mRNA_Ecto-sp6_S_contig97.18692.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig97.18692.1
Unique NamemRNA_Ecto-sp6_S_contig97.18692.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig97.18692.1 vs. uniprot
Match: D8LLC7_ECTSI (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLC7_ECTSI)

HSP 1 Score: 471 bits (1211), Expect = 4.360e-167
Identity = 248/262 (94.66%), Postives = 249/262 (95.04%), Query Frame = 1 
Query:    1 MRVFESALTLAGGLFACRTASAFVAPEASIRQEDWALRNAPAGGASTTSTYGSSRGAPATRMMAAEGVTFGELDGTDVRVGIISTRWNEEIVNRLTDGVKESLKECNVTDSNIFETKVPGAFELPLAARFLSLSQTVDAVVCVGCLIKGDTMHFEYIAESTCKGLMDVSIQTSTPVVLGVLTCTEEEQAIKRSTGDNNHGVDWGKTAVEMGLLRMSATGVGKKASKSKHGAGGALGFGKSLDDKKDGKDGAIPGSMPKKIGF 786
            MRVFESALTLAGGLFACRTASAFVAP ASIR    ALRNAPAGGASTTSTYGSSRGAPATRMMAAEGVTFGELDGTDVRVGIISTRWNEEIVNRLTDGVKESLKECNVT+SNIFETKVPGAFELPLAARFLSLSQTVDAVVCVGCLIKGDTMHFEYIAESTCKGLMDVSIQTSTPVVLGVLTCTEEEQAIKRSTGDNNHGVDWGKTAVEMGLLRMSATGVGKKA       GGALGFGKSLDDKKDGKDGAIPGS PKKIGF
Sbjct:    1 MRVFESALTLAGGLFACRTASAFVAPAASIR----ALRNAPAGGASTTSTYGSSRGAPATRMMAAEGVTFGELDGTDVRVGIISTRWNEEIVNRLTDGVKESLKECNVTESNIFETKVPGAFELPLAARFLSLSQTVDAVVCVGCLIKGDTMHFEYIAESTCKGLMDVSIQTSTPVVLGVLTCTEEEQAIKRSTGDNNHGVDWGKTAVEMGLLRMSATGVGKKA-------GGALGFGKSLDDKKDGKDGAIPGSKPKKIGF 251
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BLAST of mRNA_Ecto-sp6_S_contig97.18692.1 vs. uniprot
Match: A0A7S2RMT1_9STRA (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMT1_9STRA)

HSP 1 Score: 236 bits (603), Expect = 5.160e-75
Identity = 123/195 (63.08%), Postives = 143/195 (73.33%), Query Frame = 1 
Query:  202 VTFGELDGTDVRVGIISTRWNEEIVNRLTDGVKESLKECNVTDSNIFETKVPGAFELPLAARFLSLSQTVDAVVCVGCLIKGDTMHFEYIAESTCKGLMDVSIQTSTPVVLGVLTCTEEEQAIKRSTGDNNHGVDWGKTAVEMGLLRMSATGVGKKASKSKHGAGGALGFGKSLDDKKDGKDGAIPGSMPKKIGF 786
            V FGEL+G   R+GIISTRWN EI+  L  GVK++L+EC V D+NIFET+VPGAFELPLAARFL+LS TVDAVVCVGCLIKGDTMHFEYI ++   GLM+V +QTSTPVV GVLT  +EEQA  RSTG+NNHG+ WGKTAVEM LLR SA G GK  S S       +GFG +   K D     +PG   +  GF
Sbjct:   43 VDFGELNGESCRIGIISTRWNPEIIGDLKSGVKQALEECKVKDANIFETEVPGAFELPLAARFLALSGTVDAVVCVGCLIKGDTMHFEYICDTVSSGLMNVGLQTSTPVVFGVLTVMDEEQAKARSTGENNHGLSWGKTAVEMALLRQSALGQGKSMSMS-------MGFGNATKVKDD----VLPGD--RSFGF 224
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BLAST of mRNA_Ecto-sp6_S_contig97.18692.1 vs. uniprot
Match: A0A6U1PVR1_9STRA (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PVR1_9STRA)

HSP 1 Score: 228 bits (582), Expect = 9.210e-72
Identity = 103/153 (67.32%), Postives = 131/153 (85.62%), Query Frame = 1 
Query:  202 VTFGELDGTDVRVGIISTRWNEEIVNRLTDGVKESLKECNVTDSNIFETKVPGAFELPLAARFLSLSQTVDAVVCVGCLIKGDTMHFEYIAESTCKGLMDVSIQTSTPVVLGVLTCTEEEQAIKRSTGDNNHGVDWGKTAVEMGLLRMSATGV 660
            V+FGELDG+ VR+GII TRWNE+I++ L++GV++SL +C V + NIFET+VPG+FELPLAARFL++S  VDA++C+GCLIKGDTMHFEYIA++  KG+M+V I TS PVV GVLTC +E QA+KRSTG+NNHG+ WG TAVEM LLR SA G+
Sbjct:   43 VSFGELDGSKVRIGIIKTRWNEQIMDGLSEGVQKSLNDCGVEEKNIFETEVPGSFELPLAARFLAMSNRVDAIICLGCLIKGDTMHFEYIADAVAKGIMNVGISTSVPVVFGVLTCLDEAQAVKRSTGENNHGLSWGLTAVEMALLRRSAMGM 195
