mRNA_Ecto-sp6_S_contig96.18661.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18661.1
Unique NamemRNA_Ecto-sp6_S_contig96.18661.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig96.18661.1 vs. uniprot
Match: D7FJR5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJR5_ECTSI)

HSP 1 Score: 393 bits (1009), Expect = 1.920e-134
Identity = 216/223 (96.86%), Postives = 218/223 (97.76%), Query Frame = 3 
Query:   39 MGPFRALVGFFALMGANRVLSFVPGGQLNVARFSRSIDRLSWATTRCSGVRPLAASVPNGIGEGKRVGFASGSEDXXXXXXXGADGETKAKLQTVNARLLAQIEEQGKGIVIPTEESKKIKRKEEDLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGELDPSPE 707
            MG FRALVGF AL+GA RVLSFVPGGQLNVARFSRSID LSWATTRCSG RPLAASVPNG+GEGKRVGFASGSEDXXXXXXXGADGETKAKLQTVNARLLAQIEEQGKGIVIPTEESKKIKRKEEDLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGELDPSPE
Sbjct:    1 MGTFRALVGFLALIGAKRVLSFVPGGQLNVARFSRSIDGLSWATTRCSGARPLAASVPNGVGEGKRVGFASGSEDXXXXXXXGADGETKAKLQTVNARLLAQIEEQGKGIVIPTEESKKIKRKEEDLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGELDPSPE 223
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BLAST of mRNA_Ecto-sp6_S_contig96.18661.1 vs. uniprot
Match: A0A7S1UHH8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHH8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.330e-15
Identity = 52/127 (40.94%), Postives = 79/127 (62.20%), Query Frame = 3 
Query:  315 QTVNARLLAQIEEQGKGIVIPTEE-SKKIKRKEEDLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGEL 692
            +++NA+   +++E G  ++   EE + K +R E DLNG NP  A LGAG A  +S  +W+ T +   AY      ESD     R++  +KQ VVGL +L  G+FGV ALG+G++ A +AVG+++GEL
Sbjct:   31 ESINAQSGLEVDEDG--VLQNAEEVTGKFERVEVDLNGTNPLQAFLGAGLAGLLSTVAWRFTTFSIDAYAKATPTESDFYLTNRLSGVMKQVVVGLGSLATGVFGVIALGLGLLGARIAVGISRGEL 155
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BLAST of mRNA_Ecto-sp6_S_contig96.18661.1 vs. uniprot
Match: A0A7S4B5P2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B5P2_CHRCT)

HSP 1 Score: 69.7 bits (169), Expect = 6.900e-10
Identity = 48/128 (37.50%), Postives = 70/128 (54.69%), Query Frame = 3 
Query:  324 NARLLAQIEEQGKGIVIPTEESKKIKRKEEDLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGELDPSPE 707
            N  LLA+I+     ++ PT E    K    DLNG+ P   ++GA   A +   +W+ T+     +   PAEES    V R+T   +  VV + ALGAG+ G+ ++G   +A  VA+GV KGELDP+ E
Sbjct:  119 NEALLAEIQ----ALMPPTAEPAPEKMP-VDLNGIRPRDLVIGALSYAVVCVLAWQFTIAAGTYFAEHPAEESSFYVVNRLTGLARVVVVSMGALGAGVTGIASVGQAALAVQVAIGVMKGELDPTRE 241
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BLAST of mRNA_Ecto-sp6_S_contig96.18661.1 vs. uniprot
Match: A0A4D9CX59_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX59_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.080e-9
Identity = 64/173 (36.99%), Postives = 87/173 (50.29%), Query Frame = 3 
Query:  180 SGVRPLAASVPNGIGEGKRVGFASGSEDXXXXXXXGADGETKAKLQTVNARLLAQIEEQGKGIVI-PTEESKKIKRKEEDLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGELD 695
