mRNA_Ecto-sp6_S_contig96.18675.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18675.1
Unique NamemRNA_Ecto-sp6_S_contig96.18675.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig96.18675.1 vs. uniprot
Match: D7FJS7_ECTSI (MAP kinase phosphatase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS7_ECTSI)

HSP 1 Score: 531 bits (1368), Expect = 3.800e-188
Identity = 276/292 (94.52%), Postives = 276/292 (94.52%), Query Frame = 1 
Query:    1 MPLTIEPGGDCVPTELEKKRAKLEKYRYECSEVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLEYTGRFNFLRLNFYDHRTEDCAWFMYKAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSWPLLYRTAWHVPLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLVVPATTAXXXXGRAKVTASMGVIPSRIRGGFAPSCSSTRQIRTGGRLSTPSPAAAXXXXXXXXAVIAN 876
            MPLTIEPGGDCVPTELEKKRAKLEKYRYECSEVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLEYTGRFNFLRLNFYDHRTEDCAWFMYKAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPS PLLYRTAWHVPLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLVVPAT  XXXX RAK T SMGVIPSRIRGGFAPSCSST       RLSTPSP   XXXXXXXXAVIAN
Sbjct:    1 MPLTIEPGGDCVPTELEKKRAKLEKYRYECSEVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLEYTGRFNFLRLNFYDHRTEDCAWFMYKAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSSPLLYRTAWHVPLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLVVPATAGXXXXXRAKATVSMGVIPSRIRGGFAPSCSSTS------RLSTPSPXXXXXXXXXXXAVIAN 286
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BLAST of mRNA_Ecto-sp6_S_contig96.18675.1 vs. uniprot
Match: A0A6H5L2L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L8_9PHAE)

HSP 1 Score: 549 bits (1415), Expect = 3.290e-186
Identity = 323/396 (81.57%), Postives = 327/396 (82.58%), Query Frame = 1 
Query:    1 MPLTIEPGGDCVPTELEKKRAKLEKYRYECSEVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLEYTGRFNFLRLNFYDHRTEDCAWFMYKAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSWPLLYRTAWHVPLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLVVPATTAXXXXGRAKVTASMGVIPSRIRGGFAPSCSSTRQIRTGG-------------------RLSTPSPAAAXXXXXXXX-------------------------------AVIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAGVSVPWTWRESEVSARGAPK 1038
            MPLTIEPGGDCVPTELEKKRAKLEKY+YECSEVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLEYTGRFNFLRLNFYDHRTEDCAWFMY+AFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPS PLLYRTAWHVPLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLVVPAT      GRAK T SMGVIPSR+RGGFAPSCSSTRQIRTGG                      +P P AA   XXX                                 AVIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAGVSVPWTWRESEVSARGAPK
Sbjct:  121 MPLTIEPGGDCVPTELEKKRAKLEKYKYECSEVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLEYTGRFNFLRLNFYDHRTEDCAWFMYQAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSSPLLYRTAWHVPLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLVVPATAGSA--GRAKATGSMGVIPSRVRGGFAPSCSSTRQIRTGGFALPSPPSRTPKANNKRGSSFESPLPPAAATAXXXRPHALSXXXXXXXXXXXXXXXXXXXXXXXXXXXAVIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAGVSVPWTWRESEVSARGAPK 514
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BLAST of mRNA_Ecto-sp6_S_contig96.18675.1 vs. uniprot
