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Homology
BLAST of mRNA_Ecto-sp6_S_contig96.18645.1 vs. uniprot
Match: D7FJQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ2_ECTSI) HSP 1 Score: 885 bits (2287), Expect = 0.000e+0 Identity = 460/477 (96.44%), Postives = 464/477 (97.27%), Query Frame = 3
Query: 492 MKDASDGIDNFKQLSGREKTSKTVEQELALAAAAARRLSLHVNAWTTAELLQELERIWLQAVRAEATIDPQFQHVVTEWEAACAALSRLSRTAQEDSIAGQAERHASATRIRDCQIRAGVGSKAEKAGWWKQRQMRFLREELRHIERKVAPLADPSRLAARYNLLLAKCAEVGGWATAVSAYRSARARGVITKPLRNRRDADGSFSLEPLVYQHLLRAAKNATPPQPRAALLVLREMRLRGEEPAATHYNLVVSACARAAAVAASTSALIPLDRDDTEGHAVLCEDRLYQGIGGADGHKKEGNCGAIHLESDSSGGVVATEKETSKPAKLCSGHEESVEENMQLKGTAFGAKVDVEDLPDRCCLLSTAGDAVECRGAEAAGETWRLALDVIAGMRKRGVTPTLVTFKTLVECCRCAAAASVLNIGGGEGLGKGSTPAEVYTALKEAGIPARFCYQAGLGNALKGGRCFPGYVAEISR 1922
MKDASDGIDNFKQLSGREKTSK VEQELALAAAAARRLSLHVNAWTTAELLQELERIWLQAVRAEATID QF+HVVTEWEAACAALSRLSRTAQEDSIAGQAERHASATRIRDCQIRAGVGSKAEKAGWWKQRQMRFLREELRHIERKVAPLADPS LAARYNLLL +CAEVGGWATAVSAYRSARARGVITKPL NRRDA GSFSLEPLVYQHLLRAAKNATPPQPRAALLVLREMRLRGEEPAATHYNLVVSACARAAAVAASTSAL+PLDRDDTEGHAVLCEDRLYQGIGGADGHKKEGNCGAIHLESDSSGGVVATE ET KPAKLCSGHEE VEENM+LKGTAFGAKVDVEDLPDRCCLL TAGDAVECRGAEAAGETWRLALDVIA MRKRGVTPTLVTFKTLVECCRCAAAASVLNIGGGEGLGKGSTPAEVYTALKEAGIPARFCYQAGL NAL GGRCFPGYVAEISR
Sbjct: 1 MKDASDGIDNFKQLSGREKTSKAVEQELALAAAAARRLSLHVNAWTTAELLQELERIWLQAVRAEATIDSQFRHVVTEWEAACAALSRLSRTAQEDSIAGQAERHASATRIRDCQIRAGVGSKAEKAGWWKQRQMRFLREELRHIERKVAPLADPSHLAARYNLLLVRCAEVGGWATAVSAYRSARARGVITKPLSNRRDAVGSFSLEPLVYQHLLRAAKNATPPQPRAALLVLREMRLRGEEPAATHYNLVVSACARAAAVAASTSALMPLDRDDTEGHAVLCEDRLYQGIGGADGHKKEGNCGAIHLESDSSGGVVATENETPKPAKLCSGHEEGVEENMRLKGTAFGAKVDVEDLPDRCCLLPTAGDAVECRGAEAAGETWRLALDVIADMRKRGVTPTLVTFKTLVECCRCAAAASVLNIGGGEGLGKGSTPAEVYTALKEAGIPARFCYQAGLRNALNGGRCFPGYVAEISR 477
BLAST of mRNA_Ecto-sp6_S_contig96.18645.1 vs. uniprot
Match: A0A6H5L7G8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G8_9PHAE) HSP 1 Score: 818 bits (2114), Expect = 1.450e-294 Identity = 428/477 (89.73%), Postives = 447/477 (93.71%), Query Frame = 3
Query: 492 MKDASDGIDNFKQLSGREKTSKTVEQELALAAAAARRLSLHVNAWTTAELLQELERIWLQAVRAEATIDPQFQHVVTEWEAACAALSRLSRTAQEDSIAGQAERHASATRIRDCQIRAGVGSKAEKAGWWKQRQMRFLREELRHIERKVAPLADPSRLAARYNLLLAKCAEVGGWATAVSAYRSARARGVITKPLRNRRDADGSFSLEPLVYQHLLRAAKNATPPQPRAALLVLREMRLRGEEPAATHYNLVVSACARAAAVAASTSALIPLDRDDTEGHAVLCEDRLYQGIGGADGHKKEGNCGAIHLESDSSGGVVATEKETSKPAKLCSGHEESVEENMQLKGTAFGAKVDVEDLPDRCCLLSTAGDAVECRGAEAAGETWRLALDVIAGMRKRGVTPTLVTFKTLVECCRCAAAASVLNIGGGEGLGKGSTPAEVYTALKEAGIPARFCYQAGLGNALKGGRCFPGYVAEISR 1922