            SG RP+A   PN  G GK  G  S                T+AK  TVN RL+  I+ +  G+     EE+  +  ++ DLNG+NP   +  A  AA +SF  W+ T  LA A  +   + +D     R+      A VG+ ALGAG+ GVTA+G+  +AA V  GV  GELD
Sbjct:  139 SGPRPVA---PNSAG-GKGFGPTS--------------TPTRAKTGTVNKRLMNVIDAELDGVRDRQPEEATPLSEEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLD-TDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELD 292
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BLAST of mRNA_Ecto-sp6_S_contig96.18661.1 vs. uniprot
Match: A0A2V3IZV8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZV8_9FLOR)

HSP 1 Score: 59.7 bits (143), Expect = 1.860e-6
Identity = 44/131 (33.59%), Postives = 72/131 (54.96%), Query Frame = 3 
Query:  315 QTVNARLLAQIEEQGKGIVIPTEESKKIKRKEE--DLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGELDPS 701
            QT N R+L Q+ +  + + +         R     D++ VNPF  ++GA GAA +S+  W A  ++A  + S P ++  I  V R+++ ++  +V LFALG+GI GVT+LG+ ++    A G   GE   S
Sbjct:  138 QTPNKRVLQQVRDTMQRLGVEEHPQTPSPRPFSPIDISSVNPFSPLVGAFGAAFISYAVWSALGYIAFFFASHPLDD-QIYVVQRLSAVVRTGLVCLFALGSGISGVTSLGLFLLFGRTAYGTLSGEFRNS 267
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FJR5_ECTSI1.920e-13496.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1UHH8_9STRA3.330e-1540.94Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4B5P2_CHRCT6.900e-1037.50Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A4D9CX59_9STRA3.080e-936.99Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A2V3IZV8_9FLOR1.860e-633.59Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:548473..551702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score398.3
Seed ortholog evalue2.9e-108
Seed eggNOG ortholog2880.D7FJR5
Model size1092
Hectar predicted targeting categorysignal peptide
Exons6
EggNOG free text desc.Protein of unknown function (DUF3082)
EggNOG OGs2E92Q@1,2SFGP@2759
Ec32 ortholog descriptionProtein of unknown function DUF3082
Ec32 orthologEc-06_010480.1
Cds size813
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18661.1prot_Ecto-sp6_S_contig96.18661.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 548714..551664 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350592.8711994-UTR-Ecto-sp6_S_contig96:548472..5487131682350592.8711994-UTR-Ecto-sp6_S_contig96:548472..548713Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 548473..548713 -
1682350592.9715152-UTR-Ecto-sp6_S_contig96:551664..5517021682350592.9715152-UTR-Ecto-sp6_S_contig96:551664..551702Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 551665..551702 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350592.882741-CDS-Ecto-sp6_S_contig96:548713..5489801682350592.882741-CDS-Ecto-sp6_S_contig96:548713..548980Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 548714..548980 -
1682350592.9009383-CDS-Ecto-sp6_S_contig96:549553..5496461682350592.9009383-CDS-Ecto-sp6_S_contig96:549553..549646Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 549554..549646 -
1682350592.9251366-CDS-Ecto-sp6_S_contig96:550117..5502521682350592.9251366-CDS-Ecto-sp6_S_contig96:550117..550252Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 550118..550252 -