Match: A0A7S2V0L7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0L7_9STRA)

HSP 1 Score: 175 bits (444), Expect = 7.030e-48
Identity = 91/219 (41.55%), Postives = 124/219 (56.62%), Query Frame = 1 
Query:   61 AKLEKYRYECSEVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLEYTGR------------FNFLRLNFYDHRTEDCAWFMYKAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSWPLLYRTAWHVPLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLVVP 681
            AKL  +   CS V    L+VSG+  A  + L+    ITH++NCA   CPNY E                  +L  N +D + ED   F+Y++FDF+++  E  GRVLVHCV+GVSRSCT+ IA++ML +GV + EAY  VR  R +C+PN  FI +LL WQ+ R QP S P+ YR A H    P+ L+ K+C   +       T + LD R C+LL  P
Sbjct:   60 AKLAHFAEICSSVLPDLLFVSGKKVAANRKLLQENKITHVLNCARCHCPNYFEEKSSSANTTTQGEADGLRYLSFNLFDSKMEDITCFLYQSFDFIESCREAGGRVLVHCVEGVSRSCTVCIAYVMLHRGVKFPEAYEYVRHARNVCSPNAAFIAALLSWQKMRVQPVSHPMAYRVAPHGEHDPHTLLPKLCRKHNGLDPAVPTASILDPRTCFLLWRP 278
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BLAST of mRNA_Ecto-sp6_S_contig96.18675.1 vs. uniprot
Match: A0A835YKW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKW6_9STRA)

HSP 1 Score: 176 bits (446), Expect = 7.350e-46
Identity = 108/325 (33.23%), Postives = 141/325 (43.38%), Query Frame = 1 
Query:   13 IEPGGDCVPTELEKKRAKLEKYRYECSEVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLEYTGR-------------FNFLRLNFYDHRTEDCAWFMYKAFDFMKAAEEQR---------------------------------------------------------------------------------GRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSWPLLY----------RTAWHVPLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLV 675
            ++ G +  P E  ++R++LE++R+ CSE+   FLYVSGE+ A     +A  GITH+INCAGP CPNY E                   +LRL+FYD  +ED AWF+Y A DF+ +A +Q                                                                                   RVLVHC QGVSRSC LA AWLM    + Y +AY  VR  R ICAPN GF C+LLEW+RR                     RTA+H PLFP D VLK+C   + R  +   +  LD   C+++V
Sbjct:   37 MDAGTEANPAE--ERRSRLEEFRFVCSEIVPGFLYVSGEEVACDGTALARVGITHVINCAGPHCPNYHETAAXXXXXXXXXXSAQSIKYLRLDFYDSASEDLAWFLYPALDFIDSAAQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSNGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGARVLVHCAQGVSRSCALAAAWLMYAHNLSYRDAYASVRAARAICAPNAGFACALLEWERRXXXXXXXXXXXXXXXXXXXXLRTAYHSPLFPGDQVLKLCTDAATRAPLAPRVDLLDPAACFVVV 359
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BLAST of mRNA_Ecto-sp6_S_contig96.18675.1 vs. uniprot
Match: A0A7S4DF41_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DF41_HETAK)

HSP 1 Score: 154 bits (389), Expect = 2.470e-42
Identity = 75/155 (48.39%), Postives = 99/155 (63.87%), Query Frame = 1 
Query:   52 KKRAKLEKYRYECSEVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLEYTGRFNFLRLNFYDHRTEDCAWFMYKAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRR 516
            +K AKL  +   CSEV   +LYV+G+  A  +  +   GITHI+N +   CPN+ E  GRF +L    +D R E+  WFMY+AFDF++ A   RGR LVHCV+GVSRSC LA A+LM  + + YD+A   VR  R + +PN GF C LLEWQ+ R
Sbjct:   23 RKSAKLRHFSVLCSEVLE-WLYVAGKAVAGNEEQLIDNGITHILNSSVTHCPNFFEAGGRFAYLGFRLHDSRDEEVVWFMYQAFDFIEGARRARGRCLVHCVEGVSRSCALAAAYLMWRQTLPYDQALQAVRAARGVASPNIGFACQLLEWQKLR 176
