mRNA_Ecto-sp6_S_contig97.18690.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig97.18690.1
Unique NamemRNA_Ecto-sp6_S_contig97.18690.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig97.18690.1 vs. uniprot
Match: D8LLC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLC9_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 2.650e-86
Identity = 189/196 (96.43%), Postives = 191/196 (97.45%), Query Frame = 1 
Query:    1 MNFIKKVTGAGGDAEAAPTPAPAPTDAXXXXXXXXXXXXXXXXXAAGIGMLAGVIQSVVGXXXXXXXXXXXXXXXXXXAPPAEAETPGIIGNLTSTITNAAHSVTDAATGIIGGGKKDGADAAAVDVTAVPAVETPEEGKEGGGIGGFLSNVTHTVTDGVKGAMGAVRDEIQADIKPSLKDDPAPADAVADAAPAK 588
            MNFIKKVTGAGGDAEAAPTPAPAPTDAXXXXXXXXXXXXXXXXXAAGIGMLAGVIQSVVGXXXXXXXXXXXXXXXXXXAPPAEAETPGIIGNLTSTITNAAHSVTDAATGI+GGGKK GADAAAV+V AVPAVETPEEGKEGGGI  FLSNVTHTVTDGVKGAMGAVRDEIQADIKPSLKDDPAPADA ADAAPAK
Sbjct:    1 MNFIKKVTGAGGDAEAAPTPAPAPTDAXXXXXXXXXXXXXXXXXAAGIGMLAGVIQSVVGXXXXXXXXXXXXXXXXXXAPPAEAETPGIIGNLTSTITNAAHSVTDAATGIVGGGKKGGADAAAVEVPAVPAVETPEEGKEGGGIXXFLSNVTHTVTDGVKGAMGAVRDEIQADIKPSLKDDPAPADAAADAAPAK 196
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BLAST of mRNA_Ecto-sp6_S_contig97.18690.1 vs. uniprot
Match: A0A6H5JTZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ4_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 1.050e-48
Identity = 124/150 (82.67%), Postives = 127/150 (84.67%), Query Frame = 1 
Query:  148 MLAGVIQSVVGXXXXXXXXXXXXXXXXXXAPPAEAETPGIIGNLTSTITNAAHSVTDAATGIIGGGKKDGADAAAVDVTAVPAVETPEEGKEG---GGIGGFLSNVTHTVTDGVKGAMGAVRDEIQADIKPSLKDDPAPADAVADAAPAK 588
            MLAG IQSVVGXXXXXXXXXXXXXXXXXX   AEAETPGIIGNLTSTITNAAHSVTD A GIIGGGKKDGADAAAV+VT+                GGIGGFL+NVTHTVTDGVKGAMGAVRDEIQADIKPSLKDDPAPADA ADAAPAK
Sbjct:    1 MLAGAIQSVVGXXXXXXXXXXXXXXXXXXXX-AEAETPGIIGNLTSTITNAAHSVTDTAAGIIGGGKKDGADAAAVEVTSXXXXXXXXXXXXXXXXGGIGGFLANVTHTVTDGVKGAMGAVRDEIQADIKPSLKDDPAPADAAADAAPAK 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLC9_ECTSI2.650e-8696.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTZ4_9PHAE1.050e-4882.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig97contigEcto-sp6_S_contig97:156435..159922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1360
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_002160.1
Cds size591
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350596.2382913-UTR-Ecto-sp6_S_contig97:156434..1572031682350596.2382913-UTR-Ecto-sp6_S_contig97:156434..157203Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig97 156435..157203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350596.248149-CDS-Ecto-sp6_S_contig97:157203..1573701682350596.248149-CDS-Ecto-sp6_S_contig97:157203..157370Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 157204..157370 -
1682350596.2615037-CDS-Ecto-sp6_S_contig97:157857..1582631682350596.2615037-CDS-Ecto-sp6_S_contig97:157857..158263Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 157858..158263 -
