mRNA_Ecto-sp6_S_contig97.18683.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig97.18683.1
Unique NamemRNA_Ecto-sp6_S_contig97.18683.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig97.18683.1 vs. uniprot
Match: D8LLD7_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD7_ECTSI)

HSP 1 Score: 381 bits (978), Expect = 5.920e-128
Identity = 199/219 (90.87%), Postives = 202/219 (92.24%), Query Frame = 1 
Query:    1 MNVSPDMRLSWLQRWQSMDEDGSNLLDYTEFLQACELRDNMWSWRMFNLLDKNFVEVAFRMCSRRGSTWDPDKSVLDEKDIRLFVEERVLHSLYKEGASTINREGFGLLKEGLTSARARWARSMSPAELSSPVKIASKRETKHLAESARDISQSGGAIRQLSARKMADTRDWLKVESEMLTEAAKGAARDLAKFGRLKANVTVAVAVNRMRALAEAARQ 657
            MNVSPDMRLSWLQRWQSMDEDGSNLLDY EFLQACELRDNMWSWRMFNLLDKNFVEVAFRMCSRRGSTWDPDKSVLDEKDIRLFVEER+LH LY EG           LK+G TSARARWARSMSPAELSSPVKIASKRETKHLAESARDISQSGGAIR+LSARKMADTRDWLKVESEMLTEAAKGAARDL KFGRLKA VTVAVAVNRMRALAEAARQ
Sbjct:    1 MNVSPDMRLSWLQRWQSMDEDGSNLLDYPEFLQACELRDNMWSWRMFNLLDKNFVEVAFRMCSRRGSTWDPDKSVLDEKDIRLFVEERILHHLYNEG-----------LKDGPTSARARWARSMSPAELSSPVKIASKRETKHLAESARDISQSGGAIRELSARKMADTRDWLKVESEMLTEAAKGAARDLEKFGRLKATVTVAVAVNRMRALAEAARQ 208
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BLAST of mRNA_Ecto-sp6_S_contig97.18683.1 vs. uniprot
Match: A0A6H5JXQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ3_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 1.790e-68
Identity = 150/291 (51.55%), Postives = 159/291 (54.64%), Query Frame = 1 
Query:    1 MNVSPDMRLSWLQRWQSMDEDGSNLLDYTEFLQACELRDNMWSWRMFNLLDKNFVEVAFRMCSRRGSTWDPDKSVL-------------------------------DEKDIRLFVEERVLHSLYKEGAS---TINREGFGLLK---------------------------------------------------EGLTSARARWARSMSPAELSSPVKIASKRETKHLAESARDISQSGGAIRQLSARKMADTRDWLKVESEMLTEAAKGAARDLAKFGRLKANVTVAVA 618
            M VS DMRLSWLQRWQSMDEDGSNLLDYTEFLQAC LRDN+WSWRMFNLLDKNFV V       RG     ++ V                                  K IR    E  +      G +   T+ + G  ++K                                                   E LT ARARWARSMSPAELSS VK ASKR TKHLAESARDISQSGGAIRQLSARKMADTR WLKVESEMLTEAAKGAARDL KFGRLKA  TVAVA
Sbjct:    1 MKVSSDMRLSWLQRWQSMDEDGSNLLDYTEFLQACGLRDNIWSWRMFNLLDKNFVGVMEAYLGARGFVTAVNRRVAAAAQRQFQTMALAAASKKMQVLNGMSSIGNTTAKKIRRVASESSIGRHLNSGGNERPTVAKPGDVVMKRLKLWTTATSAVDSERPLTTRVERVRATLRRVVSDSDLGNIGKSERSAKFGESLTGARARWARSMSPAELSSSVKTASKRATKHLAESARDISQSGGAIRQLSARKMADTRGWLKVESEMLTEAAKGAARDLEKFGRLKAIATVAVA 291