1682350592.9379802-CDS-Ecto-sp6_S_contig96:550706..5507961682350592.9379802-CDS-Ecto-sp6_S_contig96:550706..550796Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 550707..550796 -
1682350592.9487479-CDS-Ecto-sp6_S_contig96:551287..5514421682350592.9487479-CDS-Ecto-sp6_S_contig96:551287..551442Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 551288..551442 -
1682350592.9607062-CDS-Ecto-sp6_S_contig96:551591..5516641682350592.9607062-CDS-Ecto-sp6_S_contig96:551591..551664Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 551592..551664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18661.1

>prot_Ecto-sp6_S_contig96.18661.1 ID=prot_Ecto-sp6_S_contig96.18661.1|Name=mRNA_Ecto-sp6_S_contig96.18661.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=271bp
MGPFRALVGFFALMGANRVLSFVPGGQLNVARFSRSIDRLSWATTRCSGV
RPLAASVPNGIGEGKRVGFASGSEDEEEEEEEGADGETKAKLQTVNARLL
AQIEEQGKGIVIPTEESKKIKRKEEDLNGVNPFYAILGAGGAAAMSFGSW
KATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTAL
GMGVMAAIVAVGVAKGELDPSPEVRVVQWGTVARTRFSMERWKEFMLGLV
SPGRRSFVYFSAKTARFRRA*
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mRNA from alignment at Ecto-sp6_S_contig96:548473..551702-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18661.1 ID=mRNA_Ecto-sp6_S_contig96.18661.1|Name=mRNA_Ecto-sp6_S_contig96.18661.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3230bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:548473..551702- (Ectocarpus species6 EcLAC_371)
ACCACGCCTGCTATTGCCGTGCGTGGTGGCCGCTTAGGATGGGTCCCTTC
CGAGCCCTCGTTGGCTTCTTCGCCCTGATGGGAGCTAATAGGGTCCTTTC
GTTTGTACCAGGTAAATGATATCGTTGTGAAAGAAGGCTGCACAGGAGTT
GAAGTGCTACATGCGGCTCATGAACCAGCGGCAACAATGTACCAGTAGCT
GACCTGGGTTGCACTTGCTGTCACAGAGTAATGTTGGTCGCTGGCTTGTT
CCCGGTTCAGGTGGTCAACTCAACGTCGCGAGGTTTTCGAGGAGTATCGA
CCGGTTATCGTGGGCGACCACGCGATGTAGTGGTGTCAGACCACTCGCAG
CGAGTGTTCCCAACGGGATTGGAGAGGGCAAGCGCGTGGGGTTTGCCTCA
GGATCGGAGGACGAGGTGAGTGCCATGTGCTACGCAGGAACACGGGTACG
TGCAAGTTGAACCTCGACTTGTGTCATTGTACACCCTACGGCAGTAGCTG
CTTCCTAAGCTCGGAGCCTCTGCCGTCATATCGTGGAATTTCTTCTCGTA
AACCTTCGAATCTGTCTCGGTACCAGCCGACCCCTTTTGGAAGCATGTGT
ACTTCTCTACATTGTCTCTGAGTAGTCTAGTGCTGTCGGTCGTCCAGGCT
ACGGTGTGTGTCTAAGCACCGCATTGCCGCAGCACGGGAAGCTTCAGCAC
GTGACGGCACTCGGTACAATAGTGAAACATATCCTCGGGCAGCGGTGAGG
TGCCCGACTCATGCAAGCTCACGATGCAGCTGACATGGAACAACCGCTGC
TGTGGCATGGTGCCCAACCACGCACAAAACCCTTGTTGCCCCCACAATCG
CGTGTGCGTGGCGTGTGCGTGGCGGGTCGTTCGTTTGTGCTGCGATGCGG
GTGAAGGAGGAAGAGGAGGAGGAGGGGGCGGACGGAGAGACGAAAGCGAA
GCTGCAGACGGTGAATGCGCGCCTTCTTGCGCAGATCGAAGAACAGGTAA
GCGTACGACCCGATTTTCACCTGTGCCCGATGGCTAAGACCAGACATGCC
GCGTGGAATGGCGGTGACACCTCGGTATTCTGTACGAGGTGCATCACGAT
GAGTATTGCGGTGTAAAGTGTAGGCACATGCAGTTCTGGACATGACGGTG
TTTTATCTGGGATTCTCGCAGATTGGTGTGCAATCGACTGGTGTGCGTAT
GGAGACTTGTTGTTCGGTGAGAATCGTGGCAAAACCCTGCGGCAATCCGC
CCCTATTGAGAAGCCTTTCCCGCAATAGCCGGTGCCCAAACAACCACATT
CGTGCACAGATCACGCCAACACGCGCTGCCTTGGTGGCCCTAGCCCATTT
GCGTTTTATTTTTTACGGTCTACGCCACCATTGACCCTGCCGTTTGCGGG
AAATGCTGGCTGCTGTTGCGTTATGTCGAAACATGACTGCGGTCACGCAG