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BLAST of mRNA_Ecto-sp6_S_contig97.18692.1 vs. uniprot
Match: A0A1Z5JVA4_FISSO (6,7-dimethyl-8-ribityllumazine synthase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVA4_FISSO)

HSP 1 Score: 227 bits (579), Expect = 1.510e-71
Identity = 114/185 (61.62%), Postives = 142/185 (76.76%), Query Frame = 1 
Query:  178 TRMMAAEG-VTFGELDGTDVRVGIISTRWNEEIVNRLTDGVKESLKECNVTDSNIFETKVPGAFELPLAARFLSLSQTVDAVVCVGCLIKGDTMHFEYIAESTCKGLMDVSIQTSTPVVLGVLTCTEEEQAIKRSTGDNNHGVDWGKTAVEMGLLRMSATGVGKKASKSKHGAGGALGFGKSLDD 729
            T + AA+  V+F  LDG+ +R+GII TRWNEE VN L  G+K+ LKEC V+D+NIFET VPG+FELP+AARFL+L+ T DA++  G LIKGDTMHFE+IA++  KG+M++ +QTSTPVV GVLTC  E+Q   RSTGDNNHG DWGKTAVEM LLR  A G GKK  +SK     A+GFGK+ +D
Sbjct:   19 TALQAADSDVSFDNLDGSQMRIGIIKTRWNEEHVNNLVAGIKKGLKECKVSDTNIFETSVPGSFELPMAARFLALTGTCDAIITTGVLIKGDTMHFEFIADAVAKGIMNIGLQTSTPVVFGVLTCQNEQQVKDRSTGDNNHGYDWGKTAVEMALLRTEALG-GKKGEESKEMLA-AMGFGKADED 201
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BLAST of mRNA_Ecto-sp6_S_contig97.18692.1 vs. uniprot
Match: A0A835YTX6_9STRA (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTX6_9STRA)

HSP 1 Score: 225 bits (573), Expect = 1.990e-70
Identity = 118/201 (58.71%), Postives = 143/201 (71.14%), Query Frame = 1 
Query:  187 MAAEGVTFGELDGTDVRVGIISTRWNEEIVNRLTDGVKESLKECNVTDSNIFETKVPGAFELPLAARFLSLSQTVDAVVCVGCLIKGDTMHFEYIAESTCKGLMDVSIQTSTPVVLGVLTCTEEEQAIKRSTGDNNHGVDWGKTAVEMGLLRMSATGVGKKASKSKHGAGGALGFG-KSLDDKKDGKDGAIPGSMPKKIGF 786
            M+ EG+TF +LDG++VRVGII TRWN EIV  L  GVKE+L++C V   +IFET+VPGA+ELPLAARFL+LSQTVD++VC+GCLIKG+TMHFEYIA++   GLM V + T+ P V GVLT  +E QA  RS G+NNHGV WG TAVEMGLLRMSA G GK +      A G    G K  DD++            KKIGF
Sbjct:   39 MSKEGITFDDLDGSNVRVGIIRTRWNGEIVGNLRSGVKEALEKCGVKPEHIFETEVPGAYELPLAARFLALSQTVDSIVCLGCLIKGETMHFEYIADAVSSGLMQVGLSTTCPTVFGVLTTLDEAQAKSRSEGENNHGVGWGMTAVEMGLLRMSALGQGKASGMXXXXAEGLSIVGDKKADDER------------KKIGF 227
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18692.1 vs. uniprot
Match: A0A7S0KAM5_9STRA (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KAM5_9STRA)

HSP 1 Score: 223 bits (569), Expect = 6.190e-70
Identity = 115/205 (56.10%), Postives = 146/205 (71.22%), Query Frame = 1 
Query:  178 TRMMAAEGV--TFGELDGTDVRVGIISTRWNEEIVNRLTDGVKESLKECNVTDSNIFETKVPGAFELPLAARFLSLSQTVDAVVCVGCLIKGDTMHFEYIAESTCKGLMDVSIQTSTPVVLGVLTCTEEEQAIKRSTGDNNHGVDWGKTAVEMGLLRMSATGVGKKASKSKHGAGGALGFGKSLDDKKDGKDGAIPGSMPKKIGF 786
            T + AA+GV  TFGELDGTDVRVGII T+WN+  V+ + +G K++LKECNVT++NIFET+VPGA+ELP AA+ L+LS TVD ++C G LIKG TMHFEYI ++   G+M+V +QT+ PV+ GVLTC  EEQ ++RSTG+NNHG  WGKTAVEM LLR  A G+ K  SK      G +GF  SL    DG          +K+GF
Sbjct:   29 TALKAADGVEVTFGELDGTDVRVGIIKTKWNKVHVDNVVNGAKDALKECNVTEANIFETEVPGAYELPFAAKMLALSGTVDVIICAGVLIKGGTMHFEYICDAVSSGIMNVGLQTNVPVIFGVLTCLTEEQVVERSTGNNNHGDGWGKTAVEMALLRKEALGI-KTQSK------GPIGFDASLTTAGDGSK--------EKVGF 218
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18692.1 vs. uniprot
Match: A0A448Z8V0_9STRA (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z8V0_9STRA)

