPVAHL 273
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVV9_9PHAE5.320e-30480.22HSF_DOMAIN domain-containing protein n=2 Tax=Ectoc... [more]
A0A6V1QFS1_HETAK1.600e-3059.26Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2G7U9_9STRA4.900e-2953.40Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2BSE7_9STRA2.940e-2852.43Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A835YGA3_9STRA3.730e-2853.64HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A7S2WKC6_9STRA1.860e-2755.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2R5C8_9STRA2.680e-2753.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D8LU68_ECTSI9.860e-2653.00Heat Shock transcription factor (Partial) (Fragmen... [more]
A0A835Z6Z9_9STRA1.160e-2548.98HSF-type DNA-binding-domain-containing protein (Fr... [more]
A0A7S2WU52_9STRA1.490e-2546.27Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig97contigEcto-sp6_S_contig97:200568..205330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score103.6
Seed ortholog evalue3.9e-19
Seed eggNOG ortholog2850.Phatr43051
Preferred nameSFL1
Model size2157
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000128,GO:0000228,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001085,GO:0001103,GO:0001558,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006355,GO:0006357,GO:0008134,GO:0008150,GO:0009268,GO:0009405,GO:0009607,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016458,GO:0019219,GO:0019222,GO:0030308,GO:0030447,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0035690,GO:0036176,GO:0036177,GO:0036178,GO:0036180,GO:0036244,GO:0040007,GO:0040008,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043900,GO:0043901,GO:0044182,GO:0044212,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045892,GO:0045893,GO:0045926,GO:0045934,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051704,GO:0051716,GO:0060255,GO:0060256,GO:0060257,GO:0060258,GO:0065007,GO:0070013,GO:0070491,GO:0070784,GO:0070785,GO:0070887,GO:0071214,GO:0071467,GO:0080090,GO:0097159,GO:0098630,GO:0098743,GO:0104004,GO:0140110,GO:1900428,GO:1900429,GO:1900460,GO:1900462,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2000217,GO:2000218,GO:2000220,GO:2000221,GO:2001141
Exons3
EggNOG free text desc.heat shock factor
EggNOG OGs2XHAM@2836,COG5169@1,KOG0627@2759
Ec32 ortholog descriptionHeat Shock transcription factor
Ec32 orthologEc-27_002110.1