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLD7_ECTSI5.920e-12890.87EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JXQ3_9PHAE1.790e-6851.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig97contigEcto-sp6_S_contig97:65933..69269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size693
Hectar predicted targeting categoryother localisation
Exons4
Cds size693
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350595.2805471-CDS-Ecto-sp6_S_contig97:65932..663011682350595.2805471-CDS-Ecto-sp6_S_contig97:65932..66301Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 65933..66301 -
1682350595.2946367-CDS-Ecto-sp6_S_contig97:68078..681391682350595.2946367-CDS-Ecto-sp6_S_contig97:68078..68139Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 68079..68139 -
1682350595.3042533-CDS-Ecto-sp6_S_contig97:68564..686611682350595.3042533-CDS-Ecto-sp6_S_contig97:68564..68661Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 68565..68661 -
1682350595.314437-CDS-Ecto-sp6_S_contig97:69103..692691682350595.314437-CDS-Ecto-sp6_S_contig97:69103..69269Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 69104..69269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig97.18683.1prot_Ecto-sp6_S_contig97.18683.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig97 65933..69269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig97.18683.1

>prot_Ecto-sp6_S_contig97.18683.1 ID=prot_Ecto-sp6_S_contig97.18683.1|Name=mRNA_Ecto-sp6_S_contig97.18683.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=231bp
MNVSPDMRLSWLQRWQSMDEDGSNLLDYTEFLQACELRDNMWSWRMFNLL
DKNFVEVAFRMCSRRGSTWDPDKSVLDEKDIRLFVEERVLHSLYKEGAST
INREGFGLLKEGLTSARARWARSMSPAELSSPVKIASKRETKHLAESARD
ISQSGGAIRQLSARKMADTRDWLKVESEMLTEAAKGAARDLAKFGRLKAN
VTVAVAVNRMRALAEAARQARQAKRKYESK*
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mRNA from alignment at Ecto-sp6_S_contig97:65933..69269-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig97.18683.1 ID=mRNA_Ecto-sp6_S_contig97.18683.1|Name=mRNA_Ecto-sp6_S_contig97.18683.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3337bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:65933..69269- (Ectocarpus species6 EcLAC_371)