HSP 1 Score: 218 bits (554), Expect = 1.690e-67
Identity = 121/227 (53.30%), Postives = 150/227 (66.08%), Query Frame = 1 
Query:  106 ALRNAPAGGASTTSTYGSSRGAPATRMMAAEGVTFGELDGTDVRVGIISTRWNEEIVNRLTDGVKESLKECNVTDSNIFETKVPGAFELPLAARFLSLSQTVDAVVCVGCLIKGDTMHFEYIAESTCKGLMDVSIQTSTPVVLGVLTCTEEEQAIKRSTGDNNHGVDWGKTAVEMGLLRMSATGVGKKASKSKHGAGGALGFGKSLDDKKDGKDGAIPGSMPKKIGF 786
            AL N+P+   +   +  SS  AP+    A   V+FG+LDG+DVR+GII TRWN+E V  L DG KE+LKECNV + NIFET + GA+ELPL+ARFL+LS TVDA+V  G LIKG+TMHFEYI+++   GLM+V +QTS PVV GVL C  E+Q   RS+GDNNHG DWGKTAVEM LLR  A  +  KA          +GF      KK+  +GA   S  K  GF
Sbjct:   14 ALANSPSMTGAFAPSVRSSPFAPSLLKAAESEVSFGDLDGSDVRIGIIRTRWNDEHVTNLVDGCKEALKECNVKEENIFETSIAGAYELPLSARFLALSGTVDAIVTAGVLIKGETMHFEYISDAVSSGLMNVQLQTSCPVVYGVLNCMNEDQVKARSSGDNNHGYDWGKTAVEMALLRNEALNI--KAMGGSENKLADVGF-----SKKEASEGA---SEKKAXGF 230
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BLAST of mRNA_Ecto-sp6_S_contig97.18692.1 vs. uniprot
Match: A0A7S2CUY9_9STRA (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CUY9_9STRA)

HSP 1 Score: 216 bits (550), Expect = 5.450e-67
Identity = 109/190 (57.37%), Postives = 140/190 (73.68%), Query Frame = 1 
Query:  187 MAAEGVTFGELDGTDVRVGIISTRWNEEIVNRLTDGVKESLKECNVTDSNIFETKVPGAFELPLAARFLSLSQTVDAVVCVGCLIKGDTMHFEYIAESTCKGLMDVSIQTSTPVVLGVLTCTEEEQAIKRSTGDNNHGVDWGKTAVEMGLLRMSATGVGKKASKSKHGAGGALGFGK-SLDDKKDGKDGA 753
            M A  ++F ELDG+D R+GIISTRWN EI+N L    K++L +  V D NIFET+VPGAFELPLAARFL+LS TVDA+VC+GCLIKGDT HFEYI++S   G+M+V +QTSTP++ GVLT   E+QA+ R+TGD+NHG+ W +TAVEM LLR  A  +GKK +        ++GFG  S D +  GK G+
Sbjct:   40 MGAMDISFKELDGSDCRIGIISTRWNPEIINSLQVACKKTLDDVGVKDENIFETQVPGAFELPLAARFLALSGTVDAIVCIGCLIKGDTQHFEYISDSVSSGIMNVGLQTSTPIIFGVLTVNTEQQALDRATGDDNHGISWAQTAVEMALLRKDA--LGKKPA--------SMGFGSTSRDGESKGKVGS 219
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18692.1 vs. uniprot
Match: A0A7S4EE69_9STRA (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EE69_9STRA)

HSP 1 Score: 216 bits (550), Expect = 6.400e-67
Identity = 110/183 (60.11%), Postives = 137/183 (74.86%), Query Frame = 1 
Query:  202 VTFGELDGTDVRVGIISTRWNEEIVNRLTDGVKESLKECNVTDSNIFETKVPGAFELPLAARFLSLSQTVDAVVCVGCLIKGDTMHFEYIAESTCKGLMDVSIQTSTPVVLGVLTCTEEEQAIKRSTGDNNHGVDWGKTAVEMGLLRMSATGVGKKA-SKSKHGAGGALGFGK-SLDDKKDGK 744
            V+F +LDG+D+R+GII TRWN+E V  L DG K++LKECNV + NIFET +PGA+ELPL+ARFL+LS TVDA+V  G LIKG+TMHFEYI+++   GLM+V +QTS PVV GVL C  ++Q   RSTGDNNHG DWGKTAVEM LLR  A  V K + +KSK      +GF K S D +K+ K
Sbjct:   44 VSFDDLDGSDIRIGIIRTRWNDEHVTNLVDGCKKALKECNVKEENIFETSIPGAYELPLSARFLALSGTVDAIVTAGVLIKGETMHFEYISDAVSSGLMNVQLQTSCPVVYGVLNCLNDDQVKSRSTGDNNHGYDWGKTAVEMALLRNEALNVSKMSGAKSKL---ADVGFSKESTDGEKEKK 223
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18692.1 vs. uniprot
Match: A0A7S1BJ35_9STRA (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BJ35_9STRA)

HSP 1 Score: 216 bits (550), Expect = 8.790e-67
Identity = 120/223 (53.81%), Postives = 148/223 (66.37%), Query Frame = 1 
