mRNA_Ecto-sp6_S_contig96.18676.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18676.1
Unique NamemRNA_Ecto-sp6_S_contig96.18676.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig96.18676.1 vs. uniprot
Match: D7FJS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS8_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 2.480e-104
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 1 
Query:    1 MGLSPLSEGRPSSLGVGVRGGGRGRDTSVPRLFELSDELGLGHGASGMRWSQLSIFDDQDLLPQCCFLLVTPGKPSFLWIGEAFAAGLVQVVSSLEELQELARDIAVKDARRLSDRTLPLPSDVETAVIVPGDGNEPPEWWSAFESGYT 447
            MGLSPLSEGRPSSLGVGVRGGGRGRD SVPRLFELSDELGLGHGASGMRWSQLSIFDDQDLLPQCCFLLVTPGKPSFLWIGEAFAAGLVQVVSSLEELQELARDIAVKDARRLSDRTLPLPSDVETAVIVPGDGNEPPEWWSAFESGYT
Sbjct:    1 MGLSPLSEGRPSSLGVGVRGGGRGRDASVPRLFELSDELGLGHGASGMRWSQLSIFDDQDLLPQCCFLLVTPGKPSFLWIGEAFAAGLVQVVSSLEELQELARDIAVKDARRLSDRTLPLPSDVETAVIVPGDGNEPPEWWSAFESGYT 149
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BLAST of mRNA_Ecto-sp6_S_contig96.18676.1 vs. uniprot
Match: A0A6H5L2L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L8_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 9.240e-93
Identity = 145/149 (97.32%), Postives = 146/149 (97.99%), Query Frame = 1 
Query:    1 MGLSPLSEGRPSSLGVGVRGGGRGRDTSVPRLFELSDELGLGHGASGMRWSQLSIFDDQDLLPQCCFLLVTPGKPSFLWIGEAFAAGLVQVVSSLEELQELARDIAVKDARRLSDRTLPLPSDVETAVIVPGDGNEPPEWWSAFESGYT 447
            MGLSPL EGRPSSLGVGVRGG RGRD SVPRLFELSDELGLGHGASGMRWSQLSIFDDQDLLPQCCFLLVTPGKPSFLWIGEAFAAGLVQVVSSLEELQELARDIAVKDARRLSDRTLPLPSDVETAVI+PGDGNEPPEWWSAFESGYT
Sbjct:  837 MGLSPLREGRPSSLGVGVRGGRRGRDASVPRLFELSDELGLGHGASGMRWSQLSIFDDQDLLPQCCFLLVTPGKPSFLWIGEAFAAGLVQVVSSLEELQELARDIAVKDARRLSDRTLPLPSDVETAVIIPGDGNEPPEWWSAFESGYT 985
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BLAST of mRNA_Ecto-sp6_S_contig96.18676.1 vs. uniprot
Match: A0A835YKW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKW6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.130e-5
Identity = 33/102 (32.35%), Postives = 50/102 (49.02%), Query Frame = 1 
Query:  148 WSQLSIFDDQDLLPQCCFLLV---TPGKPSFLWIGEAFAAGLVQVVSSLEELQELARDIAVKDARRLSDRTLPLPSDVETAVIVPGDGNEPPEWWSAFESGY 444
            W +LS++DDQDL P  C+LL+   +    +F WIG  FAA  ++ +   E L  ++                P   D   AV+   +  E  E+W+AFE+GY
Sbjct:  663 WRRLSVYDDQDLAPDACYLLLCQCSARAAAFAWIGHEFAAAHMRALPPREFLAAVSA----------CSEQWPAGVDAGAAVVEMPEA-ESDEFWAAFEAGY 753
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJS8_ECTSI2.480e-10499.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2L8_9PHAE9.240e-9397.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YKW6_9STRA1.130e-532.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:636577..638459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size450
Hectar predicted targeting categoryother localisation
Exons3
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350594.1730285-CDS-Ecto-sp6_S_contig96:636576..6367531682350594.1730285-CDS-Ecto-sp6_S_contig96:636576..636753Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 636577..636753 +
1682350594.181608-CDS-Ecto-sp6_S_contig96:637480..6375731682350594.181608-CDS-Ecto-sp6_S_contig96:637480..637573Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 637481..637573 +
1682350594.189622-CDS-Ecto-sp6_S_contig96:638279..6384591682350594.189622-CDS-Ecto-sp6_S_contig96:638279..638459Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 638280..638459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18676.1prot_Ecto-sp6_S_contig96.18676.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 636577..638459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18676.1