GGCAAAGGGATCGTCATCCCAACAGAGGAAAGCAAGAAGATTAAGCGAAA
AGAGGAGGACTTGAACGGAGTCAATCCGTTCTACGCGATTCTGGGTGCTG
GGGGCGCCGCGGCAATGTCTTTCGGGTCCTGGAAGGTGACTCAAGCGGAA
CGGCTGGCCCACAAATAACCCTGTTGTTCTACCAGAATGTTGACTGTTTC
ATAGCTGTCCGTGAGGCCAGGTTTCATGCCAAGGAAGGGCTTTGGAGAGG
AGCGGAGGTTATTCAGGGGCTACTGATGTAGAATCGAACGAACAGCATCT
AGGTTTCCCTTGTGCCGAGGTTGATAACGCTTTTTTTGCTCTTTCGGCAG
TTGTACGTTGGAGGTCGGAGACAACGGCAACAATACCGAACGCCGGTAAG
GGGTTACTTGCCACCTACCGAACGCCGGTAAGGGGTTACTTGCCACCTAC
GCAGTATGTCCGATATCGATGCAGCTTCTATGTCTTCCGTGTCGCTCGTT
TTTTTATGGGTCTTCGACACGGCACGCCACAACAACGTTAACTTTGATTT
TCACGGCCGTTGACTTTGCCGTTGCGTATGGCGCTTGTTGGCCAATGGCG
CCGCAGGCGACGCTCTGGCTAGCCCAGGCGTACTACAGCAAGCCCGCGGA
AGAGAGCGATATTCTAGCTGTGGCTCGCATGACATCGTTCATCAAACAGG
TCAGTGTCGTCCTTCAACTTACAAAGGTTGCTGCTTTTCCCTCCCTCTTT
CGGCAACCAACCTTTGGTAGTGTTCGCTTTGAACGAAAACAAGATGTGTA
CCAAGCAACGTGATACCTTTTTTCACGGCGCTGGTGATCCCCTCCTTTTC
CCAACCGATACAATGCCAGCTTCTTTGGGAACGCGGTGTTTGCACTGGCC
TACCTGAAACAATCCCTTCTTGAATTCCCCGAGTTTTGAACGATTGTGTT
TGAGGTCGTCACGGAAGCAACAAAGAGAACAAATGACGATTTCCCCAGGG
TCCATATTGGTGTGCATCATTGGTGTGCAACAACAATCGAAGCGCCGTCA
TGACCCAATGTTCCTGGGTTGATTGAGTGCACCGATGAGAGCGTTTAGCC
CTCCGACGTGTGCGATTTTTTTTTTTTTTTTTTGGCGATAGGTGGACGTC
GATTTTTCCAGCGTTGTGGGATTCTCATCGTGTATAGAAGCCACTCTCGT
CGTCGTCATCCCGACGTGCATGTAGGTTTTCAACACATCAATCCGACCGA
TTTGTACGCGTTTGTGACGCAGGCGGTGGTGGGGCTTTTCGCTCTTGGCG
CTGGCATCTTCGGCGTCACGGCTCTGGGGATGGGCGTAATGGCGGCGATT
GTTGCGGTGGGCGTGGCCAAGGGCGAGCTGGACCCTTCGCCAGAGGTTCG
TGTGGTCCAATGGGGTACAGTAGCACGAACGCGCTTTTCGATGGAGCGAT
GGAAGGAATTCATGCTAGGGCTGGTTTCGCCTGGGCGTCGTTCGTTCGTG
TACTTTAGTGCGAAGACGGCCCGGTTTCGACGCGCTTAGACGTCGTGTTC
CCTTCTGTTTGTGCTCTATTGGTGTATTCCATCGTGCCCAGAGTGCGGCA
CAGTCACTACTGTGACGCCTACAACTTGTCCATGGTCGTGTCCCTAACCA
CGCCCTGTGTTTGTAGAACCAGGCAACACTTTCAGCAACACGTTTAAAGT
TTTTTTACCATTTCGGAAAGCGTTGTGCCAAGGAGCCGTGTTCTCTCATG
ATTCGCGTATTTATGTGCGACGAGACAAGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:548473..551702-

>mRNA_Ecto-sp6_S_contig96.18661.1 ID=mRNA_Ecto-sp6_S_contig96.18661.1|Name=mRNA_Ecto-sp6_S_contig96.18661.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:548473..551702- (Ectocarpus species6 EcLAC_371)
ATGGGTCCCTTCCGAGCCCTCGTTGGCTTCTTCGCCCTGATGGGAGCTAA
TAGGGTCCTTTCGTTTGTACCAGGTGGTCAACTCAACGTCGCGAGGTTTT
CGAGGAGTATCGACCGGTTATCGTGGGCGACCACGCGATGTAGTGGTGTC
AGACCACTCGCAGCGAGTGTTCCCAACGGGATTGGAGAGGGCAAGCGCGT
GGGGTTTGCCTCAGGATCGGAGGACGAGGAGGAAGAGGAGGAGGAGGGGG
CGGACGGAGAGACGAAAGCGAAGCTGCAGACGGTGAATGCGCGCCTTCTT
GCGCAGATCGAAGAACAGGGCAAAGGGATCGTCATCCCAACAGAGGAAAG
CAAGAAGATTAAGCGAAAAGAGGAGGACTTGAACGGAGTCAATCCGTTCT
ACGCGATTCTGGGTGCTGGGGGCGCCGCGGCAATGTCTTTCGGGTCCTGG
AAGGCGACGCTCTGGCTAGCCCAGGCGTACTACAGCAAGCCCGCGGAAGA
GAGCGATATTCTAGCTGTGGCTCGCATGACATCGTTCATCAAACAGGCGG
TGGTGGGGCTTTTCGCTCTTGGCGCTGGCATCTTCGGCGTCACGGCTCTG
GGGATGGGCGTAATGGCGGCGATTGTTGCGGTGGGCGTGGCCAAGGGCGA
GCTGGACCCTTCGCCAGAGGTTCGTGTGGTCCAATGGGGTACAGTAGCAC
GAACGCGCTTTTCGATGGAGCGATGGAAGGAATTCATGCTAGGGCTGGTT
TCGCCTGGGCGTCGTTCGTTCGTGTACTTTAGTGCGAAGACGGCCCGGTT
TCGACGCGCTTAG
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