Query:  136 STTSTYGSSRGAPATRM----MAAEG-VTFGELDGTDVRVGIISTRWNEEIVNRLTDGVKESLKECNVTDSNIFETKVPGAFELPLAARFLSLSQTVDAVVCVGCLIKGDTMHFEYIAESTCKGLMDVSIQTSTPVVLGVLTCTEEEQAIKRSTGDNNHGVDWGKTAVEMGLLRMSATGVGKKASKSKHGAGGALGFGKSLDDKK-DGKDGAIPGSMPKKIGF 786
            S T+ YGS+   P+T+      A EG V FG LDG+D+R+GII TRWN+E V+ L DG KE+LKEC V D N+F  ++PG++ELPLAARFL+LS TVDAV+C+G LIKGDTMHFEYI  +   G+M+V +QTSTP + GVLT   ++Q + RSTGDNNHG  WGKTA+EM LLR  A G   K  K   G G  L  G   DD   D KD        + IGF
Sbjct:   25 SITTPYGST---PSTKYDITRNAVEGSVDFGTLDGSDLRIGIIKTRWNKEAVDSLLDGAKEALKECGVKDENVFVKEIPGSYELPLAARFLALSGTVDAVICMGVLIKGDTMHFEYICSAVSSGIMNVQLQTSTPCIFGVLTALNDQQVVDRSTGDNNHGYGWGKTAIEMALLRNEALG---KTGKKNRGFG--LEAGNDYDDSDADAKDPEKLRDPLRSIGF 239
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLC7_ECTSI4.360e-16794.666,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Ec... [more]
A0A7S2RMT1_9STRA5.160e-7563.086,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Rh... [more]
A0A6U1PVR1_9STRA9.210e-7267.326,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Fi... [more]
A0A1Z5JVA4_FISSO1.510e-7161.626,7-dimethyl-8-ribityllumazine synthase n=2 Tax=Fi... [more]
A0A835YTX6_9STRA1.990e-7058.716,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Tr... [more]
A0A7S0KAM5_9STRA6.190e-7056.106,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Le... [more]
A0A448Z8V0_9STRA1.690e-6753.306,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Ps... [more]
A0A7S2CUY9_9STRA5.450e-6757.376,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Di... [more]
A0A7S4EE69_9STRA6.400e-6760.116,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Ps... [more]
A0A7S1BJ35_9STRA8.790e-6753.816,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Co... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig97contigEcto-sp6_S_contig97:169673..177609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score471.9
Seed ortholog evalue2e-130
Seed eggNOG ortholog2880.D8LLC7
Preferred nameRIB4
Model size789
KEGG rclassRC00010,RC00163,RC00958,RC00960,RC02752
KEGG koko:K00793,ko:K00794,ko:K00820
KEGG ReactionR00066,R00768,R04457
KEGG Pathwayko00250,ko00520,ko00740,ko01100,ko01110,ko01130,ko04931,map00250,map00520,map00740,map01100,map01110,map01130,map04931
KEGG ModuleM00125
Hectar predicted targeting categorychloroplast
GOsGO:0000906,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016020,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019842,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0034641,GO:0036094,GO:0042364,GO:0042726,GO:0042727,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902444
Exons10
EggNOG free text desc.6,7-dimethyl-8-ribityllumazine synthase activity
EggNOG OGsCOG0054@1,KOG3243@2759
Ec32 ortholog description6,7-dimethyl-8-ribityllumazine synthase
Ec32 orthologEc-27_002140.1
EC2.5.1.78,2.5.1.9,2.6.1.16
Cds size789
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig97.18692.1prot_Ecto-sp6_S_contig97.18692.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig97 169673..177609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350596.4331381-CDS-Ecto-sp6_S_contig97:169672..1697761682350596.4331381-CDS-Ecto-sp6_S_contig97:169672..169776Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 169673..169776 +
