mRNA_Ecto-sp6_S_contig96.18657.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18657.1
Unique NamemRNA_Ecto-sp6_S_contig96.18657.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig96.18657.1 vs. uniprot
Match: D7FJR3_ECTSI (Mitochondrial inner membrane transporter, exports 2-oxoadipate and 2-oxoglutarate from the mitochond n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJR3_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 1.380e-73
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 
Query:    1 MIGAIKTSILSAPAGADKTTKRGYDFVAGMVGGTLATIANTPFDVVKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL 342
            MIGAIKTSILSAPAGADKTTKRGYDFVAGMVGGTLATIANTPFDVVKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL
Sbjct:    1 MIGAIKTSILSAPAGADKTTKRGYDFVAGMVGGTLATIANTPFDVVKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL 114
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BLAST of mRNA_Ecto-sp6_S_contig96.18657.1 vs. uniprot
Match: A0A6H5KHK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK4_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 2.770e-67
Identity = 108/114 (94.74%), Postives = 110/114 (96.49%), Query Frame = 1 
Query:    1 MIGAIKTSILSAPAGADKTTKRGYDFVAGMVGGTLATIANTPFDVVKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL 342
            MIGAIKTSIL APAG DK TKRGYDFV+GMVGGTLATIANTPFDVVKSRMQNQLKVEGQ+PKYKHTIPSLITVV EEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL
Sbjct:  192 MIGAIKTSILPAPAGVDKATKRGYDFVSGMVGGTLATIANTPFDVVKSRMQNQLKVEGQIPKYKHTIPSLITVVSEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL 305
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BLAST of mRNA_Ecto-sp6_S_contig96.18657.1 vs. uniprot
Match: A0A7S2WF09_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WF09_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.190e-29
Identity = 56/102 (54.90%), Postives = 76/102 (74.51%), Query Frame = 1 
Query:   37 PAGADKTTKRGYDFVAGMVGGTLATIANTPFDVVKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL 342
            PAG+ K  + GY F  G +G  + T+ NTPFDVVKSRMQ Q+ V G+  KY++++ ++  V  EEG AA+YKG+GPRLVRLGPGGGIM+V+F+ + +LL DL
Sbjct:  214 PAGSSKEQQLGYKFCTGSLGSCVGTLCNTPFDVVKSRMQLQVPVPGEGLKYRNSLQAISVVAREEGTAALYKGLGPRLVRLGPGGGIMIVAFDFVSNLLRDL 315
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BLAST of mRNA_Ecto-sp6_S_contig96.18657.1 vs. uniprot
Match: A0A642V6S6_9ASCO (Uncharacterized protein n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642V6S6_9ASCO)

HSP 1 Score: 115 bits (287), Expect = 3.690e-29
Identity = 52/102 (50.98%), Postives = 72/102 (70.59%), Query Frame = 1 
Query:   37 PAGADKTTKRGYDFVAGMVGGTLATIANTPFDVVKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL 342
            P    K+ K   D ++G +GGT+ T+ NTPFDVVKSR+QN  +V G +PKY  T+PS++TV  EEG AA+YKG  P+++RLGPGGGI+LV F  ++D    +
Sbjct:  167 PQAETKSKKMVNDLISGSIGGTVGTMLNTPFDVVKSRIQNTTRVPGVIPKYNWTVPSVVTVFREEGFAALYKGFLPKVLRLGPGGGILLVVFTGVMDFFRSI 268
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BLAST of mRNA_Ecto-sp6_S_contig96.18657.1 vs. uniprot
Match: A0A137NZE5_CONC2 (Mitochondrial 2-oxodicarboxylate transport protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137NZE5_CONC2)

HSP 1 Score: 115 bits (288), Expect = 4.500e-29
Identity = 61/112 (54.46%), Postives = 81/112 (72.32%), Query Frame = 1 
Query:    4 IGAIKTSILSAPAGADKTTKRGYDFVAGMVGGTLATIANTPFDVVKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLND 339
            IG IK S+L  P  + +TT  G +F+AG +GGT+ T+ANTPFDVVK+R+QNQ  + GQ  KYK TIPS I V  EEG  A+YKG  P+++RLGPGGGI+LV F+ + D + +
Sbjct:  187 IGHIK-SVLPKPKNSTETT--GINFIAGAIGGTIGTMANTPFDVVKTRIQNQ--IAGQPQKYKWTIPSTILVYKEEGFKALYKGFAPKVLRLGPGGGILLVVFDIVSDYMRE 293
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BLAST of mRNA_Ecto-sp6_S_contig96.18657.1 vs. uniprot
Match: A0A370U236_9HELO (Mitochondrial carrier n=1 Tax=Venustampulla echinocandica TaxID=2656787 RepID=A0A370U236_9HELO)

