mRNA_Ecto-sp6_S_contig96.18677.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18677.1
Unique NamemRNA_Ecto-sp6_S_contig96.18677.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:639951..641132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1182
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_010310.2
Cds size708
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350586.4915767-UTR-Ecto-sp6_S_contig96:639950..6403951682350586.4915767-UTR-Ecto-sp6_S_contig96:639950..640395Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 639951..640395 +
1682350586.5132196-UTR-Ecto-sp6_S_contig96:641103..6411321682350586.5132196-UTR-Ecto-sp6_S_contig96:641103..641132Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 641104..641132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350586.5041564-CDS-Ecto-sp6_S_contig96:640395..6411031682350586.5041564-CDS-Ecto-sp6_S_contig96:640395..641103Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 640396..641103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18677.1prot_Ecto-sp6_S_contig96.18677.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 640396..641103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18677.1

>prot_Ecto-sp6_S_contig96.18677.1 ID=prot_Ecto-sp6_S_contig96.18677.1|Name=mRNA_Ecto-sp6_S_contig96.18677.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=236bp
MFFFAASVGTVFSFPGSVHLPWKLRPRPRKDGTRSGHWIEGKLAVFNMKA
AACSEGEMSCKMSRGRFVGGGWRRRGSRQGGDSFCSAERCDKKEASFELK
SPKRIFAEVSSPVPARERGFDSERLVRLFGSFLVLLWVLLTPSSVGVCLC
CGCWNSACAPFAGAWARWAGEPQRNALLSRGESSAHLVDVTCVAPFSDFV
HGKYLLLLLKYNNKKNRSRRGSLFGTVFLRPCRSL*
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mRNA from alignment at Ecto-sp6_S_contig96:639951..641132+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18677.1 ID=mRNA_Ecto-sp6_S_contig96.18677.1|Name=mRNA_Ecto-sp6_S_contig96.18677.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1182bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:639951..641132+ (Ectocarpus species6 EcLAC_371)
TCCGTTCCTCTCGAACTCAGAATGACGTTTGTTTTTTCAAGAATTCGCGT
CCGAGTTTGTCGGGAAGGCGCTGCAGGTGAACGACGCAATTCGCCATGCA
GTTGGTCCCTTAGCTGGTGCACTACGCGTTGTGTGTGAAGATCTCTCGCT
GGCCGTGGAGGGTGTATTGCAGTGGCCGTGGCGGGTGCTGCTGTTCTCTT
AGGTCTGGCGTTACCTCCGGAGGTGGCCTGCGTCTGGCGAGCGGGGCTGC
AAAAAATTGTACATATAGCAGCTTGTCGGGTACTTGTTTCATTTGTCGTG
GCTCTTCCCTCCCCTTGTGGTATATTTTTGTTTGTTGCCTGAGCGGTCCG
GTCCGAGTCGGAGTCGCGGGCTGTGTTTTTCCGGCTTTTCGGGTGCCCTT
AAGCTTTGGTTCCGTCCGTCTGTGTAGAATTATTCACGCGAGGAAATGTT
CTTCTTCGCCGCGAGTGTCGGGACGGTTTTTTCTTTTCCAGGTTCTGTTC
ATTTGCCTTGGAAATTACGTCCTCGTCCTCGGAAAGACGGAACAAGAAGT
GGGCACTGGATAGAGGGTAAATTAGCGGTTTTTAACATGAAGGCCGCGGC
TTGCTCAGAAGGGGAGATGAGTTGTAAAATGTCGCGTGGTAGGTTTGTCG
GAGGGGGGTGGAGGCGGAGAGGCAGCCGCCAAGGGGGGGATAGCTTCTGC
AGTGCCGAGCGTTGTGATAAGAAAGAGGCGTCTTTTGAGCTGAAGAGCCC
CAAAAGAATATTCGCAGAAGTTTCGTCGCCGGTCCCTGCGAGGGAGAGAG
GCTTCGATAGCGAGAGGCTCGTTCGTTTGTTTGGCTCTTTTCTTGTCCTT
CTATGGGTTTTGTTGACTCCTTCCTCGGTTGGCGTCTGTCTGTGTTGCGG
GTGTTGGAACTCCGCCTGTGCTCCCTTTGCTGGTGCCTGGGCGCGGTGGG
CTGGGGAGCCACAAAGAAACGCGCTGCTGTCGAGAGGCGAATCAAGCGCC
CACCTTGTTGATGTTACGTGTGTCGCGCCCTTTTCTGATTTTGTGCATGG
GAAGTATCTACTACTATTACTAAAATATAATAATAAAAAAAATCGTTCAC
GTAGAGGTTCTTTGTTTGGTACCGTCTTTCTTAGACCGTGTCGCTCTCTC
TGATTGTAGCCCCGAGGGTCTTGGGGCGACAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:639951..641132+

>mRNA_Ecto-sp6_S_contig96.18677.1 ID=mRNA_Ecto-sp6_S_contig96.18677.1|Name=mRNA_Ecto-sp6_S_contig96.18677.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:639951..641132+ (Ectocarpus species6 EcLAC_371)
ATGTTCTTCTTCGCCGCGAGTGTCGGGACGGTTTTTTCTTTTCCAGGTTC
TGTTCATTTGCCTTGGAAATTACGTCCTCGTCCTCGGAAAGACGGAACAA
GAAGTGGGCACTGGATAGAGGGTAAATTAGCGGTTTTTAACATGAAGGCC
GCGGCTTGCTCAGAAGGGGAGATGAGTTGTAAAATGTCGCGTGGTAGGTT
TGTCGGAGGGGGGTGGAGGCGGAGAGGCAGCCGCCAAGGGGGGGATAGCT
TCTGCAGTGCCGAGCGTTGTGATAAGAAAGAGGCGTCTTTTGAGCTGAAG
AGCCCCAAAAGAATATTCGCAGAAGTTTCGTCGCCGGTCCCTGCGAGGGA
GAGAGGCTTCGATAGCGAGAGGCTCGTTCGTTTGTTTGGCTCTTTTCTTG
TCCTTCTATGGGTTTTGTTGACTCCTTCCTCGGTTGGCGTCTGTCTGTGT
TGCGGGTGTTGGAACTCCGCCTGTGCTCCCTTTGCTGGTGCCTGGGCGCG
GTGGGCTGGGGAGCCACAAAGAAACGCGCTGCTGTCGAGAGGCGAATCAA
GCGCCCACCTTGTTGATGTTACGTGTGTCGCGCCCTTTTCTGATTTTGTG
CATGGGAAGTATCTACTACTATTACTAAAATATAATAATAAAAAAAATCG
TTCACGTAGAGGTTCTTTGTTTGGTACCGTCTTTCTTAGACCGTGTCGCT
CTCTCTGA
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