1682350596.443145-CDS-Ecto-sp6_S_contig97:170897..1709751682350596.443145-CDS-Ecto-sp6_S_contig97:170897..170975Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 170898..170975 +
1682350596.450933-CDS-Ecto-sp6_S_contig97:172860..1729351682350596.450933-CDS-Ecto-sp6_S_contig97:172860..172935Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 172861..172935 +
1682350596.4589102-CDS-Ecto-sp6_S_contig97:173380..1734351682350596.4589102-CDS-Ecto-sp6_S_contig97:173380..173435Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 173381..173435 +
1682350596.4667995-CDS-Ecto-sp6_S_contig97:174247..1743211682350596.4667995-CDS-Ecto-sp6_S_contig97:174247..174321Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 174248..174321 +
1682350596.4744456-CDS-Ecto-sp6_S_contig97:175044..1751021682350596.4744456-CDS-Ecto-sp6_S_contig97:175044..175102Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 175045..175102 +
1682350596.4822214-CDS-Ecto-sp6_S_contig97:175543..1755801682350596.4822214-CDS-Ecto-sp6_S_contig97:175543..175580Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 175544..175580 +
1682350596.4898794-CDS-Ecto-sp6_S_contig97:176237..1763661682350596.4898794-CDS-Ecto-sp6_S_contig97:176237..176366Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 176238..176366 +
1682350596.501562-CDS-Ecto-sp6_S_contig97:177182..1772621682350596.501562-CDS-Ecto-sp6_S_contig97:177182..177262Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 177183..177262 +
1682350596.5114229-CDS-Ecto-sp6_S_contig97:177510..1776091682350596.5114229-CDS-Ecto-sp6_S_contig97:177510..177609Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 177511..177609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig97.18692.1

>prot_Ecto-sp6_S_contig97.18692.1 ID=prot_Ecto-sp6_S_contig97.18692.1|Name=mRNA_Ecto-sp6_S_contig97.18692.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=263bp
MRVFESALTLAGGLFACRTASAFVAPEASIRQEDWALRNAPAGGASTTST
YGSSRGAPATRMMAAEGVTFGELDGTDVRVGIISTRWNEEIVNRLTDGVK
ESLKECNVTDSNIFETKVPGAFELPLAARFLSLSQTVDAVVCVGCLIKGD
TMHFEYIAESTCKGLMDVSIQTSTPVVLGVLTCTEEEQAIKRSTGDNNHG
VDWGKTAVEMGLLRMSATGVGKKASKSKHGAGGALGFGKSLDDKKDGKDG
AIPGSMPKKIGF*
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mRNA from alignment at Ecto-sp6_S_contig97:169673..177609+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig97.18692.1 ID=mRNA_Ecto-sp6_S_contig97.18692.1|Name=mRNA_Ecto-sp6_S_contig97.18692.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7937bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:169673..177609+ (Ectocarpus species6 EcLAC_371)
ATGAGAGTCTTCGAGAGCGCACTTACGTTGGCAGGCGGTCTGTTTGCGTG
TCGGACGGCTTCGGCATTCGTGGCTCCTGAGGCATCTATCAGGCAAGAGG
ATTGGTCGCTTTTTTTTCTGGCTCAACCGCAGTATGCACAGCAGCAGCGG
CGTCGTGCTCTGCAGGCACAAGCAGAGTTCGCCGTTCATGAGCGCACTGC
TGTTGGCAACATAGCTCAAACAACCCTTCGGGGTCAGTTGAATTGTGTGC
AGTGAATGTGTGCAGTGCTCTGTCATCACGGTACATATATCTTGACGGTG
