mRNA_Ecto-sp6_S_contig96.18674.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18674.1
Unique NamemRNA_Ecto-sp6_S_contig96.18674.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig96.18674.1 vs. uniprot
Match: A0A6H5L2L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L8_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.990e-32
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = -2 
Query:    3 MDNDFVDVFPSAGGVGDSPVKTSATEEYLNPAGSSWSRPGLSLSIPADTGGREALVSPAVPGSRRAS 203
            MDNDFVDVFPSAGGVGDSPVKTSA EE+LNPAGSSWSRPGLSLSIPADTGGREALVSPAVPGSRRAS
Sbjct:    1 MDNDFVDVFPSAGGVGDSPVKTSAAEEHLNPAGSSWSRPGLSLSIPADTGGREALVSPAVPGSRRAS 67
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2L8_9PHAE1.990e-3297.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:626348..626581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size234
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_010340.1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350594.0843148-CDS-Ecto-sp6_S_contig96:626347..6265811682350594.0843148-CDS-Ecto-sp6_S_contig96:626347..626581Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 626348..626581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18674.1prot_Ecto-sp6_S_contig96.18674.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 626348..626581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18674.1

>prot_Ecto-sp6_S_contig96.18674.1 ID=prot_Ecto-sp6_S_contig96.18674.1|Name=mRNA_Ecto-sp6_S_contig96.18674.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=78bp
MDARLEPGTAGDTRASLPPVSAGIESDSPGRDHELPAGLRYSSVALVLTG
LSPTPPAEGNTSTKSLSMLLQARGSGV*
back to top

mRNA from alignment at Ecto-sp6_S_contig96:626348..626581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18674.1 ID=mRNA_Ecto-sp6_S_contig96.18674.1|Name=mRNA_Ecto-sp6_S_contig96.18674.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:626348..626581- (Ectocarpus species6 EcLAC_371)
ATGGACGCCCGCCTCGAGCCGGGGACCGCCGGGGACACCAGGGCTTCCCT
GCCTCCTGTATCGGCGGGGATCGAGAGCGATAGCCCGGGGCGAGACCACG
AACTTCCTGCCGGGTTGAGGTACTCCTCGGTAGCGCTCGTCTTGACGGGG
CTGTCGCCAACCCCTCCCGCGGAGGGGAACACGTCCACGAAGTCGTTGTC
CATGCTGCTGCAGGCACGGGGATCCGGGGTCTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:626348..626581-

>mRNA_Ecto-sp6_S_contig96.18674.1 ID=mRNA_Ecto-sp6_S_contig96.18674.1|Name=mRNA_Ecto-sp6_S_contig96.18674.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:626348..626581- (Ectocarpus species6 EcLAC_371)
ATGGACGCCCGCCTCGAGCCGGGGACCGCCGGGGACACCAGGGCTTCCCT
GCCTCCTGTATCGGCGGGGATCGAGAGCGATAGCCCGGGGCGAGACCACG
AACTTCCTGCCGGGTTGAGGTACTCCTCGGTAGCGCTCGTCTTGACGGGG
CTGTCGCCAACCCCTCCCGCGGAGGGGAACACGTCCACGAAGTCGTTGTC
CATGCTGCTGCAGGCACGGGGATCCGGGGTCTGA
back to top