MKD SDGIDNFKQL GREKTSKTVEQELALAAAAARRLSLHVNAWTTAELLQELERIWLQAVRAEATIDPQFQHVVTEWE ACAALSRLSRTAQEDS+ GQAERHASATRIRDC+IRAGVGSKA+K GWWKQRQMRFLREELRHIERKVAPLADPSRL ARYNLLLA+CAEVGGWA AVSAY+SARARGVITKP+ NRRDA+ SFSL+PLVYQHLLRAAKNATPPQPRAAL VLREMRLRGEEP ATHYNLVVSACARAAAVAASTSAL+PLDRD TEGHAVL EDRL Q IGGADGHKKEG CGAIHLESDSSGGVVATE ET KPAKL SGH+ V +NM+LK TAFGAKVDVED+PDRCCLL TAGDA++CRGAEAAG++WRLALDVIA MR GVTPTLVTFKTLVECCRCAAAASVLNIGGGEGLGKGSTPAEVY+ALKEAGIP RFCYQAGLGNA+KG RCFP YVAEISR
Sbjct: 1 MKDVSDGIDNFKQLPGREKTSKTVEQELALAAAAARRLSLHVNAWTTAELLQELERIWLQAVRAEATIDPQFQHVVTEWETACAALSRLSRTAQEDSVTGQAERHASATRIRDCRIRAGVGSKAKKTGWWKQRQMRFLREELRHIERKVAPLADPSRLVARYNLLLARCAEVGGWAIAVSAYQSARARGVITKPMNNRRDANPSFSLKPLVYQHLLRAAKNATPPQPRAALHVLREMRLRGEEPVATHYNLVVSACARAAAVAASTSALMPLDRDGTEGHAVLREDRLCQDIGGADGHKKEGFCGAIHLESDSSGGVVATENETPKPAKLGSGHK-CVAKNMRLKQTAFGAKVDVEDVPDRCCLLPTAGDAMQCRGAEAAGDSWRLALDVIADMRMSGVTPTLVTFKTLVECCRCAAAASVLNIGGGEGLGKGSTPAEVYSALKEAGIPTRFCYQAGLGNAVKGRRCFPAYVAEISR 476
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1925 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-06_010630.3 |
| Cds size | 1434 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682350591.4589558-CDS-Ecto-sp6_S_contig96:443867..444819 | 1682350591.4589558-CDS-Ecto-sp6_S_contig96:443867..444819 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig96 443868..444819 - |
| 1682350591.4703286-CDS-Ecto-sp6_S_contig96:445026..445508 | 1682350591.4703286-CDS-Ecto-sp6_S_contig96:445026..445508 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig96 445027..445508 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682350591.4806628-UTR-Ecto-sp6_S_contig96:445508..445536 | 1682350591.4806628-UTR-Ecto-sp6_S_contig96:445508..445536 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig96 445509..445536 - |
| 1682350591.4917662-UTR-Ecto-sp6_S_contig96:445881..446075 | 1682350591.4917662-UTR-Ecto-sp6_S_contig96:445881..446075 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig96 445882..446075 - |