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BLAST of mRNA_Ecto-sp6_S_contig96.18675.1 vs. uniprot
Match: A0A7J7Q0U8_9CHLO (MAP kinase phosphatase 1 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q0U8_9CHLO)

HSP 1 Score: 149 bits (376), Expect = 5.690e-39
Identity = 91/237 (38.40%), Postives = 122/237 (51.48%), Query Frame = 1 
Query:   49 EKKRAKLEKYRYECSEVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLEYTGRFNFLRLNFYDHRTEDCAWFMYKAFDFMKAAEEQRG--------------------RVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSWPLLYRTAWHVPLFPNDLVLKI------CIHESDRTNVKATLAALDSRGCYLLVVP 681
            E +R K  KY  +CS+V+   +YVSG   A+ + ++A+ GITH++NC G   P Y +   R  +  L   D   ED    +Y AFDFM+ A +                       RVLVHC QGVSRS ++ IA+LM   G+ Y E Y  VR  R + +PN GF C L+ W +RRQQ P    +YR A H P  P  LV K       C H        A +AALDSRGC+++ +P
Sbjct:   26 ELRRQKFAKYEMQCSQVAEG-VYVSGAAVAQDRAILAAHGITHVVNCVGALYPEYFK-DDRIAYKTLWLADTPHEDITCILYDAFDFMEEARKGSAXXXXXXXXXXXXXXXXXXXXRVLVHCSQGVSRSTSIVIAYLMWRTGLTYQEVYQAVRALRGVTSPNVGFTCQLINWAKRRQQQPDGARVYRIAPHCPDNPTYLVAKPVGPKPGCSH--------ADVAALDSRGCFVVHLP 252
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BLAST of mRNA_Ecto-sp6_S_contig96.18675.1 vs. uniprot
Match: A0A7R9V781_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V781_9CHLO)

HSP 1 Score: 149 bits (376), Expect = 1.090e-37
Identity = 83/215 (38.60%), Postives = 123/215 (57.21%), Query Frame = 1 
Query:   40 TELEKKRAKLEKYRYECSEVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLEYTGRFNFLRLNFYDHRTEDCAWFMYKAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQP---PSWPL-LYRTAWHVPLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLL 672
            +E +++RA+L  +  +CS V    L+VSGE  A+ + L+A  GITH++NC G  CP   ++     +     +D+  ED    +++  +F+ +A    G VLVHC QGVSRS TLAIA++M   G  +D+A  +V++ R I +PN GF C LL+WQ+RR  P   PS  L L R A H P  P+ L+ +        T+  AT   LD RG +L+
Sbjct:   70 SETQQRRARLAFFERQCSRVLPQGLFVSGETVARDRQLLAGSGITHVLNCVGFTCPE--DFKEELTYKTFYLHDNPGEDLLSVLFEGLEFIDSALRAGGNVLVHCSQGVSRSATLAIAYIMWKFGRSFDQAMAQVKEARGIASPNIGFTCQLLQWQKRRSAPFAPPSSRLRLLRVAPHCPQTPSLLLARPVAPPPPSTSPHATWRQLDRRGAFLV 282
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BLAST of mRNA_Ecto-sp6_S_contig96.18675.1 vs. uniprot
Match: A0A7J7Q184_9CHLO (Protein-tyrosine phosphatase-like protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q184_9CHLO)

HSP 1 Score: 151 bits (381), Expect = 1.250e-37
Identity = 92/232 (39.66%), Postives = 122/232 (52.59%), Query Frame = 1 
Query:   49 EKKRAKLEKYRYECSEVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLEYTGRFNFLRLNFYDHRTEDCAWFMYKAFDFMKAAEE---------------QRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSWPLLYRTAWHVPLFPNDLVLKI------CIHESDRTNVKATLAALDSRGCYLLVVP 681
            E +R K  KY  +CS+V+   +YVSG   A+ + ++A+ GITH++NC G   P Y +   R  +  L   D   ED    +Y AFDFM+ A +                  RVLVHC QGVSRS ++AIA+LM   G  Y E Y  VR  R + +PN GF C L+ W +RRQQ P    +YR A H P  P  LV K       C H        A +AALDSRGC+++ +P