Cds size2157
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350596.7367492-CDS-Ecto-sp6_S_contig97:200567..2014101682350596.7367492-CDS-Ecto-sp6_S_contig97:200567..201410Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 200568..201410 -
1682350596.7505627-CDS-Ecto-sp6_S_contig97:201572..2026191682350596.7505627-CDS-Ecto-sp6_S_contig97:201572..202619Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 201573..202619 -
1682350596.7598605-CDS-Ecto-sp6_S_contig97:205063..2053301682350596.7598605-CDS-Ecto-sp6_S_contig97:205063..205330Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 205064..205330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig97.18694.1prot_Ecto-sp6_S_contig97.18694.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig97 200568..205330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig97.18694.1

>prot_Ecto-sp6_S_contig97.18694.1 ID=prot_Ecto-sp6_S_contig97.18694.1|Name=mRNA_Ecto-sp6_S_contig97.18694.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=719bp
MPVHKLLHRRTPSPVMPTSSSSRTPSNSTTPAAAAAAPTAAAAAASPASK
YPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEV
LGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTI
RRSTKASPARVAVPVSPASADTGTGTPPPAAHLNGRGGGNNNNSNNVSTT
NGAAVDDKHPRSATPSPPPAPVSRGALPWPRPPALVGGAGGGCGPFLQGQ
DQQQQPSTSGGREVTPDGMTPHNNTVPAKRQRQEGTNSWGPYPDTAAAGP
ATTAGGHNAAAREEWQQWPGASNPSSSFSSDATAANAIAEQEAVKAQAQS
ALDQNDVEVVSLLQRMAKEAQDSPARKRVALAAQQWEGARAQQAAAGESS
PARHAQQQQQQQQQQQARFEKPRPAPAGSNEGGQTQQMVFAERLYDILSH
ERLAAGGGAAASQQARFLSLAFGTEGRAAPPGFPQKQYQQHYQGAGLPSP
FGSTATTASCSSSPSSSSASSAAFSHLPPPSQLQEQPRRRQDPSESVEST
HRRGGEGEEGTAATGGMVMSEQERQALLARSRSGPSAAAAAVAAAEQDRQ
ALLARARTGPAGYSRDDEHRYYQQQQDAGYMYDRSPDKSPLRRGGVFSFG
SGRFGSGAPQGSGGGALPPLPSLNFEQYKIGGGGGGGGGPVGVGEIRRAP
WYGPESSYAPPPIGSYVN*
back to top

mRNA from alignment at Ecto-sp6_S_contig97:200568..205330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig97.18694.1 ID=mRNA_Ecto-sp6_S_contig97.18694.1|Name=mRNA_Ecto-sp6_S_contig97.18694.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4763bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:200568..205330- (Ectocarpus species6 EcLAC_371)
ATGCCTGTGCATAAACTTCTCCACAGGCGAACACCTTCGCCAGTCATGCC
CACATCATCATCGTCTCGGACACCTAGCAACAGCACAACGCCTGCTGCGG
CCGCCGCGGCCCCGACTGCCGCTGCTGCCGCTGCTTCGCCGGCGTCAAAG
TACCCGCGATTCGGCAAGCGTGGAGCCCCGCAGGCTTTCCCTTCCAAGCT
GTACGAGATTCTGGAGGGCGAGAACCCGGACATTGTGGGATGGACTGCAA
