mRNA_Ecto-sp6_S_contig96.18663.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18663.1
Unique NamemRNA_Ecto-sp6_S_contig96.18663.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig96.18663.1 vs. uniprot
Match: D7FJR7_ECTSI (PPIase cyclophilin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJR7_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 2.070e-50
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = -2 
Query:  439 ARVEKQQEKPGGEYGDVLRPPPVMMKDEFVVPQAAEVAVPQTPKELAGGRDGDGTSPNQGVSFSAIVFLALALGAVVLVWKKSKKDERSVR 711
            ARVEKQQEKPGGEYGDVLRPPPVMMKDEF+VPQAAE+AVPQTPKELAGGRDGDGTSPNQ VSFSAIVFLALALGAVVLVWKKSKKDERSVR
Sbjct:  211 ARVEKQQEKPGGEYGDVLRPPPVMMKDEFIVPQAAEMAVPQTPKELAGGRDGDGTSPNQSVSFSAIVFLALALGAVVLVWKKSKKDERSVR 301
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJR7_ECTSI2.070e-5096.70PPIase cyclophilin-type domain-containing protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:555514..556225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size712
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350586.4441085-UTR-Ecto-sp6_S_contig96:555513..5555521682350586.4441085-UTR-Ecto-sp6_S_contig96:555513..555552Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 555514..555552 +
1682350586.4627123-UTR-Ecto-sp6_S_contig96:555945..5562251682350586.4627123-UTR-Ecto-sp6_S_contig96:555945..556225Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 555946..556225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350586.4533367-CDS-Ecto-sp6_S_contig96:555552..5559451682350586.4533367-CDS-Ecto-sp6_S_contig96:555552..555945Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 555553..555945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18663.1prot_Ecto-sp6_S_contig96.18663.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 555553..555945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18663.1

>prot_Ecto-sp6_S_contig96.18663.1 ID=prot_Ecto-sp6_S_contig96.18663.1|Name=mRNA_Ecto-sp6_S_contig96.18663.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=131bp
MLRFNTARFTKKHEDIVHSSSSSSSSSQNGALAASEPDFSIKRRGVAAPH
ANHDKLLHTLRSTVHNDRPLKNVECSLHNQRKPTDNPSTRHLASSPRPAG
VFLLLFSPATCRATFFSRPLHDRSVRSTLS*
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mRNA from alignment at Ecto-sp6_S_contig96:555514..556225+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18663.1 ID=mRNA_Ecto-sp6_S_contig96.18663.1|Name=mRNA_Ecto-sp6_S_contig96.18663.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=712bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:555514..556225+ (Ectocarpus species6 EcLAC_371)
AAGCACGAGACAGAAGAATCGCCAGGGTCACACAGAGTGATGTTACGCTT
CAACACAGCGAGGTTCACGAAGAAACACGAAGATATAGTACACAGCAGCA
GCAGCAGCAGCAGCAGCAGTCAAAATGGTGCCCTTGCGGCCTCTGAACCG
GATTTCAGCATCAAAAGGCGAGGCGTTGCTGCACCGCACGCAAATCACGA
CAAATTGCTCCATACACTGAGGTCTACTGTACACAACGACAGACCTCTGA
AAAACGTAGAGTGTTCACTTCACAACCAACGCAAACCGACCGACAACCCA
TCTACACGACACTTGGCAAGCAGCCCACGTCCGGCAGGGGTCTTCCTTCT
CCTCTTCAGCCCGGCGACCTGCCGTGCAACGTTCTTCTCACGGCCATTGC
ATGACCGGTCAGTCAGGTCAACCCTTTCTTGAGTTTCAGCGAACGCTTCG
TTCGTCCTTCTTGCTCTTCTTCCAGACCAACACAACGGCACCGAGAGCCA
AAGCGAGGAACACGATTGCCGAAAAGCTAACGCCTTGGTTGGGGCTCGTC
CCGTCGCCGTCCCTCCCACCGGCAAGCTCCTTCGGCGTTTGCGGCACAGC
CACCTCCGCCGCTTGCGGCACAACAAACTCGTCCTTCATCATTACCGGGG
GGGGCCTCAAGACATCGCCGTATTCTCCCCCAGGTTTTTCTTGCTGTTTT
TCTACTCGTGCG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:555514..556225+

>mRNA_Ecto-sp6_S_contig96.18663.1 ID=mRNA_Ecto-sp6_S_contig96.18663.1|Name=mRNA_Ecto-sp6_S_contig96.18663.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:555514..556225+ (Ectocarpus species6 EcLAC_371)
ATGTTACGCTTCAACACAGCGAGGTTCACGAAGAAACACGAAGATATAGT
ACACAGCAGCAGCAGCAGCAGCAGCAGCAGTCAAAATGGTGCCCTTGCGG
CCTCTGAACCGGATTTCAGCATCAAAAGGCGAGGCGTTGCTGCACCGCAC
GCAAATCACGACAAATTGCTCCATACACTGAGGTCTACTGTACACAACGA
CAGACCTCTGAAAAACGTAGAGTGTTCACTTCACAACCAACGCAAACCGA
CCGACAACCCATCTACACGACACTTGGCAAGCAGCCCACGTCCGGCAGGG
GTCTTCCTTCTCCTCTTCAGCCCGGCGACCTGCCGTGCAACGTTCTTCTC
ACGGCCATTGCATGACCGGTCAGTCAGGTCAACCCTTTCTTGA
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