Sbjct:   97 ELRRQKFAKYEMQCSQVAEG-VYVSGAAVAQDRAILAAHGITHVVNCVGALYPEYFK-DDRIAYKTLWLADTPHEDITCILYDAFDFMEEARKGSTAXXXXXXXXXXXXXXRVLVHCSQGVSRSTSIAIAYLMWRTGGTYQEVYQAVRALRGVTSPNVGFTCQLINWAKRRQQQPDGARVYRIAPHCPDNPTYLVAKPVGPKPGCSH--------ADVAALDSRGCFVVHLP 318
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BLAST of mRNA_Ecto-sp6_S_contig96.18675.1 vs. uniprot
Match: A0A2P6VKG1_9CHLO (Tyrosine-phosphatase MKP1-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VKG1_9CHLO)

HSP 1 Score: 151 bits (381), Expect = 1.960e-37
Identity = 95/234 (40.60%), Postives = 122/234 (52.14%), Query Frame = 1 
Query:   19 PGGDCVPTELEKKRAKLEKYRYECSEVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLEYTGRFNFLRLNFYDHRTEDCAWFMYKAFDFMKAAEE---------QRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSWPLLYRTAWHVPLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLVVPATTA 693
            P  D  PTEL  ++ KL  Y  +CS V+   LYVSGE  A+ +  +A++GITH++NC G   P Y E    +  L L   D   ED    +Y  FDF++AA             GRVLVHC QGVSRS +LAIA+LM  +G  YD+A+  V+  R +  PN GFIC LL+W +RRQ       LYR A      P  LV K               AALD RG ++L  P + A
Sbjct:   62 PRDDGPPTELRARKEKLALYNGQCSRVAEG-LYVSGEAVARSREALAAEGITHVVNCVGFLYPPYHEPELAYQTLFLQ--DTPGEDILCVLYDVFDFIEAATSGAGGGAAGTSPGRVLVHCSQGVSRSASLAIAYLMWKRGTPYDDAFQEVKASRGVANPNIGFICQLLQWYKRRQASADTWRLYRVAPQSSAAPQQLVAK-------PVAAAGLGAALDRRGAFVLQGPGSVA 285
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BLAST of mRNA_Ecto-sp6_S_contig96.18675.1 vs. uniprot
Match: D8UBV1_VOLCA (MAP kinase phosphatase 1 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UBV1_VOLCA)

HSP 1 Score: 143 bits (361), Expect = 9.210e-37
Identity = 82/221 (37.10%), Postives = 113/221 (51.13%), Query Frame = 1 
Query:   19 PGGDCVPTELEKKRAKLEKYRYECSEVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLEYTGRFNFLRLNFYDHRTEDCAWFMYKAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSWPLLYRTAWHVPLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLVVP 681
            P  D  P+E + +R K   +   CSEVS+  L++SG+  AK +  +   G+TH++NC G  C  Y  +     +  L   D   ED    +Y   D++ +A    GR+LVHC QGVSRS TL IA++M   G  YDE +  V+  R +  PN GF C LL+WQ+R     S   +YR A H    PN LV K+        N   T   LD RG ++L  P
Sbjct:   31 PVEDAAPSETQLRRQKYLFFEKHCSEVSAG-LFLSGDYVAKNRETLRQAGVTHVLNCVGFICKEY--FKDELTYKTLYLQDTPAEDILCVLYDCLDYIDSALHSGGRILVHCSQGVSRSATLVIAYIMWRSGKPYDEVFAAVKAVRGVANPNIGFTCQLLQWQKRAASAKSRMRMYRIASHCVHAPNYLVPKLITPPKQYPN--NTHRDLDPRGAFVLQTP 246
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJS7_ECTSI3.800e-18894.52MAP kinase phosphatase 1 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L2L8_9PHAE3.290e-18681.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V0L7_9STRA7.030e-4841.55Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835YKW6_9STRA7.350e-4633.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DF41_HETAK2.470e-4248.39Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7J7Q0U8_9CHLO5.690e-3938.40MAP kinase phosphatase 1 n=1 Tax=Scenedesmus sp. N... [more]
A0A7R9V781_9CHLO1.090e-3738.60Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A7J7Q184_9CHLO1.250e-3739.66Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
A0A2P6VKG1_9CHLO1.960e-3740.60Tyrosine-phosphatase MKP1-like n=1 Tax=Micractiniu... [more]