HSP 1 Score: 115 bits (288), Expect = 4.870e-29
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:   37 PAGADKTTKRGYDFVAGMVGGTLATIANTPFDVVKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL 342
            P   +KTT+ GYD ++G  GGT+ TI NTP DVVKSR+QN  K+ G VPKY    P++ TV+ EEG  A+YKG  P+++RLGPGGGI+LV F  ++D    +
Sbjct:  195 PKADNKTTQMGYDLISGATGGTVGTILNTPLDVVKSRIQNSPKIAGVVPKYNWAFPAIGTVMKEEGFGALYKGFIPKVLRLGPGGGILLVVFTGVMDFFRKM 296
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BLAST of mRNA_Ecto-sp6_S_contig96.18657.1 vs. uniprot
Match: U1GUP6_ENDPU (Mitochondrial thiamine pyrophosphate carrier 1 n=2 Tax=Endocarpon pusillum TaxID=364733 RepID=U1GUP6_ENDPU)

HSP 1 Score: 114 bits (286), Expect = 5.430e-29
Identity = 53/102 (51.96%), Postives = 72/102 (70.59%), Query Frame = 1 
Query:   22 SILSAPAGADKTTKRGYDFVAGMVGGTLATIANTPFDVVKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILD 327
            S++  PA  +K    G DF++G +GGT+ TI NTP DVVKSR+QN  K+ G VPKY    P L TV+ EEG AA+YKG  P+++RLGPGGG++LV +  ++D
Sbjct:  161 SLMPKPAPGNKAQAMGTDFMSGAIGGTVGTILNTPMDVVKSRIQNSPKIAGSVPKYNWAWPGLATVMREEGFAALYKGFLPKVLRLGPGGGVLLVVYTGVMD 262
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BLAST of mRNA_Ecto-sp6_S_contig96.18657.1 vs. uniprot
Match: S3CTK7_GLAL2 (Mitochondrial carrier n=2 Tax=Glarea lozoyensis TaxID=101852 RepID=S3CTK7_GLAL2)

HSP 1 Score: 115 bits (287), Expect = 6.850e-29
Identity = 53/97 (54.64%), Postives = 69/97 (71.13%), Query Frame = 1 
Query:   37 PAGADKTTKRGYDFVAGMVGGTLATIANTPFDVVKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILD 327
            P   +KTT+ GYD ++G  GGT  TI NTP DVVKSR+QN  +V GQ+PKY    P++ TV  EEG  A+YKG  P+++RLGPGGGI+LV F  ++D
Sbjct:  195 PKADNKTTQMGYDLISGATGGTFGTILNTPLDVVKSRIQNSPRVAGQIPKYNWAFPAVGTVFKEEGFGALYKGFIPKVLRLGPGGGILLVVFTGVMD 291
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BLAST of mRNA_Ecto-sp6_S_contig96.18657.1 vs. uniprot
Match: A0A084FUT7_PSEDA (Uncharacterized protein n=1 Tax=Pseudallescheria apiosperma TaxID=563466 RepID=A0A084FUT7_PSEDA)

HSP 1 Score: 114 bits (286), Expect = 1.000e-28
Identity = 52/97 (53.61%), Postives = 71/97 (73.20%), Query Frame = 1 
Query:   37 PAGADKTTKRGYDFVAGMVGGTLATIANTPFDVVKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILD 327
            P   DK+++   D ++G +GGT+ T+ NTP DVVKSR+QN +KV GQVPKY    P+L TV  EEG+ A+YKG  P+++RLGPGGGI+LV F  ++D
Sbjct:  195 PQATDKSSQIRNDLISGAIGGTVGTMINTPMDVVKSRIQNTVKVPGQVPKYNWAWPALFTVAREEGIGALYKGFAPKVLRLGPGGGILLVVFTGVMD 291
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BLAST of mRNA_Ecto-sp6_S_contig96.18657.1 vs. uniprot
Match: W7IGP9_9PEZI (Putative mitochondrial 2-oxodicarboxylate carrier n=1 Tax=Drechslerella stenobrocha 248 TaxID=1043628 RepID=W7IGP9_9PEZI)