TACTGTGAATCTCTCCTCTTGGTTCCACACCTAGCTCATGTTTTCTTATC
CAATCAGAGTCCGCAGCAGAAAGAAATAGCAGGGCGGAGAGGGGAACGCT
GCTGCACGGCGGTTGTTGCTGCATGGAAACGTCTACAGGCAAACACGTTG
CGGTGCAGAAAATAGTCTACGCCCAGTTAAGATTATCTGATTCCGGTCAC
CTCGATGGTTGTGATGGATCGTTAGTTGTTGGCGCAAAGATGTCGACAAT
CGGCAACCCTTTACGATACCTTCCTCCCGAGTATTTTTGATACGGAACAC
GCGCGTGATGCACACGCGCATCTTTTAGTCTTTAGCTGAGAGAGGCTTCA
GCAGTCTCATCCAGGGCGCACGACACGGGGTTGGCATGCAGGACGATCCT
GCTCCGTCAGCACGATCGTGGCCATGAAAATGGCGCTGGAAATTTTTCCT
TGAAGGCCAGTTGTGGTTTTCCCGTGGTTTGCTTGAAGACACGTCCTTCC
ATGCACTCTTGTACGAGGCGTGTAGCAAGGTGGCACGTGTCCGGCTTGCG
CTCTGGTGTAGTCGTAAACCCCTCCATCCCCCCGCCCCCATAGCTCAGAT
ATTGTAACCGTGTGATGTACTTTGTCTTCGTTCTGGAACCGTCGGTCTAG
CGTGTCCACACATCAACTTTTGCCTGCATCCTTTGCGCGGTGTTCTCGAA
GCCGGTGCGTAGTCGTGTTGGAGCCCAAGAGCAACCCATCGCCTCTTGCG
GAGTCCATTTTTGTGTGCTCACTCTCTTGTTTCCTGACCTTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCCGCCGCCGCTCTGCTACCGCTTGCTCCCGC
TGGGCGATGTATCGACGATGCTGCTGATGATGATGATGATGATGGTGGTG
GTGATGATGACAATGATGGTGACAGGGCTCTGCGAAATGCACCAGCCGGC
GGCGCAAGCACCACTAGCACCTACGGCAGCAGCAGGGGGGCACCGGCCAC
CCGGTGAGAGTTCCCGAGCTCAAGAGACAGGAGGGACGGATGCACGTACA
TGCTACATACCACCACGTAGCAAGCGTGTTGTGCCTGAGGAGGAGGGTGT
CGCTGGTGTCAAGATCCACGAGCCCTTTGTGTGGCCCAGCTGGTTTTGAC
CCCCTCCCCGCGCTCTGCCCAATTACACCCTACCCGAAGAGTACTTCTAT
GAAGCTAAATGATACATGTACTTGGAGCACCCGCACGTTGGTGTAGGCCC
TATAATGCTAAAAGAGTGCCTGGTAGAAACATGCTTCGTCCATTTTGGAA
AGGCTACATGCGTGCATGGCAAGTCGTTAAGAAGACTGACGGCGTGTACC
AACGTTCTAGACCAAAAGACGAACCGGGAACAGGGATTTCCCTGTTTCCC
TGTTCCATGTCGGTTGTGCCCTAACCATACCACATGCCACAGCATTCAAG
CACAGAACGCGGAACACTTCAGCGCGCGCGTGCGTGGGGCCCGCAGGTAC
TCAGAGGCAGCAATTACAACCATTGGATGCAGAAAGACGAGTGGGGGGGG
GGTACAGGAAGGAGGAGTGGTGTAGGTTTTCGAAGGAGCTGTTGACGAGC
GCACACCAAACACATGTGCTATTTAACACGTATCGGCTAGAACGGGCAGT
GCTCGTCGTGCAATCCGCATCCTCGAGGGTGCTCTGGAAGGCTTTCTTTC
TGGGTTGTCGTCAGCGGCAGCTTGCCGTTCTCTTGGGATCTCTACCTTCC
CCCATACAACAGCTACACGAGCATGGCGTTTTTGTGCATGCGAGACGCCT
GATGATGATGGCAATGCTATACCGCTTGAACCGGTAGCATGCAGTACCTG
TGGCAGCCACATGCCCGAGAGCGATCGCACACATCCCACCACGTCCTGAA
TTGCCACCGAGGAGTACCGAAGAGCCCGTGTTCCACGTTCCCTATGGTCT
GTTGACTAATTTTAATGAGTGTGTTCATAAAAATTCTGGTGCGGCGCTAT
GTCCCCGAATCAGGGAACCTGGCTGGTCTCAACTGTTTCAAGAAAAATTG
TTTTGCTTGGCGGGCCAATCAGAAAATAAGTCCGAGTTCCCTGTTCCCTA
TTTTCTGGCTTGGTTGGTTAGTACACGCCCACGATGTGGAAGGATAACCC
CCCCCGACTCCCCGCCCCCCTCCCGGTGTTTGCCATCGGGGTTTGGGTTT
TCGTCGCTTGGCAACGACGTTGTAAAACAAGCCCCCCACTCGGTGTTTGC
CATCGGGATTGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCA
ATTCACTTCGTGAACTCGGCAACCAGGTTACCGGTTTTTTTTTCAACTCG
GTTTTTTTTTTGGCGGTAACCATAATGGTGGTCGAGTAGATCATGTTGTG
CGGGGTCGAGAACCCTCACTCCGCGCAACGGGGGATGATCGCACCACGTT
GTGTTAAAATGGTCAAGCTTCCTCGAGACAGTTACACAGCAGTGCTTACA
ACTGTCTCTGGAAATGAAAGCACCAGAAAATAAATTAAGTCATACGTAGC
TGTCATCCGTACGCAAGGAAGTAAGCACAAGATGCCGAACACCCTTAGCA
GGATGCAGCTCACCCTTCATGCGACTCGCCAAATACCTCACGGCGCTTCG
CGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCATGCTCCGTC
CCGGCTTTGTAGGGATGCGAGGTCAATGGTCAAACGACTACGGCATGCAC
GACTATGAGTACACCCCCGACTCCCCGCCCGTGTTCCCCCCCCTCCCGAT
TCTTCGTACCACCGCCGCATGTGCCTATTTGTAACTTCTGTATGAATACC
CACCTTGCTCGATTCCGTCTGTTCAACCTTTAACGCAGCATGATGGCGGC