D8UBV1_VOLCA9.210e-3737.10MAP kinase phosphatase 1 n=1 Tax=Volvox carteri f.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:626751..634790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score536.2
Seed ortholog evalue1.1e-149
Seed eggNOG ortholog2880.D7FJS7
Model size1040
KEGG koko:K04459,ko:K21278
KEGG Pathwayko04010,ko04726,ko05418,map04010,map04726,map05418
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG1716@2759
Ec32 ortholog descriptionProtein-tyrosine phosphatase-like
Ec32 orthologEc-06_010330.1
EC3.1.3.16,3.1.3.48
Cds size1038
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18675.1prot_Ecto-sp6_S_contig96.18675.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 626751..634790 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350594.1080067-CDS-Ecto-sp6_S_contig96:626750..6268461682350594.1080067-CDS-Ecto-sp6_S_contig96:626750..626846Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 626751..626846 +
1682350594.1173697-CDS-Ecto-sp6_S_contig96:631128..6312541682350594.1173697-CDS-Ecto-sp6_S_contig96:631128..631254Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 631129..631254 +
1682350594.1249723-CDS-Ecto-sp6_S_contig96:631943..6320921682350594.1249723-CDS-Ecto-sp6_S_contig96:631943..632092Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 631944..632092 +
1682350594.132848-CDS-Ecto-sp6_S_contig96:632365..6325161682350594.132848-CDS-Ecto-sp6_S_contig96:632365..632516Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 632366..632516 +
1682350594.1406438-CDS-Ecto-sp6_S_contig96:634115..6343991682350594.1406438-CDS-Ecto-sp6_S_contig96:634115..634399Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 634116..634399 +
1682350594.1486053-CDS-Ecto-sp6_S_contig96:634558..6347901682350594.1486053-CDS-Ecto-sp6_S_contig96:634558..634790Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 634559..634790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18675.1

>prot_Ecto-sp6_S_contig96.18675.1 ID=prot_Ecto-sp6_S_contig96.18675.1|Name=mRNA_Ecto-sp6_S_contig96.18675.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=346bp
MPLTIEPGGDCVPTELEKKRAKLEKYRYECSEVSSSFLYVSGEDAAKQQG
LVASKGITHIINCAGPQCPNYLEYTGRFNFLRLNFYDHRTEDCAWFMYKA
FDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQ
GRPICAPNTGFICSLLEWQRRRQQPPSWPLLYRTAWHVPLFPNDLVLKIC
IHESDRTNVKATLAALDSRGCYLLVVPATTAGGGGGRAKVTASMGVIPSR
IRGGFAPSCSSTRQIRTGGRLSTPSPAAARARAAAAAAVIANAKAVAAVA
AAKEAQAVAAAAAAEEAVMVAKAVEAGVSVPWTWRESEVSARGAPK
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mRNA from alignment at Ecto-sp6_S_contig96:626751..634790+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18675.1 ID=mRNA_Ecto-sp6_S_contig96.18675.1|Name=mRNA_Ecto-sp6_S_contig96.18675.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8040bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:626751..634790+ (Ectocarpus species6 EcLAC_371)
ATGCCGTTGACGATCGAGCCCGGGGGGGATTGCGTGCCGACGGAGCTGGA
GAAAAAGAGGGCTAAGCTGGAGAAGTACAGATACGAGTGCAGCGAGGTGG
GTGGGGGTCTGCGGGCGCGTGGGCACCCGGGGAAGGGTTTTTTGAAAAAT
GCGTTGACTGACCGACCCGCGGTTGTTGTCGTTTTTGATTTGCCACCCAG
TTTTTCTCTGTCTCTTGGATATAGTGCAGATTCAGACATAGGGCGGGAAG