HSP 1 Score: 114 bits (286), Expect = 1.170e-28
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:   37 PAGADKTTKRGYDFVAGMVGGTLATIANTPFDVVKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLND 339
            P    K ++   D +AG VGGT  TI NTPFDVVKSR+QN ++V+GQVPKY  TIP++ TV  EEG AA+YKG  P+++RLGPGGGI+LV +  +++   +
Sbjct:  196 PKAETKQSQMVNDVIAGAVGGTAGTILNTPFDVVKSRIQNTVRVKGQVPKYNWTIPAVATVAREEGFAALYKGFLPKVLRLGPGGGILLVVYTGVIEFFEN 296
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJR3_ECTSI1.380e-73100.00Mitochondrial inner membrane transporter, exports ... [more]
A0A6H5KHK4_9PHAE2.770e-6794.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2WF09_9STRA1.190e-2954.90Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A642V6S6_9ASCO3.690e-2950.98Uncharacterized protein n=1 Tax=Trichomonascus cif... [more]
A0A137NZE5_CONC24.500e-2954.46Mitochondrial 2-oxodicarboxylate transport protein... [more]
A0A370U236_9HELO4.870e-2951.96Mitochondrial carrier n=1 Tax=Venustampulla echino... [more]
U1GUP6_ENDPU5.430e-2951.96Mitochondrial thiamine pyrophosphate carrier 1 n=2... [more]
S3CTK7_GLAL26.850e-2954.64Mitochondrial carrier n=2 Tax=Glarea lozoyensis Ta... [more]
A0A084FUT7_PSEDA1.000e-2853.61Uncharacterized protein n=1 Tax=Pseudallescheria a... [more]
W7IGP9_9PEZI1.170e-2853.47Putative mitochondrial 2-oxodicarboxylate carrier ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:530365..531601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score226.5
Seed ortholog evalue6.4e-57
Seed eggNOG ortholog2880.D7FJR3
Preferred nameSLC25A21
Model size345
KEGG koko:K15110
KEGG TC2.A.29.2.4,2.A.29.2.5,2.A.29.2.8
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006082,GO:0006520,GO:0006553,GO:0006554,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006839,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009056,GO:0009063,GO:0009066,GO:0009068,GO:0009987,GO:0015075,GO:0015139,GO:0015318,GO:0015711,GO:0015742,GO:0015849,GO:0016020,GO:0016021,GO:0016054,GO:0019752,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046942,GO:0046943,GO:0051179,GO:0051181,GO:0051184,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0098656,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1903825,GO:1905039,GO:1990542,GO:1990550,GO:1990551
Exons3
EggNOG free text desc.alpha-ketoglutarate transmembrane transporter activity
EggNOG OGsKOG0754@1,KOG0754@2759
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-06_010510.1
Cds size345
COG Functional cat.U
BiGG ReactioniMM904.YPL134C,iND750.YPL134C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350592.6699293-CDS-Ecto-sp6_S_contig96:530364..5304991682350592.6699293-CDS-Ecto-sp6_S_contig96:530364..530499Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 530365..530499 +
1682350592.6982312-CDS-Ecto-sp6_S_contig96:530874..5309901682350592.6982312-CDS-Ecto-sp6_S_contig96:530874..530990Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 530875..530990 +
1682350592.7111816-CDS-Ecto-sp6_S_contig96:531507..5316011682350592.7111816-CDS-Ecto-sp6_S_contig96:531507..531601Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 531508..531601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18657.1prot_Ecto-sp6_S_contig96.18657.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 530365..531601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18657.1