CGGGAAGGGGGTTCGAGGTGAGAGGTGCCTCCGTGTTGGTGTGTGTGTGT
GTGTAATTTGTGTTTGACAGGTTTGTGGTGTTGCAACGACATGCCACACG
GATATCCATCTACATCCTTCGCCGCCGGACACTGCTGCTGCGCTGTGCCT
TTTGCAGCAGCAGCAGCAGCATCTGCGGTGCTTGCTCGCACGTTGGTGGT
GCTCGGTTATTTACAGGCCCTGGGGTGTTTGCTGCTTGCTGCCGCTGTGC
TGGTTGTTGCTCGTTCTCTCTTCCGCCGATTTTTCGGAATATCTCTTTCG
AGCGAGCGAATCTGTGCACGTCTCTCTCTATATGTCTTTCTTTTCCGTCT
CTCCGTTGTAGCTCTCTTCTTCTCTGCCGACCGCAAACGAAAACAAGTGC
AATGCGCTTGGATGCACCGTGCACACCCTCGGGAGTGCGCTCTGTTTGCC
ATTATTGCCAAAGCACGCGTGCCCCTCTACTCAAGCAACGCGCTCTCCTT
TCTCGTGCCAGACCCGGCCCAAAAAACAATCATTCCTTCTGTTTTAATTT
CTCTCCGGCAACGACCCTGCTGCCAAGCAGCGCTTCGGGTTGTCCGATTT
TTTCTTTCTCACGATGCGCTGAGTACAGCGAAACGAATCCATCTGTATCT
CTATCCATAGATATTGTAGGAGTACATATGTCTACGAAAGATTTGCAATC
GATCCGTAGCGTCAGCGGAAGCTGCCACGATTTCCCGAGCAGCATATTGC
TGTGTGGTCTACAAGACAGCAGTTTGTCCGACGAGTGTTGATTTATTCTG
CGCATTTTTTTTTTACCTACACACACACGCACCCAAGGGCACTTCAGCCA
AGCAACGAAGTCTGTGGCATTGATAATCTGCGTACACCAGGGTGTGCCAG
GTGAACCCCACTCCTCTTGTCCGATCGGCGATCCCCACCAAAACAAGATG
TAGGTGCCAGGCCGTCGGTGTGTGACGCCTCTCTCGTGCTGTTCGCTCAC
GAGACGCTCCCCCACTGGTGCTGCTGCGGGTCATTGCACATAACTTGCGA
CCCAACACGAACCGCTCTCGCAACGATATGAAGAGAGACCGGTTTACACC
CGCCAAAGTTGCAACTTTCAACCCTTTTTCTTCCTTGCAAGAAACGAATA
TTTTTGAGGCTCTTTCTACACAGAGCGCCTGCCATTGTTGGAGTCTGTTG
GCTTCTTTCGCCGCCGGGTCGACTGCGCTGGGTTGGTTGCGCGCGTGCTG
TTTGCTGGGGTTGGCGAACGGAGGAACTGACAGCCATCATGTTGCTGCTG
TAAACATATTCCCATTTTTGCGCGAAACCAAAAGACAATTCTCAGCAAGA
AAGATCGCTCGTTTTTTTTTCAGAAATTGAGCCTTTCCCGGCAGGCGGTT
AATTCTTTTCATTTCGGTGCAGTCAGCAAACTGGTGTACAAGTGCGTATG
ATAGTATCAGGGCTTCATTTTTGCCTTGCCTGCGACATGATGGATGGTAT
CGCGAGATTGTCCCATAACCCGAGTCTTGCTGTGCCTACGCACTACGGAA
AGAGGAACTACTGCTATTGTCATGCTGTTTAATGTGGTTATTTTTACACA
TCTATCATGACCAAAATATGTCTGTCGGAGCGCGTCATTACTTTCTGTAC
CCCCGCTCCCCTGCGCTCCCCCCGTTGCGCTTAAGAATAAGTCCGGCGAG
GATACGGAACAGAAAAATTGATGGATTTCTGTCGACGCAGTGCAAGCGGG
CACCATCTCCGGTCATCTCTCACCCTGTGTGCAGTGCAAGTTCGTGGCGT
TGCCAAGCCTCGTTTGCGTGTTCTCTGATGCGGATTTTGTTGTTGGGTGG
TTGGTGGGTGAAGGAAAACATCATGGATCGATTATTCATCACATTGGGTT
GTCTTTGTTGAGACAAGGATTTCGGTTCTTTGCCTTCGGGAAGGAGGAGC
TCGAAATCGAAATCGAAGGGAGGCACACATGAAAAAACATTTTTTTTCTC
TGCCGCTGTATCTGTAGTGCCTGACAGACCCGCCGCGGTCATGACGCATC
CATGTGGTCTCAAGCCAAGCTTGTTGGTCGCATTGGTCTTGAACGAACAT
CAACCCCACAGCGGCGGCACTACAAAAAAAAATCATCTGCTGAACAGCAG
ATGGCATCTGCTGAACCTGCTGAACAGCAGGTGACATCTGCTGAACAGCA
GATCAGGGATAAATTAGCAACGAATACTGAATTGTAGCGTTAGCGGATAC
CTGCAAAATCTGTTTCTACAGATTTTTCCAAGCAGCAACGCAGCAGTAGC
TCGTTGTCAACCTTGCTCCACTCAGTCGCTCGCTGCGCCTCTGGTACGCA