1682350596.2719557-CDS-Ecto-sp6_S_contig97:159904..1599221682350596.2719557-CDS-Ecto-sp6_S_contig97:159904..159922Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 159905..159922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig97.18690.1prot_Ecto-sp6_S_contig97.18690.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig97 157204..159922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig97.18690.1

>prot_Ecto-sp6_S_contig97.18690.1 ID=prot_Ecto-sp6_S_contig97.18690.1|Name=mRNA_Ecto-sp6_S_contig97.18690.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=197bp
MNFIKKVTGAGGDAEAAPTPAPAPTDAPTPSPAPAETPEQTPAPAAGIGM
LAGVIQSVVGGGSSSSSSGTAAGGEAPPAPPAEAETPGIIGNLTSTITNA
AHSVTDAATGIIGGGKKDGADAAAVDVTAVPAVETPEEGKEGGGIGGFLS
NVTHTVTDGVKGAMGAVRDEIQADIKPSLKDDPAPADAVADAAPAK*
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mRNA from alignment at Ecto-sp6_S_contig97:156435..159922-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig97.18690.1 ID=mRNA_Ecto-sp6_S_contig97.18690.1|Name=mRNA_Ecto-sp6_S_contig97.18690.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3488bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:156435..159922- (Ectocarpus species6 EcLAC_371)
ATGAACTTCATCAAAAAGGTGTGTGCGATGATGGATCAGGACGAGGTGCA
CAAGCAAGCAGTAGCGGTTGACAATTGCGGTCGAAGTGGCGAACAGACGA
ACCCATGAAACCTTGTTGTAGCGCGGTCCCCGACGTTCTCTATTGCCCTC
GCTCCCAAGGACTCTTGGCTTTCGTGCAAGTTCTGGGCGTCATCTTCCTT
GCCGTAGGGGCTACGTTATTTTGCTACAAGTAGTCGCTCATGTTCTCGGA
TCAATGCTCCCCCGTGCCTGCTGTTGTTGGTTTCGTTCGCGAGTTGAAGT
TGTCGATCGGAGTTCAGATATCCTTCGCGAATGACATCGGGCTGGCTGTG
GTAATATTTCGAAGATAAAAAAAAAAGAGTGGGGAACCGGGCCGGCTTTA
TCAGTTTTGTACTACTAAGCTCATGATAGCTCATTTCTCATTTCAAGTTC
GTTGTGGAGACCAAAACAGCACACCCAGGTACAAAGTGGCTTGCGAGTCG
GAATCTAACTCCCGCTCGCTGGGGTTCGCTCCTCCGCGTTTTCTGCCGGT
AGCTTTGCCGTATCAACATTGGTTTCATTTCGTGGACGCATATATAGCGT
ATAGCGTAAAAAAAATTGGCACCTGCCGCCTGCCGTCGACATAAACACGT
GAGTTTGGAGATAGTTTCGTTCTCTCCTCACATATGCAAGGGTGGGTTTC
GTCGCGTCAGAAGATTACATACAAGTAGTCTACATGTGGATTACATACAG
GGTTGTCGGCGGCTCCGCATCAATCTTGTTCTTCTCTTGGTTGCATGTTT
TGTTGTCGTCGCATGCTGCTGTGTTAGTCTCGTCATTTCTTGGTCCCCTG
TGCTCCCGCGGATGGAATTATGTACTGCTGTAAATAGTAAATAGCCTTCT
GTAAAATTATTCTTTTTGATCCACACATCAACGCGCAACGACCACCATTT
TTTTAAGCTCACATCGATGTAAACATACGCGATCTGTTCTTTCCTACAAG
CGTACATTCGTCGTTGTTTTCATTTTTGTGACGGCATGGTGCAAGTACAT
ACTTCTCTCCAGTACTTATAGCTGTATCCCCGGTGGGGCATGGTGCAAGT
ATACATGGGCACACATCTCTCCAGTACTTATAGCTGTATCCCCGGTGTGT
GTGTCTGTACATCACATTCCCTACGTAAAACAATCTGAACAGGTGGTCCT
TCCCTGCTGCTGTTATGATGTCATGCATTGTATCGAAGATAGATGGACAC
GTGGCGGCCTCTCTGTGGACATTCGTATCGTGTGCATTTGCGATTCTCTG
TATGCAACGTTTTGATTACGGCAAGAGAGGGACTGAAGCCACATGCGCCC
CCCCATCATGTCGAAGTGGATCACATAGGCATTTGCCCCTTGTGATATTA
AGTTCAACATCGTACTCGTGTAAAACATGTCACCATCGTTGCTCGAACAG
ACTCTTCCCTTCCGCATGGTTCTTTGCCTGAGTAACCGAGGAGCAACCCG
AGATCACACAACAGAGCTACAAGAACGGACGGTGCAGTTCCGTCGTTATT
TTTATACTTCCGCAAATTTCCGGCTGGATTTGTTCATAGTACTTCTTGTT