>prot_Ecto-sp6_S_contig96.18657.1 ID=prot_Ecto-sp6_S_contig96.18657.1|Name=mRNA_Ecto-sp6_S_contig96.18657.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=115bp
MIGAIKTSILSAPAGADKTTKRGYDFVAGMVGGTLATIANTPFDVVKSRM
QNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIM
LVSFNAILDLLNDL*
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mRNA from alignment at Ecto-sp6_S_contig96:530365..531601+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18657.1 ID=mRNA_Ecto-sp6_S_contig96.18657.1|Name=mRNA_Ecto-sp6_S_contig96.18657.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1237bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:530365..531601+ (Ectocarpus species6 EcLAC_371)
ATGATCGGCGCCATCAAGACATCTATCCTGTCTGCACCGGCGGGTGCCGA
CAAGACCACCAAGAGGGGCTACGATTTCGTGGCGGGGATGGTGGGAGGCA
CGCTGGCGACGATAGCCAACACGCCGTTTGACGTGGTGAGTGGAAGCAAG
CGTCTGTAGCTTAAGACAAGAGCGTCTTGCAGCTTAAGACAAGAACGGCT
GTATTTTACAACGAAAACATCTGTAGCTTAAGACAAGCGCGTCTGTAGTT
TAAGAAGACAAGAGCGCCTAACGTCTGTAGCTTAAGACAAGAACATCTTT
AGCTTACGAGAAGGTCGTCTATAGCGAAGACAAGAAGGCATGGAAGCTGT
GGAAGTGGTCCATTGTCGCAGCCGTAGATACGAGACGCAAAGGCGAGAAA
AGTCAAAAGATTTTGTTAAGTATCTGCGGTGTTCGTCAGGCAAGATTTTG
TTTTCTGCTCCCTCTTGCTATGTTCGCCGCTGAATTGTGTCGCCTTGATT
GGCTTTTCAGGTGAAGTCGCGAATGCAGAACCAGCTCAAGGTGGAGGGCC
AAGTTCCCAAGTACAAGCATACGATCCCGTCCCTCATCACAGTCGTAGGG
GAGGAGGGATTGGCAGCCGTGTACAAGTGAGGATTCTGGTGTTTTTCTGG
ATCCATGAGCTTTGGAAGCGTAACCCATGGACACGCACACATGACGTGGT
TGTTGCTGTTGTTGTTGTGTTTTAATCCGTGCTGTTGCGTTCACATTAAT
ACCCGTTTCGGTCTCTGCTCAGTACCTTTTTAACATCCGTGTACAACCAG
TCGAATTGAAGCGAATGCATTCCGTCGTCACAGACCAACTACCCGCAACT
ATTTTAGTAGTTTCGTGTTTTTGTTTTGTTGGGGGTGTTTTTAGCTGGTG
GGAAAGACATGTTTGTTGTGTGCACGTCCCATTCGTTTCCGTGTCCGTCT
TTCTCGCACGTACCGACACGCCGTGCATTTTGCCTCGCTGCTGTCGCTCG
CGCGCGCCCGCACACATGTGAGCCGCTTTCAGATGCATCTCTTGTTGCAT
TGCTGCACATCTCGTGGCAGCGCTTCACACGCCCACCATCCATCTCCGTC
TCGATTGTTTTGTTTGCGTACCGTTCGTTGATCGGATCGACAGGGGCATC
GGCCCACGGCTCGTCCGGCTGGGCCCCGGCGGCGGAATCATGCTCGTTTC
CTTCAATGCCATCTTGGACCTACTCAACGACTTATGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:530365..531601+

>mRNA_Ecto-sp6_S_contig96.18657.1 ID=mRNA_Ecto-sp6_S_contig96.18657.1|Name=mRNA_Ecto-sp6_S_contig96.18657.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:530365..531601+ (Ectocarpus species6 EcLAC_371)
ATGATCGGCGCCATCAAGACATCTATCCTGTCTGCACCGGCGGGTGCCGA
CAAGACCACCAAGAGGGGCTACGATTTCGTGGCGGGGATGGTGGGAGGCA
CGCTGGCGACGATAGCCAACACGCCGTTTGACGTGGTGAAGTCGCGAATG
CAGAACCAGCTCAAGGTGGAGGGCCAAGTTCCCAAGTACAAGCATACGAT
CCCGTCCCTCATCACAGTCGTAGGGGAGGAGGGATTGGCAGCCGTGTACA
AGGGCATCGGCCCACGGCTCGTCCGGCTGGGCCCCGGCGGCGGAATCATG
CTCGTTTCCTTCAATGCCATCTTGGACCTACTCAACGACTTATGA
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