ATGAACGTATCTCCGGACATGCGTCTGTCCTGGCTTCAACGATGGCAGTC
CATGGATGAAGATGGCTCCAACCTTCTAGACTACACCGAGTTTCTGCAGG
CGTGCGAGCTCCGCGATAACATGTGGAGCTGGCGGATGTTCAACCTCCTC
GACAAGAATTTTGTAGGTGCGTCCTCTTTTGTGTTGCCCGACGATAACAG
CAGGCAGCGGCTCGGTATCCTGTACCTGGTACTTTGTAAAACTGCAGTGG
TGCTACTGCGAGTTCTAGTTAACGTAAACGAAAGTTCTCAAGGGGTTTAA
GCCGCGCGATGAATGCAAGAATAATAGTTCGCCGAATTCATATTTCAAGT
TCCTCCGACAAGTGGCCGAGCGTCGCTCGTCTCTATTGCAGAGTGCGTAA
TACCCGATGTACGACATCACGAGTGACTATCGGCTATTGAGAGTATACAT
CTACAGCACGGTATCGTACCAGATGACAGACGTGCTACCACGGAGTTTTG
AAAGTTCCGCCTCTGCCTCTACTTTTTTTTTCTCAGGGTGTGTTGATTTC
TTCACCTTCTTTAGCTCGCTACCACGATTTCTGGTGTTCGACCGTGCCAA
TGCGGTAGAAGTGGCATTCCGGATGTGCAGCCGCAGGGGATCCACCTGGG
ACCCGGATAAGTCGGTCTTAGACGAGAAAGACATCCGACTGTTCGTCGAA
GAGCGGTGAGAATAAAACAAGATCACACAGAATGTTCCCCTATCGTTTGG
AATGCAACAGCTAATATTAAATAGCATACATCGCCTGCGTTCTCGTGAGG
CCCTATTTTTGGCTTGACGACGGCTTCCGTATTGCCGGCGAGGTAAGCTC
GCTCTACCAACTAACCGGTGCGACACCTTTCTGTGCATGAAAATCGAAAT
CCTGCAGGTACCCGACGCTGGATCGAAAGCATACCCTGCACCGTGCGCTG
GAGATCTTGGCGCATCTGGATAATGATTGTTCTGGTGGTGTAAGTTTCGA
CGAATTCGAGCACTTCTGCAAGACGTGAGAAGTGAAGCCAGTCTGCCGTT
CTTTGCCACCCAGAGTCGTATCCGTACATAGGACCCATAGGATCCGCGAT
TCCTCGTCTCTTTTTCGTCAAATCCGGCAGGGTACTTCACAGTCTCTACA
AAGAAGGCGCAAGTACGATCAATCGTGAAGGCTTTGGGCTCGTCGGTCAA
GAACGGAGACGAACGCTACCAGATGATCTCGTCAACAATCCTCGCACTCA
GACCTAAAACAGATTGTTGGCTTTTTCGGCAGCGGCGCTTGAAAAGGGTA
GCCGTGCGATTGACTGGACAGTGATTGTAGGTGTCCTGAGGGATTGATTG
TCTGTGCCACTCTACACCCCCTTGCTTGCAGGAACCCTGTTTTCCTAACG
GCAGTGCAGGAGACACTTCAGTCCATGCGACATACTTTTTTCGGCGAACG
TTATTGGCAAGAATTCACCAAAGCGGCGAGGACGTTCGACAAATCAGCGC
AGCGTGAGATATTCTGCTCATCGCAGGTGTGATGGAAGCTCTTCTGGATA
TGTGTGACTTCGTTGCTGCGAACAAGGGACGATGTGGTGCAGCTTCCAAC
GAACTTTCTCATTGCACGAACAAAAAATATATATTGTTCCTGGCTCACAG
TAGTCGCTCCCACAACTCCCTGTCACGATACGCTATCACGCGCCCTTACT
CGGCGAAACTTCGAATAGCATCGCCCCCCCTTCCACCGCACCGCTTGATA
GTCCAACGGGCCAGCGTGCCAGACAGGTCGGACATAAGTTGCCCCCTCTT
GCGAAACCTAGCCCCGGCATGTCCAAATGTGATACGCACGGAAATTGCAT
GAGGCACAAGACGATCGTTGTCGTCGTCCGCCGATCAATCTGTTGATTCG
CTCCCCACTCGTCTGGAGTATCAGACAGGCATAGATGGCGGGGACACAGG
CGCAGGAGGGTTGGTCACGGCGGTCAACCGACGGGTTGCTGCAGCCGCGC
AGCGTCAATTCCAAACGATGGTCTTGGCTGCTGCAGCCAGCAGAAAGAGG
CAAATGTTGCACGGCATGAGCTCAATGGGAAACACTACAGAAAAAAAAAA
ACAGAGGATCGCATCCGAATCTATTATCGGGCGTCATCTGAAATCAGGGG
TGAGTCAACAAGGTTTGGACAAGAAGGTGGAGTGCGACACACGTACAGCT