TGCCATGCTGCAAGTTCATCACCACTGCTGCTTCATGCTGTTGTCTCGAA
AACTCACAGGTTACCGGAGCCGGGGGCGACGCAGAGGCCGCCCCCACCCC
CGCCCCAGCCCCAACCGACGCCCCCACCCCGTCCCCGGCCCCCGCCGAAA
CCCCCGAACAAACACCTGCCCCCGCTGCCGGCATCGGCATGCTCGCCGGC
GTCATCCAGAGCGTTGTGGGCGGGGGCAGCAGCTCTTCGTCCAGCGGCAC
CGCCGCGGGGGGGGAGGCGCCGCCGGCGCCGCCGGCGGAGGCTGAAACTC
CTGGAATAATCGGCAACCTGACTTCCACGATCACCAACGCCGCACACAGC
GTGACTGACGCGGCCACCGGGATCATTGGCGGCGGCAAGAAGGACGGCGC
GGATGCTGCGGCGGTCGACGTGACGGCGGTGCCGGCGGTAGAGACACCAG
AGGAGGGGAAGGAAGGTAAAGTTGCAGAAATGAGGCGACGATGTCTCTCC
AAGTGTTTCTCCACCACCGGCGGGACCTATTACTTTTTGGGGGACATGTG
TTTTCCCACAAGACGTGTAGGTTGCTTGCGTTCAGAGAAAGGATTGGATC
CCCCCCGGGTGCAGTGATGGCCGCATCGGACTTCCTTCATACCCGATTAC
GTCACGACAGCAGAAATACGTGGACAAAACCCGCCTCCCGTGTTGTTGCC
GACTTTTTTTCCACGCTCTCTCGATTTCCTGCGGTTGCGTTCCCGATCAC
GACGACTTGCGGGGCCGCACACCGCACACCGCAATCCCAAGTCGACAAGT
CATCATGACTGCTTTGTGGGGAAAAAAGAGCATATCTACTGCTGCATGTC
GAAACGTCGAAACTATGAGCAGAGAACGGGCGTATTTTGATAGATGAGAC
TCACCCTCCCCCGGCTGTTGCGCTTTCCTTCGTGCCCGTACCTGCGCCAC
AGGGGGTGGGATCGGCGGCTTCCTCTCCAACGTGACGCACACCGTGACGG
ATGGCGTCAAGGGAGCGATGGGCGCCGTCAGGGACGAGATCCAGGCGGAC
ATCAAGCCCTCTCTCAAGGACGATCCTGCCCCAGCCGATGCCGTCGCTGA
CGCGGCGCCCGCGAAGTAGAGATGTCACCCGCTCGCCATTGTCATTACGT
AAGGTCTAATGTTTTATCTTGTACAGCAAGGCGGAAGATAGACGGCTGGT
GATACATGACGACTGTTTCGCGTGGATGGATCGATTCGGATAGGTTGTTG
TCGTGTACGTCGAGCAATGGGTCTATTTTGTTGAGTAACAGCAGTATCAA
AGGACTACAACTACAGTAGTATCAAGGGATTCGAAAGCACATTCCCCTTT
TCCGGGCTTGTGTAGTGATTGCCTCGAGGCGGAACTCGGACGAAGTTTCA
TGGTAATCCCTTTGCCAATCCCTTGGTGCTATTGTGGAAGAGCTCAGAAT
ATTTACCGTGAGACCGAATGGCGACGGTAGAAGGCCCTATTTTCGTTGTG
TCCTTGTACAGGTATATTCTCAGATAAACACAGGGCCACCGTCTGCCTAG
GTTCGTGAAGAAAGTAAAACAACATTGGGCCCCACCGGTAGTATTACCCG
CGCGGCTAGTCTGGCGTAGCACACTCCGAGGAAGTTCGATACTCAGCTAT
TAGGGCTTGCTGTACATATCGTCTTCACCGGGCGTGTGGATGATGGTTTC
TTCCATGTATTGATGCGGTTGTGTTCGCCGTTGAGTTATACCATAGTTTT
ACCAGCTCGCTCTTCTCCCATGTTGTTGTCGATACGGGTTGGGGTTTTCA
CATGTGGCGGTGGTTCGTGTCCCCCGTAATCATTTTCGGTGGCTCGGCGC
CTGGTTGTAATTTTCCAAGTAGAATCGTGTTTACCGTT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:156435..159922-

>mRNA_Ecto-sp6_S_contig97.18690.1 ID=mRNA_Ecto-sp6_S_contig97.18690.1|Name=mRNA_Ecto-sp6_S_contig97.18690.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:156435..159922- (Ectocarpus species6 EcLAC_371)
ATGAACTTCATCAAAAAGGTTACCGGAGCCGGGGGCGACGCAGAGGCCGC
CCCCACCCCCGCCCCAGCCCCAACCGACGCCCCCACCCCGTCCCCGGCCC
CCGCCGAAACCCCCGAACAAACACCTGCCCCCGCTGCCGGCATCGGCATG
CTCGCCGGCGTCATCCAGAGCGTTGTGGGCGGGGGCAGCAGCTCTTCGTC
CAGCGGCACCGCCGCGGGGGGGGAGGCGCCGCCGGCGCCGCCGGCGGAGG
CTGAAACTCCTGGAATAATCGGCAACCTGACTTCCACGATCACCAACGCC
GCACACAGCGTGACTGACGCGGCCACCGGGATCATTGGCGGCGGCAAGAA
GGACGGCGCGGATGCTGCGGCGGTCGACGTGACGGCGGTGCCGGCGGTAG
AGACACCAGAGGAGGGGAAGGAAGGGGGTGGGATCGGCGGCTTCCTCTCC
AACGTGACGCACACCGTGACGGATGGCGTCAAGGGAGCGATGGGCGCCGT
CAGGGACGAGATCCAGGCGGACATCAAGCCCTCTCTCAAGGACGATCCTG
CCCCAGCCGATGCCGTCGCTGACGCGGCGCCCGCGAAGTAG
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