CCACTTCATTTGTACTTGCTTGCATTCACGCCCTAGTCTCATGCCTCTTG
GATGCCGTTGTTGTTCTGACCACCGGCGGCACCCCATACCGTAACCCCGA
ACAAATCTCAGGTCCGCGACCACGCCCGGTTGAGCTCCGAAGTGTTGGGC
CGCTTCTTCAAGCAGGACAAGTTCTCCAGCTTCCAGCGCCAGCTCAACCT
GTACGGCTTCCGCAAGATCACCAAGGGCAGCGAGAGCGGCTCCTACCAGC
ACCCCCACTTCCGCCGCGGCGAGCGCACGACCCTCCTCACCATCCGCCGA
TCGACCAAGGCCTCTCCCGCCCGCGTCGCCGTCCCGGTCTCCCCGGCGTC
CGCCGACACCGGCACCGGCACCCCTCCGCCCGCGGCCCACCTCAACGGTC
GCGGCGGCGGCAACAACAACAACAGCAACAATGTATCCACCACGAACGGC
GCCGCCGTCGACGACAAGCACCCGAGATCCGCGACGCCGAGCCCGCCCCC
CGCCCCCGTGTCTCGCGGCGCGCTCCCGTGGCCCCGCCCCCCCGCTCTCG
TTGGCGGCGCCGGCGGCGGTTGCGGCCCCTTTCTGCAGGGGCAGGATCAA
CAACAGCAGCCGTCGACATCGGGCGGCCGCGAGGTCACCCCGGACGGCAT
GACTCCCCACAACAACACGGTCCCTGCAAAAAGGCAACGGCAGGAAGGGA
CCAACAGCTGGGGTCCCTACCCGGACACAGCCGCCGCCGGCCCTGCCACC
ACCGCGGGAGGCCACAACGCTGCAGCTCGGGAAGAGTGGCAGCAGTGGCC
GGGCGCCTCCAACCCCTCCTCTTCCTTCTCCTCCGACGCGACAGCCGCCA
ATGCCATCGCCGAACAGGAGGCCGTTAAGGCGCAGGCGCAGTCCGCGCTC
GACCAAAACGACGTCGAGGTTGTGAGCCTGCTGCAACGGATGGCGAAGGA
GGCGCAGGATAGCCCGGCGCGGAAACGGGTCGCGCTGGCGGCGCAGCAGT
GGGAAGGGGCACGGGCTCAGCAGGCCGCCGCGGGCGAATCCTCTCCCGCG
CGACACGCGCAGCAACAACAACAGCAGCAGCAGCAGCAGCAGGCCCGTTT
CGAGAAGCCCCGACCGGCGCCGGCGGGATCTAACGAAGGCGGGCAAACCC
AGCAGATGGTGAGTTGTAACCGTAGGGGAACAAACGAGTGTATAGGGAGT
GAGTTGTCGTGCCACCAGTTTAGGGGTGCTTGCGCGTGCTCCACAGCTCC
TGTTGTGAAATCTGCCAGTTCTCTCCTTAAACTGCTTTCGCGGCCCGCTG
TTTTCTTTCTTGGGGTGCAGGTGTTCGCCGAGCGTTTGTACGACATCCTG
AGCCACGAGCGCCTTGCTGCCGGCGGCGGCGCCGCGGCCTCCCAGCAGGC
GAGGTTCTTGTCGCTGGCGTTCGGCACGGAGGGTAGGGCGGCACCTCCAG
GGTTCCCGCAGAAGCAGTACCAGCAGCACTACCAGGGCGCGGGGCTCCCC
TCGCCGTTCGGTTCTACGGCAACGACGGCCTCGTGTTCCTCTTCCCCCTC
TTCCTCCTCGGCGTCGTCCGCTGCGTTTTCGCACCTGCCGCCGCCGTCGC
AGCTGCAGGAGCAGCCGCGTCGCCGCCAGGATCCGTCCGAGTCGGTGGAG
TCGACGCACCGGCGGGGCGGCGAGGGTGAGGAAGGGACAGCAGCAACAGG
CGGGATGGTGATGTCGGAGCAAGAACGGCAGGCTCTTCTCGCGCGCTCGC
GCTCGGGGCCTTCGGCCGCCGCCGCCGCCGTCGCAGCCGCTGAGCAGGAC
AGACAGGCGCTGCTCGCGCGCGCCCGCACCGGCCCGGCCGGCTACTCCCG
CGACGACGAGCACCGGTACTACCAGCAGCAGCAAGACGCCGGCTACATGT
ACGACCGCAGCCCCGACAAGTCGCCGTTGCGGAGGGGAGGAGTGTTCTCG
TTCGGGAGCGGCAGGTTCGGGTCGGGTGCGCCGCAGGGCTCTGGCGGCGG
CGCGTTGCCGCCGCTCCCAAGCCTCAACTTCGAGCAGTACAAGATCGGTG
GCGGTGGCGGAGGCGGTGGTGGCCCTGTTGGTGTGGGAGAGATCCGCCGC
GCGCCGTGGTACGGACCCGAGTCGTCGTATGCGCCTCCGCCAATCGGCAG
CTACGTGAACTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:200568..205330-