GTTTCGTATCGGGGATGGTGCGAAGGAGGGTTAATATGGCGTGCGTGTTT
TAAACCTGGGCAGTAGTTCGCGGACCAAGCGCAAGAGCGGTGCAGTGGGG
GCGTCTTGGAAAATAGTGGCAAGGAAAGGCATGCGTGGTTGACTGTATCT
ACCCTGAAGTTTTCTTGCTTCCTCTCTCTCACGCGCGCTGTACGTCCCCT
CTTTAGAAAGTCGCCCACAATTTGTAAAGTCGAGAGTTGGTCCGTTAGAC
CTCGCCGCTCCCGCGATTTTCAAAAGTCACGTCTCAGTCTCAACAAGGCA
GACCCGGAGCTTTCCCGACGCGTGCCTCTGTGGGGTAGAGAGGCAGTGGC
GGGCCATCGCCGTTCGCAAGTCGTGAAAATAACCCGCGAGTGTTTATACA
TCATTTGCTGGTAGCCGTCCTCTCTCTCTCCTACTCGTGTGTACAATTCC
GATCCGATAATGTCTGTTGCCGCTTTCTTCTTCTTGCGAAAGAAAAAACG
CTCCTTCAATTTTTTCAAGCGGCGGGTAAGGTTCCTCACGGAATATGTTA
GGGTAGGTCTGAAGAACGCGGTTTTTTCAGCCATTATGCGCTCGTCTATT
CGAGGCACGCGGCGCGCCCTCTCCCTCTTGCTCGCAAGCTGGGATCAGTT
TTTTTGTCTCTTGTGTGCTTGAAAATGGATGATTGCAATGCGCGGCCTTC
CCAAATACACCGGAGCATCTTGACGGACAGACGCGAAGGTAGCAACCGCG
CGACGCACATTCCGGTTCCCTCGAAATATTTTTCCCGTCGTTTCATTATC
TATTCGCTCGAACGGTGAATTAGAGCGCTGCCAACCATCGGGATGCACAT
GTAGCAAGACATCACATCCCTGTCGTGCCGGCCGTCCCGTTTACAAACAT
TTTTCGTCAGTTTGTTGCGTGTAAAGGCAAAGACGCAAAACGAGTACCAT
CTAGTTCTTTAGAAATTCGGTGTGTTTCTGTTGCGCGCCTGCTGCCTTTG
GGAGCCGTTTGATTGGTGCATCCGTTTCTGTAAGCGTTGGGCAGCATCGT
CTCCATTCGGAGAGCCCGCCCCAGGGTCGTGCGCCAAAAGCAGACAGCAG
TGGCAGTCGCAATCATCCGACAGCAAGCAATACGCCCGTGTAGTTTCGTA
TATGACGGTGTGCGAAGCCCGTCCGCTTGTTGTACACACATAATACACGA
ACGAATTTTTGTAAGTGCGGCCGACTTTTTGGATAGCTGCATCAGCGCTC
TTGGGGTGGTACACGGACGAGGCGCTACAATCTACAGTAGCTACAGTAGC
TACAGTATGTTCCAGGGGGTTTCCCTCTCAACCGTCAACCGTGCTGAAAA
TGGGTTTCAACGCACCAATCAGAACTTCGAACGGGGTACCATATATTACG
AACGGGTGTTCTTTCTTATCAATGGTACAATGCATGTTGTTCCCGTACTC
GGCCAGCAGAAAGCAGAACGATTTCGCTTTCGCCTCCATCCGTGGACATG
ACTCCAAGGTACAGCACTAAATAGCAACATATTGACATGTTGTGCATCCC
CACCTGGCGAGGATGTCTCCCAAAAATCAAATTAAACAACATTTCAAACA
TTCAAAATATTTCAAATGGTCTCTCTCGAGTGGGCTTGTCGGGCTACATG
AGAGCCCAGAGTGTCGTCGAACGGGAATGCAAGATGAAAATATCCATGTA
CAGCGGGCAGCAGGACACAACCCAAACCACAGCTGCCTGCCAACTGCAGT
GTAACGTTTTCCCAAGCTCACACAGCTGATGTGATTTTGACTCGAACAGC
CAGCCCAACGAACCAAAAAGAAAAAGTTACAAGATGTCGCTTTGTGTGCT
GCTAGTGAAATCGTGGAAATACAGGTGGCCTCCCTCTGACGCTATGGATT
CATTGCTAATCTAAGACTCTTTTTTCTCAGATAGAGATGGATTCGTTGTG
TCGTATTAAGAAAATAAAAAAAAAACTGTTCCCAGCAGTGCAACCCACTC
GTCTTATCAAACTTTTATTTGACGATTCCCTCCATAGCTTGAACATCCTC
GCGTACACAACACGGGCAATCAATCCTAAGCACATTGTTCTCACTGATTA
CGCGGAAAAGCATATCTGTGCCATCCAAACCCGTGCACAACAGCAATAAC
CCCCCCGCCCCCCACGCTGCATGCACAGAGGTACGCGTGCATCAGCTGTA
GGATTACGGAACTTGAAAAGCCTGTTCACGGCGGTGGTAGAAATGTTACT
TTCTCGGCGCACCCCTGTGCGATCGCTTGTGTTCAAAGTCCTTTCGTTCC
TGCTTAGCTTTTGTACCGCCCCCCAGTTCGATGGCGCTCCGGTACCATAC
CACTCTGCGGAATTTAATCTTCCGGTTCTATGCATACCAGTACGCGCACG
CCCGGATACTTGCGATGTGCCAATTGGGATACAGCGCCAGAGTACACTAA
ATAGTGGCGATTCTGGGTGATTTGATCTTCCATAGCACCCGTGTGAGACA
GCTGCGATGGGTGCGATGACGCGACACGCATACATGCCAGCAGGGAAGGG
TGATCACTACAACGCCTGTGTGATTTTACAGCGGGTAGTGTGCCAAGCAA
GGTTGGCAATGCGTTGTTCAGGCGCCACGAACAAGGAATGGTGTGGGTGC
CTGCTTTATCAACATGAGCGCATTATTTTGTCATACCACTCTGTGCTCTC
TCGGCTGCTGGCATGTTTAGCTCGCTCGTTCTTTTCCGTCAATAGTGCCC
AGTTATAAGCCACACTTCATGAAGCATTTTCTGCGCAATTTGGTGTGGAG
TGACAGGATATACCCTTCGACCTATTTTCCGTGAAGAAAATCTTCTCCAT
TTCGACATGTGGTCCACGACGGTGCCACAACAAACACAACAGCGGAGCGC
TATGAAGTGGCGATGACACTAGACCTCATGCCCGATTCTTTTTTTGGGGG
GGGGGTTCTCACCCCCGTGCGATGACCTCGATACTTTTGTGACGCGCCCT
GTGCGATGAGTCGCACCTTGAACATTTTGATTTCGATGTGCCTGCCAACA
TGGCTGCTACTACATTCAAGCTGCACCGCCATAAGCACTGTTGTGCTTCT
