mRNA_Ecto-sp6_S_contig97.18684.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig97.18684.1
Unique NamemRNA_Ecto-sp6_S_contig97.18684.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig97contigEcto-sp6_S_contig97:71612..73010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size459
Hectar predicted targeting categoryother localisation
Exons3
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350595.3474612-CDS-Ecto-sp6_S_contig97:71611..717391682350595.3474612-CDS-Ecto-sp6_S_contig97:71611..71739Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 71612..71739 +
1682350595.3587868-CDS-Ecto-sp6_S_contig97:72298..724821682350595.3587868-CDS-Ecto-sp6_S_contig97:72298..72482Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 72299..72482 +
1682350595.3673928-CDS-Ecto-sp6_S_contig97:72863..730101682350595.3673928-CDS-Ecto-sp6_S_contig97:72863..73010Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 72864..73010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig97.18684.1prot_Ecto-sp6_S_contig97.18684.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig97 71612..73010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig97.18684.1

>prot_Ecto-sp6_S_contig97.18684.1 ID=prot_Ecto-sp6_S_contig97.18684.1|Name=mRNA_Ecto-sp6_S_contig97.18684.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=153bp
MEHEATRSAPDPWVPSTLRSMPSLPSRGGVEIRTKARHQLIRRFLYSDLQ
PLTELGVAPDPYPEGPSSLPAEPPADIRKELAHERRREGLRKAAVSTRLP
RLTKAAASRDAFLRAAGHTTQGSQSLRICEENALAKSLRDGEVLSSVLEE
QRR
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mRNA from alignment at Ecto-sp6_S_contig97:71612..73010+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig97.18684.1 ID=mRNA_Ecto-sp6_S_contig97.18684.1|Name=mRNA_Ecto-sp6_S_contig97.18684.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1399bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:71612..73010+ (Ectocarpus species6 EcLAC_371)
ATGGAGCATGAAGCTACCCGATCGGCGCCTGACCCCTGGGTTCCGTCAAC
TTTACGATCGATGCCGTCCCTGCCATCAAGAGGAGGGGTGGAGATTCGAA
CGAAAGCTCGTCATCAGTTAATCAGAAGGTACTGTTGTACGTGCAATTCC
TGCTGTATGTTGCATGGAGAAGCTTGGTGACGTTTTTTTTGTCTTCCGAC
TGCTGCACTGCTGCAGAAGAACCGGAGCTATGCTACATGTTTGTACACTA
CAAAGGTATGTAGATATGCTACATATTTCACAGCGAACCCATCTTTATCT
GTAGAAAATAGTCTACTGTAGATTAGCAATGAATCCATAGCGTCAGCGAA
GACTACCTGTATTTCCACGATTTCCCGAGCAGCACACAACGATATCTCCC
AAGTGGGTAACAACGGTCAACATGACAAGTTGGTACTGCTGTAGCATCTT
GTGCAACTTGTATAGACTAGTCGTGCTGGGAAGGTGTAGAAGGAAGGTGT
TGGGTAGTTTGTTCGCCATGGGTCATCGGTTACAGCAACGCAGAGGGACG
AAATGGTCGGGGCATACGGAGCCTAATACCACCTCGTCCACCGGCAAGTG
CCTTATGCATAGTATCCTGAAGGGTCCTCTTGTACACGCTTTCTGCGCGG
TTTCATCGTCCTTCGCGCTCTTGTTCTTGTTCGCAAGGTTCCTTTACTCT
GACTTGCAGCCTTTAACGGAGCTTGGCGTAGCACCAGACCCTTACCCGGA
AGGACCAAGCTCACTCCCGGCTGAGCCTCCTGCTGACATTCGAAAGGAGC
TAGCGCATGAACGGCGACGAGAAGGGCTGAGGAAGGCCGCGGTTTCAACG
CGCCTTCCACGTTTGACCAAGGTATACGCATGAGATTACTCAAGTTCTGG
CCTGGCGCCAGGTTTGCCTCTAGGTTTAGGAAGTAGTATGTAAGCCTTCC
CAAGCAACTGAACCCGCGCGTGTTAGTACCGCTGTCACACACTCCAAGAT
GTCCTTCGGTCTATGATGCTGATTCACCTGTGTTGCTAGTATTACCATAG
CCAAACCCAGTTTACGGAATCTGGAACTATATTTCTTAGCACACAAGGCG
TTGCCTACTGCTTTCGAGAACATATCTCTTGTACTGTCGATAATGATAGA
GGCTAGAAAAAGGCGTGCCATAACAAACGTTGCACATATTGAGATTGTCA
TGCTCGTGGTTGCGAATCGTGTGCGACCCTCTCTAAAATAATGCCACCCC
AGGCAGCCGCTTCACGGGACGCGTTCCTCAGGGCAGCTGGACACACTACC
CAGGGGTCGCAGTCCCTCCGCATATGCGAGGAAAACGCCTTGGCGAAGTC
CTTGCGGGATGGCGAAGTCCTCTCCTCCGTTTTAGAAGAGCAACGGCGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:71612..73010+

>mRNA_Ecto-sp6_S_contig97.18684.1 ID=mRNA_Ecto-sp6_S_contig97.18684.1|Name=mRNA_Ecto-sp6_S_contig97.18684.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:71612..73010+ (Ectocarpus species6 EcLAC_371)
ATGGAGCATGAAGCTACCCGATCGGCGCCTGACCCCTGGGTTCCGTCAAC
TTTACGATCGATGCCGTCCCTGCCATCAAGAGGAGGGGTGGAGATTCGAA
CGAAAGCTCGTCATCAGTTAATCAGAAGGTTCCTTTACTCTGACTTGCAG
CCTTTAACGGAGCTTGGCGTAGCACCAGACCCTTACCCGGAAGGACCAAG
CTCACTCCCGGCTGAGCCTCCTGCTGACATTCGAAAGGAGCTAGCGCATG
AACGGCGACGAGAAGGGCTGAGGAAGGCCGCGGTTTCAACGCGCCTTCCA
CGTTTGACCAAGGCAGCCGCTTCACGGGACGCGTTCCTCAGGGCAGCTGG
ACACACTACCCAGGGGTCGCAGTCCCTCCGCATATGCGAGGAAAACGCCT
TGGCGAAGTCCTTGCGGGATGGCGAAGTCCTCTCCTCCGTTTTAGAAGAG
CAACGGCGA
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