TAGAGGTGTTTGGATTCGACAAGAATTGACTTCTAGAAGTAAATTGGGTT
GGCGTGAACTGGTTCGTCTGTCGGCGCCGCTCAGTGCGCACTGCCGGTGT
CGGCATCATTGTGTGCTTTTAGCCCCTGTTCGAATAAAAGATCGTGTAAA
CCTCCTGGAGTGCGCGTACTGGCTACATCAGTCGCCACCGTCATCAGAAC
GGGTCACTGTTGCCTGCCATTGCTTATCTGAGATCGACGTTGGAATTTCT
TGTTGGCTACTTTTTACGCACGTAACTGCACAGGGCAACGAACGACCAGC
AGTTGCTAAACCTGGAGACGTCATCATGAAGCGACTGAAGTTGTGGACAG
CAGCAACAAGTGCCGTAGACAACGACCGACCCTTAACGACACGCGGGGAA
AAAGCGAGAGCGACGCTTCGAAGAGTCGTATCTGACTCTGATTTGGGAAA
TATCGGAAAGTCTGAGAGATCAGCAAAGGTTCGTATGCAGATAGTGGATA
CCTTCCTGTGGTGCTCACGATTTCCTTACGCCTGACATATATATCAAGTA
AAAGGCTATTCCAGTCAACCGTAGGCAGAGTATGAAGCAGCTGTTGCGTT
TCGCTGCGTTGTATTTCTTGGCCTCAGCGTTTTCTGAACGCTTTTGGGCG
CTCTGCCAGCACCGATGTACATAATACCGCACCGTTCAAACTCAGTTAAC
GCGCCAATACCGCTTGTTGACCCTCGTTCTCTTGATGGTGATGCCTATCT
TTTCACGGTCTCCAACAGTTAAAGGAGGGCCTTACAAGCGCCCGGGCTCG
CTGGGCACGATCAATGAGCCCAGCGGAGCTCTCCTCTCCCGTGAAAATCG
CCAGCAAGCGCGAGACTAAACACCTTGCGGAGAGTGCGCGCGACATCTCC
CAAAGCGGAGGCGCTATTCGGCAGCTGTCGGCCCGAAAGATGGCGGACAC
GCGGGACTGGCTCAAAGTTGAGTCTGAAATGCTGACCGAAGCAGCCAAGG
GTGCGGCCAGGGACTTGGCGAAGTTCGGGAGGCTCAAAGCAAATGTTACC
GTCGCTGTTGCGGTCAATCGGATGCGGGCCCTGGCTGAAGCGGCGAGACA
GGCGAGACAGGCGAAGCGCAAATATGAGTCGAAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:65933..69269-

>mRNA_Ecto-sp6_S_contig97.18683.1 ID=mRNA_Ecto-sp6_S_contig97.18683.1|Name=mRNA_Ecto-sp6_S_contig97.18683.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=693bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:65933..69269- (Ectocarpus species6 EcLAC_371)
ATGAACGTATCTCCGGACATGCGTCTGTCCTGGCTTCAACGATGGCAGTC
CATGGATGAAGATGGCTCCAACCTTCTAGACTACACCGAGTTTCTGCAGG
CGTGCGAGCTCCGCGATAACATGTGGAGCTGGCGGATGTTCAACCTCCTC
GACAAGAATTTTGTAGAAGTGGCATTCCGGATGTGCAGCCGCAGGGGATC
CACCTGGGACCCGGATAAGTCGGTCTTAGACGAGAAAGACATCCGACTGT
TCGTCGAAGAGCGGGTACTTCACAGTCTCTACAAAGAAGGCGCAAGTACG
ATCAATCGTGAAGGCTTTGGGCTCTTAAAGGAGGGCCTTACAAGCGCCCG
GGCTCGCTGGGCACGATCAATGAGCCCAGCGGAGCTCTCCTCTCCCGTGA
AAATCGCCAGCAAGCGCGAGACTAAACACCTTGCGGAGAGTGCGCGCGAC
ATCTCCCAAAGCGGAGGCGCTATTCGGCAGCTGTCGGCCCGAAAGATGGC
GGACACGCGGGACTGGCTCAAAGTTGAGTCTGAAATGCTGACCGAAGCAG
CCAAGGGTGCGGCCAGGGACTTGGCGAAGTTCGGGAGGCTCAAAGCAAAT
GTTACCGTCGCTGTTGCGGTCAATCGGATGCGGGCCCTGGCTGAAGCGGC
GAGACAGGCGAGACAGGCGAAGCGCAAATATGAGTCGAAGTAG
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