GATATTCCAAGGAATAGGGAGGAGGGGAGCGGGGGTGCGCCGCTAGACCA
AAACACACCTTATCTTGTAGCAACATCGCGCCAAGGACGGGCACCCTTCG
TGTGGATGTACTGCACTACAGCACGGGAGCGGTAAGAGAATTCGGGCGGC
CGTTCAAAAGCCGCGTCTTGCGATTTGCGACAGAAAATCTGGATACGCTA
CGTTCTATCCACTGATGTGGGAAGACAAACAAGCAGTGTCGCATTCGGTC
TGACGTGACGTGGAACAGGATTTCGGTTGATAGAGGCGTCTCGGTCGCGG
GCGGGCACGGGGTGGGATGCTCGGCTTTCTATGGGGAGGTACATCAAAGA
AGCACTGATTTCATAGTAGCACCGGTCTCAACAAAAGAAGGATCTTGCTG
CTACTAGTGACAGTAATGCTGCGACTTCTCTTGCGCATCCTCCGTTCATC
AAGTGTTGTCTGATCGTCTGATATTTCTGTATTGCGACGATTGCACGACA
CGCAACGGCGCAGCGCTAGTGATACGGAGCAACACTGATTACACAACTCT
ACACTGTCAAGTACGTATGCTCACGTTCTCTATTTGCGCTGCTGCTGCTG
CTGCAGCGGCGGCGGCGGCGGCGGCGGCGTCTACAACTAGCAACTTAATA
AGCTTCATTCATATGAGGCTGCCGCAATTCTCACACCCATGTATGTCGAG
ATTGGATCTGACGTGAGCCACCTTCGACATCCGAAGCTCACACGTTAATA
TGAATCCTTGACTTGATCGCCGGCGCTCTTTTCACCCCTCGCATCCTCGG
CAGTACATGCATGCTCGCTCTCTTGGACCACCGCGCTTCCCCTCCTATAC
TGCAGACTTTTTCCGACAATATTGTTGTCTTCACGTTACGCATCATTCCG
ACCCCTCTATCCAGTATTGTATGCATACCTTCATCTGTCGGCACTGATCT
ATCACTTGACGCGGTGGAATCCGTGGTCACAGGCTAGCTTACCCTACAAT
GCAATGAACCATGCCCCGAAAATACTAGGTGTCAAGCTCGTTTCTTTACG
TCTCGGGCGAAGACGCGGCGAAGCAGCAGGGGTTGGTGGCCAGCAAGGGC
ATCACGCACATCATCAACTGCGCCGGACCTCAGTGCCCAAACTATCTGGA
ATATGTGAGGAAGCTTTTTCCTGGTAACGGCGGTTGCCATGCTCGCCCGC
CTGTCTCCGTTATTCGTTTCCAACTACAGCCGTGCCCGCCTTGCAGACAC
CATGATTTTCAGAGGAATTGTGCCCTGCAGAGTGAATGATCACTATAGTT
GCAAGTTCTTTGTTAAGTACCAAGTCCACGCCTCGGCGACGCTTTCGTTG
GAAGGAACCCAAGGTTATGGTATGTTTGCTTGAAGCGGGGACAAATGCTG
TACAGCCGAAGTCCCGCAAGAGTTGCGCAGATGTGTTCCCCGACTCCGTG
AGTTCTGAATGTAATATATCGTGATGTTTTACCTACGCAGAGAGTGTACT
CGGAGATCACCCCCCTGTGTTGCTTTTTGTACGTAGGTGGCGATTGAAAG
CTGGCCTTCTCAGGCTGTATCGTTGGAGACGTGTGAGATCTGTCCATCGT
ATTTTGCATACAACCCTGCCTTTTTCACAGCGAGCCAGATTGATACCGAC
ACCAAGAACACTTGGCTCCTACGCGAGCAGTCCCCTCCAATGTTTTGGTA
CGCCGTAGGCTTGACTTGAGTGTTGCGGCACGTGGAGTTGACTTGTGTCG
CGTGTGACTTGTGCTGTAGCTCCCATCAACTCGCTCTAATATCTGCTCCG
TTTGCTCATCATCTCGCTCTAATTTCTGTTGTGTTCCGAACAGACCGGGC
GGTTCAACTTCTTGCGGCTGAACTTCTACGACCACCGAACGGAGGACTGT
GCGTGGTTCATGTACAAGGCCTTTGACTTCATGAAGGCCGCCGAGGAGCA
GAGAGGGAGGGTGCTGGTGCACTGCGTGCAAGGGGTTTCCAGGTGAGTTT
TGGCGTTTGTTGTCGTCTGGTTTCAGGAGGGGGTTGTAGGGGCTGCAGGA
TGTGATTTGTTCTGTTCCCGCAAACATTTCAGGTAGTTTGCGGTTGGTCG
ATATCGGACTTTTGTTGGTTGAAAGCAGCAGCAGCAGCGGCAATACACGC
AAGCGCAATGTTGAGTGCGTGGTTACGCTTGTCGTTGCGACCACGGTATC
ATGGTCATGAGACGTGACTGTCATGTCTCTTACACGAGCGTTCGCCTCTG
TTCCCTCCCGCCCAGGTCGTGCACGCTGGCGATCGCGTGGCTGATGCTGA
CGAAGGGGGTAGACTACGACGAGGCGTACCTGAGGGTGCGCCAAGGCAGG
CCGATCTGCGCGCCCAACACGGGCTTCATCTGCAGCCTCCTAGAGTGGCA
GCGAAGAAGGCAGCAGGTGATTGTTTTTTCTTTTGAATTTTCCGCGCTAA
CCAGCTGACCAATGAAAAGACGTCAGTCTCGGCGCAGTACAAAACACACA
ACACTTCTATCTGCCATGAACTGGGACTCCGTGAGGGGGCAGGATGGGGA
AGGGTAAACTATCCTTCGGATCAAAGACAGAAACGGTAGCGAGAGAAAAG
ATCTGCACACGTCTACCAAGGCTATTACCTTGTACCCGAGTTCGTTTAGG
AGTACTTTCACCATTATGTTGCTTGTTTTCACTCCCATTTTCTGATCATC
ATGTTGATAACAATCTCTTGGCAGTTCTTCCCTAGCCGTGCGTCTTTTTG
TTTTGAGGAAGGTCACCTGGCTCAAACCCTTTGCTCTCCTCCACCCCTCC
ATGTTTTCCTCCTCCATCGTCGTCTTGATCCTTCTTTCTTTCCCTTTTCT
CTTTCCTTCGTCTCCGTTACTCCCAAAGAATTACCCTCATTACTATCGTT
GTCGCAGGGATCCCAACCGATTGGCCCTGGTGAAAGTTGGTCGATCAGTA
GCCCATGACGTTTGAACACCCCTGTTCAAGACGGGGCGGAGCCAACGGCG
GAGGACGCCACCTACATCTACAGCTGCGACGATCTCGCGATGGACAGGAC