GGAGGGTGTGACTTTTGGGGAGCTTGACGGCACCGACGTGCGCGTGGGGA
TCATCTCGACGAGGTGTGCGGGCTTGATCTACCGACAACCGCTCTTGTCT
CATTTTTTGCGTGCGCAATGGAAGTGCGTGTAGACGTACACACCCCCAAC
CAACAGATGGTGGTGGACAGTAGAGAGACAGTCAGCAAGCGGTGGGGTAG
ACAGACAGTCAGCAAAAGCGGTGGGGTAGACAGCGAGCATCACACTCCTC
TTCTCCGACTGCATGCGCCGTGCAGAATGTAAGCTTAAAGCAGGCTGACA
GCGTGCCATGGTGTACGGGAGTTGGCGAGGAGCTCTCGAGACCTCCGCAG
AAGGGTGAGGTGGCCCAGGCGGAGTTCCCTCCTTTCCGCGTGTTTCACCG
ACCTCACCCCGACCCTGTGCCCCCACCTGTTGTCTGATTCCTTTGGGCTG
TTGTTTGATGTTCCTGCCGTGTCTCCTACTACGTGTTTTTTGTGCTCGCG
GCGAAAAGGTGGAACGAGGAGATCGTGAACCGCTTAACCGACGGCGTGAA
GGAATCACTCAAGGTAGGTATTAGTACGATAGGACAAGAGGGAGCCACAG
AGAGATAAGGGAGAGAGAAGGTGGTGGTGGTGGAAGGGCGTGGGCGATTA
TTCTTAGGTTGGCCCGTGTTAATATCAGCAGTGGTAGTGGCAGCTCGGGC
GTATTCTTGAGTGTAGCCATGGCCAAGTTGTGCTCGTTGTGTTTAGGGTA
TGAGTCTTCCTGCAGCTCTACCTATGCCGGGGTGTAGGTTGGCGGGCTCT
ACAAGGCCCGGGTTGATTTTTGACGAGTGTGGGGTTGCAGCTAAGGCGTT
GAGACGGATGGACCGGGAGGGGTTGGTTTAACGTCGGCACTGGTTGATGC
CCAGCCGTGCCGCTTTCTATCCCAACGACCGTGGAGCGCCTGCTTGTTGT
TGCTTGAGTTGGCGGATGACGGTCGTCCGGGACCCCGTGCTTTGCGATGT
CCGCGTACTAGCTGTTACAGCTCATGTTTGTGTGTGTGTTTTTTTATTAC
TAGTATCGACCGCGCTAACCGGCTGACCAATGAAAAGACGCCAGTCGTAG
GGCGGTTGAAAATACAAAACACTTCTAAATGCCATTAACTGTGTGCGTGT
GTGTTTTTTTATTATTATTAGCATCGACCGCGCTAACCGGCTGACCAACG
AAAAGACGTCAGTGTGTGTATTGCCGTCTTCGGGTGCAACTCCGGTGTCG
TGTAACCGTTGCGAGTGTTGTTTGCCAGTGTAGGCTACGATGGTGGACTA
GTAGACACATCTCCCCCCTCCCACCCCCAACCCCTTGGCGCCCGATATTT
CGTGATACGGCGGTGCCCCCACCAGGAATGTAACGTTACGGACTCTAACA
TCTTCGAGACGAAGGTGCCTGGAGCCTTCGAGCTACCGCTGGCTGCACGG
TGAGCAAGCAGAGTTGCTCGCACGGACGGTACACAGTTGTTGGTGCTGTT
GTTACTGTTGATGCTGTTGCTGCTGCTGCTGCTGCCGCTCTTGTTGTTTT
TGCCATCACGCGAAGAAACCGACTGCCGTAAGAGCAGACAGATCACACAA
CCGTGACGGTGCGCGCTTGCTTTAAAAACGTGGCGTGCCCCGTACCTGCT
CCCCCCCCTCCTCCTTCGCGGGAGACTTGGCTGAAGTGTTGCCTTTGCTA
CTTTCTCGGCGCTGTCTTGTCCCCGAATGTTGCCTCTCGACGCTATTATG
TGATTGGTGCTGTCCAGGCAGGCACCGAAGGGTGTAAAATCAAGAATTTT
TGTTGAGTCTGTCTCGCGTCGAAAACGGCAGCAACCACATGGTCCTGTCC
TGCTTGGTGTTGCCCTGCGCTTGTTCGGTGTCTCTTGTCTTTTTGTCGCC
CAACCATGGCACGCACGGCTTGTTTCCTTGGTCCTCCCGCCCCACTCGCT
CCACCCGTACGTTATCTCGCGTCACGATCGTCCCTCTTGCTGCTTTGTGT
TATGCTAGATGAGCTGGTTCTGGATAGCCTTACTTCAATATTTCGTAAAT
GTAAATGTGACACGTTTTACCTTCCTTGGTAACGGTTGTTGTTTGCTTCC
CCTCTTTTATTCTTGTCTTGTTCTTCTTGTTGCCCGTCTTGGTTCGTTTT
TTTTTTTTCTTGCGCCGGGCAGATTTCTTTCCCTGTCCCAGACGGTGGAT
GCCGTTGTCTGCGTGGGGTGCCTGATCAAGGTAAGACTCGCCCTCGCCCC
GCCCGCCCCGCCCTTCTCTCGCGGACACGCGCTCAGCACACGCGCACACA
CGGATCATCAACGCTACGGTATCGTAGACCGATTCTGCGCACACTCCGCG
CGACACCAATATTTATCAAGGCTCCCTAGAAACGTGTGCAAGCTAGAGCA
TGTTTTACTGGCCTGGACCGCAAACAGCTCTGGACGTCAAATGTCAGCGT
TCGTTGGCGTGTGGATGCAGTAAGTTGTTTGTGTGAGATATTCCGACATC
GACATCGATCGATCCCAGCCCATCGCTTGATTGACCCTATGTGTATGGTG
CCTCTCCCGTGTCTTCGCGCCACCTGATTGCTTTTGCGACTCCTCAACGC
TCGCTGGATCCCGGTACACGCTGCGGAACATTACTCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTCAAGTAGGGTGACACCATGCACTTCGAGTACATCGC
TGAGTCGAGTGAGTCGTGGTGTCAGCTTCAAGCCTACGCTTTGGTAGGGT
ACGGTAGAAGCGAGAAACAGGGCGAATGGCGTCGGTGCGGCGTGTGGGTG
TGTGATGCTCTCTCTGCTGATGCGCATAACCGCGGAGCAGAACTCCAGGG
TCTCAACACAGCAGTTCTGGGGCTGACACATTGCGCAGTGTGTGCCCTGG
GATGGAGCAGACAATTCGTCGGCAGTGGTTAGTGCTCCTACGACAGTATG