>mRNA_Ecto-sp6_S_contig97.18694.1 ID=mRNA_Ecto-sp6_S_contig97.18694.1|Name=mRNA_Ecto-sp6_S_contig97.18694.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2157bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:200568..205330- (Ectocarpus species6 EcLAC_371)
ATGCCTGTGCATAAACTTCTCCACAGGCGAACACCTTCGCCAGTCATGCC
CACATCATCATCGTCTCGGACACCTAGCAACAGCACAACGCCTGCTGCGG
CCGCCGCGGCCCCGACTGCCGCTGCTGCCGCTGCTTCGCCGGCGTCAAAG
TACCCGCGATTCGGCAAGCGTGGAGCCCCGCAGGCTTTCCCTTCCAAGCT
GTACGAGATTCTGGAGGGCGAGAACCCGGACATTGTGGGATGGACTGCAA
CGGGAAGGGGGTTCGAGGTCCGCGACCACGCCCGGTTGAGCTCCGAAGTG
TTGGGCCGCTTCTTCAAGCAGGACAAGTTCTCCAGCTTCCAGCGCCAGCT
CAACCTGTACGGCTTCCGCAAGATCACCAAGGGCAGCGAGAGCGGCTCCT
ACCAGCACCCCCACTTCCGCCGCGGCGAGCGCACGACCCTCCTCACCATC
CGCCGATCGACCAAGGCCTCTCCCGCCCGCGTCGCCGTCCCGGTCTCCCC
GGCGTCCGCCGACACCGGCACCGGCACCCCTCCGCCCGCGGCCCACCTCA
ACGGTCGCGGCGGCGGCAACAACAACAACAGCAACAATGTATCCACCACG
AACGGCGCCGCCGTCGACGACAAGCACCCGAGATCCGCGACGCCGAGCCC
GCCCCCCGCCCCCGTGTCTCGCGGCGCGCTCCCGTGGCCCCGCCCCCCCG
CTCTCGTTGGCGGCGCCGGCGGCGGTTGCGGCCCCTTTCTGCAGGGGCAG
GATCAACAACAGCAGCCGTCGACATCGGGCGGCCGCGAGGTCACCCCGGA
CGGCATGACTCCCCACAACAACACGGTCCCTGCAAAAAGGCAACGGCAGG
AAGGGACCAACAGCTGGGGTCCCTACCCGGACACAGCCGCCGCCGGCCCT
GCCACCACCGCGGGAGGCCACAACGCTGCAGCTCGGGAAGAGTGGCAGCA
GTGGCCGGGCGCCTCCAACCCCTCCTCTTCCTTCTCCTCCGACGCGACAG
CCGCCAATGCCATCGCCGAACAGGAGGCCGTTAAGGCGCAGGCGCAGTCC
GCGCTCGACCAAAACGACGTCGAGGTTGTGAGCCTGCTGCAACGGATGGC
GAAGGAGGCGCAGGATAGCCCGGCGCGGAAACGGGTCGCGCTGGCGGCGC
AGCAGTGGGAAGGGGCACGGGCTCAGCAGGCCGCCGCGGGCGAATCCTCT
CCCGCGCGACACGCGCAGCAACAACAACAGCAGCAGCAGCAGCAGCAGGC
CCGTTTCGAGAAGCCCCGACCGGCGCCGGCGGGATCTAACGAAGGCGGGC
AAACCCAGCAGATGGTGTTCGCCGAGCGTTTGTACGACATCCTGAGCCAC
GAGCGCCTTGCTGCCGGCGGCGGCGCCGCGGCCTCCCAGCAGGCGAGGTT
CTTGTCGCTGGCGTTCGGCACGGAGGGTAGGGCGGCACCTCCAGGGTTCC
CGCAGAAGCAGTACCAGCAGCACTACCAGGGCGCGGGGCTCCCCTCGCCG
TTCGGTTCTACGGCAACGACGGCCTCGTGTTCCTCTTCCCCCTCTTCCTC
CTCGGCGTCGTCCGCTGCGTTTTCGCACCTGCCGCCGCCGTCGCAGCTGC
AGGAGCAGCCGCGTCGCCGCCAGGATCCGTCCGAGTCGGTGGAGTCGACG
CACCGGCGGGGCGGCGAGGGTGAGGAAGGGACAGCAGCAACAGGCGGGAT
GGTGATGTCGGAGCAAGAACGGCAGGCTCTTCTCGCGCGCTCGCGCTCGG
GGCCTTCGGCCGCCGCCGCCGCCGTCGCAGCCGCTGAGCAGGACAGACAG
GCGCTGCTCGCGCGCGCCCGCACCGGCCCGGCCGGCTACTCCCGCGACGA
CGAGCACCGGTACTACCAGCAGCAGCAAGACGCCGGCTACATGTACGACC
GCAGCCCCGACAAGTCGCCGTTGCGGAGGGGAGGAGTGTTCTCGTTCGGG
AGCGGCAGGTTCGGGTCGGGTGCGCCGCAGGGCTCTGGCGGCGGCGCGTT
GCCGCCGCTCCCAAGCCTCAACTTCGAGCAGTACAAGATCGGTGGCGGTG
GCGGAGGCGGTGGTGGCCCTGTTGGTGTGGGAGAGATCCGCCGCGCGCCG
TGGTACGGACCCGAGTCGTCGTATGCGCCTCCGCCAATCGGCAGCTACGT
GAACTGA
back to top