>prot_Ecto-sp6_S_contig96.18676.1 ID=prot_Ecto-sp6_S_contig96.18676.1|Name=mRNA_Ecto-sp6_S_contig96.18676.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=150bp
MGLSPLSEGRPSSLGVGVRGGGRGRDTSVPRLFELSDELGLGHGASGMRW
SQLSIFDDQDLLPQCCFLLVTPGKPSFLWIGEAFAAGLVQVVSSLEELQE
LARDIAVKDARRLSDRTLPLPSDVETAVIVPGDGNEPPEWWSAFESGYT*
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mRNA from alignment at Ecto-sp6_S_contig96:636577..638459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18676.1 ID=mRNA_Ecto-sp6_S_contig96.18676.1|Name=mRNA_Ecto-sp6_S_contig96.18676.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1883bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:636577..638459+ (Ectocarpus species6 EcLAC_371)
ATGGGGCTGTCTCCTTTGAGCGAGGGTCGTCCGTCTTCGCTGGGCGTCGG
GGTGCGGGGGGGAGGGAGAGGGCGCGACACCAGTGTCCCCCGGCTGTTTG
AGCTCTCCGACGAGCTCGGGCTGGGGCACGGGGCTAGCGGGATGCGGTGG
AGCCAGCTGTCGATTTTTGACGATCAGGTGGGCTGTTTGGTGGGTCTTGT
CTCTTTCCTCGGCGTTGCTGTGGAGCGGTTATGGCGGTGTTGCTTTGATT
GGAAACGCGAGGTGCCACATGTTGTGTATGGGTGGGCCGCGCTGACCGGC
TGACCAGTTGAGTGAAGTCGGTTTCATCGAAATATGTCGGTTTCAGCAGG
ACTGAAAACGTGCATGAGAAGTTTTTCTCATCTGCAGGGCTCCCCCTGAC
AAGGGGCGCCACGAAGGAGACTGGGCACAAAACTCTATTCTGCGGATGTG
TCTGTAGGTGTGCACGTATGGGTGTGGATTTCTTGTTTTTTTCGTAAAGA
GCATCGAGGCGTCTATCCGGCTGACCGAGGAAAACGGTCGGTATTTGTGT
GACAAACACACCCGATCACGTTTTGCTCGGGGTGGAGCATGTCCGCCGGT
GCTGCTCCCTACATCGATTGATTTAGGCTTGGATTGCGGTTGGTTGATTT
AACCCCTGGCTTGTGGACACAGCTTCTTAATAGCTATCGTGGCTGTCACC
ACTTCGCGTTCTATACCCTTTCTCTAGCACGGTGCGTGGGCCCCTTTGCA
TCATATGAATCAAGCTCAACATGCTCCGGCCCCGCTTCACAAGACATGTT
CGATTCGGAGACTTTACCCATGAATACGACAGTGCGTATTGATTTATATT
TCTCCAACCCCCTCCCCAACTCGCGTCCTCTCTCGCCTCTGACGGATGTC
TTAGGATCTGTTGCCGCAGTGCTGCTTCCTGCTAGTGACTCCCGGCAAGC
CGAGCTTCCTGTGGATCGGAGAGGCCTTCGCTGCGGGTCTTGTGCAGGTG
ACAGATGGGATGCTGCGACTGGGAGACAGACAAATCCACATGGCCTCGTA
TCGGGGCTGAGATTTGCTACAGGTTGACTCAAGCTTGCAGACGTGTGAAT
GATGTGCTTGGAGAGGTGGTGGTAGTTTCCTAGTTGACACCTGTAGTGTG
GCGTTCTCACCCTCCTGACACTAACCCTGAGTCGGTTGAATCGTTGCCAT
CCGCACTTGGAGGTGGTGAGTAAATGAGTAAATACTTTCACGACCGCCTT
GGTACGTGGTGGCTGGTGTCGCTGACGGTGCCTGTTGTTGTGTCTTGAGG
TGGGCGGGGGCAACGCAAAACTTTCTAGACGTTCTTTGTCAAGGTGGCAT
AAATGAACGCCAATACCTGTGAACAGAAGGAATCGTTCTCGATGGAGACG
TGCAAAGGTGGTGTCCTCGCACATGTAATGTAAATAGTTGTCTTCATCTC
CTTATTTGAACCTTGCCGTCCCTGTCACCCTTCAAAACCTTATCCAACCG
CGAAATGAAGACATGCACCCACCGTCTCGACGAAGCTACCATCGACCTTT
TCCTCAAAAACCCGGCACCCTTCACGCCTGCCTCCGCATCGCTCGACACA
TGTGAATTGTAATGATGTATCGTTAGAGAACAACGACCCCCAAGTTCGTA
CCTCGCCAAAACACACCACTCGCACGAAACAAAATCCGGCACCACTACCA
CAGGTTGTGAGCTCGCTGGAGGAGCTGCAGGAGCTGGCCAGAGACATCGC
CGTGAAGGACGCGAGGAGACTATCGGACCGGACACTTCCCTTACCCTCGG
ACGTGGAGACGGCGGTGATCGTTCCTGGAGACGGCAACGAGCCTCCGGAG
TGGTGGTCCGCATTCGAGAGCGGGTACACGTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:636577..638459+

>mRNA_Ecto-sp6_S_contig96.18676.1 ID=mRNA_Ecto-sp6_S_contig96.18676.1|Name=mRNA_Ecto-sp6_S_contig96.18676.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:636577..638459+ (Ectocarpus species6 EcLAC_371)
ATGGGGCTGTCTCCTTTGAGCGAGGGTCGTCCGTCTTCGCTGGGCGTCGG
GGTGCGGGGGGGAGGGAGAGGGCGCGACACCAGTGTCCCCCGGCTGTTTG
AGCTCTCCGACGAGCTCGGGCTGGGGCACGGGGCTAGCGGGATGCGGTGG
AGCCAGCTGTCGATTTTTGACGATCAGGATCTGTTGCCGCAGTGCTGCTT
CCTGCTAGTGACTCCCGGCAAGCCGAGCTTCCTGTGGATCGGAGAGGCCT
TCGCTGCGGGTCTTGTGCAGGTTGTGAGCTCGCTGGAGGAGCTGCAGGAG
CTGGCCAGAGACATCGCCGTGAAGGACGCGAGGAGACTATCGGACCGGAC
ACTTCCCTTACCCTCGGACGTGGAGACGGCGGTGATCGTTCCTGGAGACG
GCAACGAGCCTCCGGAGTGGTGGTCCGCATTCGAGAGCGGGTACACGTAG
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