ACAGACTACCGCCAAATTGTTCGTTCGGCATTCTTCTTTACCAGCCGTGA
CTTATGTTTACGCACCGGCAAAACCCCAGCGTCCGGTAGGCGTCTACGAG
TACTAGAACAAGCAGCAGCGGTGTCACGCCCATACTACCGACCCCCCCCC
CCCCACCCCCCCACCGCAGTCGAGGTACGCATGGCCTAGCCCCGCAACAT
CTCCGCAAACCCGATACGTGGCGGCGTAGTGACGTCACTGCTGCCAACCG
GGGCTCAAGATCCACCACAACCCACCGGACTATGCGTACTATAAATATAT
ATTCCTTTTTCGTTCTTTTTTTTTTTTTTTTGGTCCTCGCCTCCACCGCC
GCTGCCGTTTCACGCCCCGATGTGATGTCATGTGATGTCATGTGGTGTCG
TGTGGTGTGATGCAGCGTGCAAGGGACTGATGGACGTGTCGATCCAGACG
TCGACACCGGTAGTCCTGGGGGTGCTGACGTGCACGGAAGAGGAGCAGGC
GATCAAGCGCTCCACTGGGGACAACAACCACGGGGTTGACTGGGGTAAGA
CATGCCGTAGGGCACACAATATTTGGTGGTATTGTTGTTGTTGTTGTTGT
TTGTGTTTTTGATAATGGTGATGGTATTCTTGATGGTGTTGCTGCTGCTG
TTGGTGGTGATGGTCGTGGTGGTATTACTTGCTGGCTGTTTGTTGTTCGT
TGCCTTCGCTGTTTGCATTGTCGATCTAGCCGTTGCGGTAAGTCAGCCAA
CCCATTCTGTTCTTAGGATTATTCCTTCTCAAACCTCGCCGACGGGTAGA
TGTCAAGTAAATCCTGTAAGGGTGTCATAGGGCTTGACACAGTCCATCCA
TGCATTTTGTCGGTCTTGCTCAAACGGGAGGGGCGCAGGCGAGTAATTTA
TGCATTTGCTAGACAAATTTGAAAGGTTGCGTTCGGTACGGTACGGGTAC
GCTCGGTAGGGTATTGATACATTTCCGAAGCGTACCGAATTTCGGCAAGG
TAATAAAATATTACCGAAGCTTACCGAAATTTCGGTAGGGTATTGAAATC
TTACCGAAGCATACCGAGGCGCTCGGTGAGGTACATACCGCCGGTATTTA
CCGTCGGTATGCCTCGGTCGTACCTTACCGAGCACACCCTTGTTTATTAT
GGAAAAACGAAAATAATTTGTTTGCCGTTGCCGTCAATATTTACTAGTGA
TTTTTTTCGTTTTTTTTTGCCCACGCTCGCGAAGGAAAGCTTCAAAGCTT
AAACTTTGGTCTAGTCGTCCTCCGTTCGCCGTAAAACCCCCGTCCACCCT
CTCCGGGGAACAACGTGTGCTTGTGTATGTGCGTGTGAAATTTCTTGGAA
CGTTCGGCAGGCAAGACGGCGGTCGAGATGGGCCTTCTCCGCATGAGCGC
TACGGGCGTTGGCAAGAAGGCAAGCAAGAGCAAGCATGGCGTTGGGTTGT
TATTTGGAGCTTACAAGTCGCCCGTGCGATTTCAATCGGACTCCTCTGAC
TATGACGACCCACCCACTCGTTTGCTTTTTTCATCGCGCGCGATTTTTTC
TGTTTGCACAACAAAGGCTCACGTGGCCAAGTCTCTTAGCCCCCCCCCCG
TTTCTCCTCCCCATGCTTGGTGGCGTCACCCCCATTTCCTCCCCATCCTC
GGTGCTCCCCCCTATCCTCTGTTTCGTCGGTACTCCAGGCGGGCGGGGCT
TTGGGTTTCGGGAAGAGCTTAGACGACAAGAAGGACGGCAAGGACGGCGC
TATCCCCGGCAGCATGCCAAAGAAGATCGGCTTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:169673..177609+

>mRNA_Ecto-sp6_S_contig97.18692.1 ID=mRNA_Ecto-sp6_S_contig97.18692.1|Name=mRNA_Ecto-sp6_S_contig97.18692.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=789bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:169673..177609+ (Ectocarpus species6 EcLAC_371)
ATGAGAGTCTTCGAGAGCGCACTTACGTTGGCAGGCGGTCTGTTTGCGTG
TCGGACGGCTTCGGCATTCGTGGCTCCTGAGGCATCTATCAGGCAAGAGG
ATTGGGCTCTGCGAAATGCACCAGCCGGCGGCGCAAGCACCACTAGCACC
TACGGCAGCAGCAGGGGGGCACCGGCCACCCGCATGATGGCGGCGGAGGG
TGTGACTTTTGGGGAGCTTGACGGCACCGACGTGCGCGTGGGGATCATCT
CGACGAGGTGGAACGAGGAGATCGTGAACCGCTTAACCGACGGCGTGAAG
GAATCACTCAAGGAATGTAACGTTACGGACTCTAACATCTTCGAGACGAA
GGTGCCTGGAGCCTTCGAGCTACCGCTGGCTGCACGATTTCTTTCCCTGT
CCCAGACGGTGGATGCCGTTGTCTGCGTGGGGTGCCTGATCAAGGGTGAC
ACCATGCACTTCGAGTACATCGCTGAGTCGACGTGCAAGGGACTGATGGA
CGTGTCGATCCAGACGTCGACACCGGTAGTCCTGGGGGTGCTGACGTGCA
CGGAAGAGGAGCAGGCGATCAAGCGCTCCACTGGGGACAACAACCACGGG
GTTGACTGGGGCAAGACGGCGGTCGAGATGGGCCTTCTCCGCATGAGCGC
TACGGGCGTTGGCAAGAAGGCAAGCAAGAGCAAGCATGGCGCGGGCGGGG
CTTTGGGTTTCGGGAAGAGCTTAGACGACAAGAAGGACGGCAAGGACGGC
GCTATCCCCGGCAGCATGCCAAAGAAGATCGGCTTCTAG
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