ACTCGTTCGAATGGCAACGGTGCTGCGAACGAGTGTCCTGTCCATCGCGA
GATCGTCGCAGCTGTAGATGTAGGTGGCGTCCTCCGCCGTTGGCTCCGCC
CCGTCTTGAACAGGGGTGTCAGCGTGTGTGGGTGTGTTGTGTGGTCCTTT
GATTTGCGTCGATTGCGCTAGCCGGACCAATGAAAACGCTTGTCTTACAG
CGGAATAGAGAACACAGGCACAATTTCTACTGTGCGTTGTGTACTTCTTT
AGTCCGCATGGAGGCGATCACCGACTGACCGATGATGACACGACTTGAGT
GCTTATCCCGATATAGAACGCGAACACGGTTTCCATTAGTAGTCATCGGG
CTTCCCCGGCAGGGAGGCGCGCGCTTGGGTGTGTAGGTGTGGGTGGGTGT
TTTCATTCCAGCAAGTAGTTCACGGTAGTTCCGCATCTCTGAGTTTCACA
TTACACAGGAAGGGTTGAGGGACTGGAGTGGACGAGCTCGCTCCACACTC
CACACACTTTAGGGCAAAATCGATGCCACTGATGTTTTCGGGAGGTCGTT
CGTTGGCGACGATTAGTGTTGTGTGGCGAGAGGTGGAAGCTAGTCGAGCA
GAATCTCCTCTCAAGCTGGAACGCGTCAGGTTTCCTTGACTTGTGTCCCC
CTTCAAATGGGCGCGGATTGTGTACCTGGGTGTCTTTTGAAGGCGATAAG
GGCGACTTTCACGCCTTCCCAAGCCCTCTCTGAAGCCTTCAGGACCATTC
TATGTGCTTGCTTCTCCCTCTATCCACGTACGCCATTCGGTTCATGGTTA
CACCTTCCCCCCCGCCCGACCAACGTATTTGCTCGCGTACGTACCCCTCT
TCATCCAAGTGTGTTTCATCCTTGCTCTGTCTGTGTCTCCCTCCTTCTCT
TTGTTACACTGACTCACACTCTCTCCCTCTCCTTTTCTCTCTCTCCTTAT
CCTCTCTCTCGGCAGCCGCCCTCTTGGCCGTTGCTCTACCGGACGGCGTG
GCACGTACCCCTCTTCCCGAACGACCTTGTCCTCAAGATCTGCATCCACG
AGAGCGACCGAACGAACGTCAAAGCCACCCTGGCGGCTCTCGACTCCCGC
GGCTGCTACCTTCTCGTCGTCCCGGCCACCACCGCCGGCGGCGGGGGGGG
GAGGGCAAAGGTGACAGCCAGCATGGGAGTGATCCCGTCCAGAATCCGAG
GAGGCTTCGCCCCTTCCTGTTCCTCGACCAGGCAGATACGAACCGGAGGG
TTCGGGTTGCCCACCCCGCCCTCCCGCACACCGAAGGCCAACAACAAGCG
CGGCAGTAGCTTCGAGTCTCCGTTGCCGCCAGCTGCCGCTACCGCTGCCG
CCGCTGCCGCTGCGCGGCCGCACGCGCTGTCCCTCGCCACCCGGTCCGTC
TCCCTCAGCCGCCTGTCGACCCCGTCCCCTGCAGCGGCGAGGGCGAGGGC
GGCGGCGGCGGCGGCGGTGATCGCGAACGCTAAGGCGGTGGCGGCGGTAG
CGGCGGCGAAGGAGGCGCAGGCGGTGGCGGCGGCGGCAGCGGCGGAGGAG
GCGGTGATGGTGGCGAAGGCCGTCGAGGCCGGCGTCTCTGTGCCGTGGAC
GTGGCGAGAGTCGGAGGTCTCGGCGAGAGGCGCGCCCAAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:626751..634790+

>mRNA_Ecto-sp6_S_contig96.18675.1 ID=mRNA_Ecto-sp6_S_contig96.18675.1|Name=mRNA_Ecto-sp6_S_contig96.18675.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1038bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:626751..634790+ (Ectocarpus species6 EcLAC_371)
ATGCCGTTGACGATCGAGCCCGGGGGGGATTGCGTGCCGACGGAGCTGGA
GAAAAAGAGGGCTAAGCTGGAGAAGTACAGATACGAGTGCAGCGAGGTGT
CAAGCTCGTTTCTTTACGTCTCGGGCGAAGACGCGGCGAAGCAGCAGGGG
TTGGTGGCCAGCAAGGGCATCACGCACATCATCAACTGCGCCGGACCTCA
GTGCCCAAACTATCTGGAATATACCGGGCGGTTCAACTTCTTGCGGCTGA
ACTTCTACGACCACCGAACGGAGGACTGTGCGTGGTTCATGTACAAGGCC
TTTGACTTCATGAAGGCCGCCGAGGAGCAGAGAGGGAGGGTGCTGGTGCA
CTGCGTGCAAGGGGTTTCCAGGTCGTGCACGCTGGCGATCGCGTGGCTGA
TGCTGACGAAGGGGGTAGACTACGACGAGGCGTACCTGAGGGTGCGCCAA
GGCAGGCCGATCTGCGCGCCCAACACGGGCTTCATCTGCAGCCTCCTAGA
GTGGCAGCGAAGAAGGCAGCAGCCGCCCTCTTGGCCGTTGCTCTACCGGA
CGGCGTGGCACGTACCCCTCTTCCCGAACGACCTTGTCCTCAAGATCTGC
ATCCACGAGAGCGACCGAACGAACGTCAAAGCCACCCTGGCGGCTCTCGA
CTCCCGCGGCTGCTACCTTCTCGTCGTCCCGGCCACCACCGCCGGCGGCG
GGGGGGGGAGGGCAAAGGTGACAGCCAGCATGGGAGTGATCCCGTCCAGA
ATCCGAGGAGGCTTCGCCCCTTCCTGTTCCTCGACCAGGCAGATACGAAC
CGGAGGCCGCCTGTCGACCCCGTCCCCTGCAGCGGCGAGGGCGAGGGCGG
CGGCGGCGGCGGCGGTGATCGCGAACGCTAAGGCGGTGGCGGCGGTAGCG
GCGGCGAAGGAGGCGCAGGCGGTGGCGGCGGCGGCAGCGGCGGAGGAGGC
GGTGATGGTGGCGAAGGCCGTCGAGGCCGGCGTCTCTGTGCCGTGGACGT
GGCGAGAGTCGGAGGTCTCGGCGAGAGGCGCGCCCAAG
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