| 1682350591.5107853-UTR-Ecto-sp6_S_contig96:447515..447784 | 1682350591.5107853-UTR-Ecto-sp6_S_contig96:447515..447784 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig96 447516..447784 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig96.18645.1 >prot_Ecto-sp6_S_contig96.18645.1 ID=prot_Ecto-sp6_S_contig96.18645.1|Name=mRNA_Ecto-sp6_S_contig96.18645.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=478bp
MKDASDGIDNFKQLSGREKTSKTVEQELALAAAAARRLSLHVNAWTTAEL LQELERIWLQAVRAEATIDPQFQHVVTEWEAACAALSRLSRTAQEDSIAG QAERHASATRIRDCQIRAGVGSKAEKAGWWKQRQMRFLREELRHIERKVA PLADPSRLAARYNLLLAKCAEVGGWATAVSAYRSARARGVITKPLRNRRD ADGSFSLEPLVYQHLLRAAKNATPPQPRAALLVLREMRLRGEEPAATHYN LVVSACARAAAVAASTSALIPLDRDDTEGHAVLCEDRLYQGIGGADGHKK EGNCGAIHLESDSSGGVVATEKETSKPAKLCSGHEESVEENMQLKGTAFG AKVDVEDLPDRCCLLSTAGDAVECRGAEAAGETWRLALDVIAGMRKRGVT PTLVTFKTLVECCRCAAAASVLNIGGGEGLGKGSTPAEVYTALKEAGIPA RFCYQAGLGNALKGGRCFPGYVAEISR* back to topmRNA from alignment at Ecto-sp6_S_contig96:443868..447784- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig96.18645.1 ID=mRNA_Ecto-sp6_S_contig96.18645.1|Name=mRNA_Ecto-sp6_S_contig96.18645.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3917bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:443868..447784- (Ectocarpus species6 EcLAC_371) ATGTTTCTTCGTGCGTTTGACATCGCTAGGGACGACGTTCGTCCTATCCT
CGATGCAGCTCTCACAAACCTCTCTACCCTCCTATTTTGTACTTCGCTAG
CAACGGAAGTCGACTTAACATTTGATTGCATGGCCAGATAACCCGGAAGG
AGGTGGAAGTGGACGATGTGGTAACACACGCACGGCAAGGAAGCGACCGA
CGAGTCCTAGCGACCCGCGGAAGATGCGCAGCTGAAAATGAACTAGAGGA
GGCACTACTCGAGCTCACGGTAATAAATTACGAGGGTGCGGATACATAAA
TGTATTTTGTAGGTATGCATACAAGTCTAGATAGTTTTGTGGCCACTCGT
GTGGCGCTGAGGCGACATGTAGCGGGCGCCTCTAATCGCAGCAGCAGCAG
CGCTGCCCTCTTCTTCCGCATAAGACATTTCCACTGCCCGGTGTGGTACG
ACCCAGCGCCAACCCCAAGCCCGGGGTGGGCGAGATGCACCTACGGTCGC
CAACCCCAAGCCCGGGGGGGCGAGATGCACCTACGGTGGCCGGCCAAGTA
CGTGTGCCCTCCCTAACGCCTCTACTGCTGTCCTCCCTTGGAGGGCGGGG
TGCCCAGAGAATTCCCCAACCAACCGGTGGTCAACTTTCGAACGAGCTAC
GGCGGTCAACGGGCCGCCGCGAGGTCGCGGAGATGTCGCCAAGCCGCGTA
CAGGACCACGTAGGAGAACTCAGTAGCCGAGGTGGATGCGTTCGCTGCTT
ATGACGCTGCTGTTCGGCGATGCTAGTAGAGGAATGTGTCTGTGTCCCGA
CATGAGGGGGAAGCGTCAATCCTTTCGCGCGCTTTCGTGTTTTGACGCGA
TTCTGAAAAAAAAGCACCACCAAAAATCGACCTCAAAAAGGCGGCGGAAT
TACGTTCATGCCGAAATTCCACGAGACGTCAATATTTCACGTCATAAACC
GCTTCACGTCGAAATTCGAACGCCATGTGGATTCCTTCTACACTATTCGA
GTTAAGCACGACGTCCGACTCAAAGAGCCCCGCCCTTCAATCCTCTTGAC
AGAACCATGTAAGGTCCATACATACTGTGTAGATCTCTGCACTTTGGGGT
GCGTGGAGATGGCCGTGGCGGGAAAACACCTAGACAATACGTGCTCCATC
CATGAAGAAGAAGAGTTTTGAAAGAAAAAACACAAATAATTGTAGGATCC
CGGGTACCATATGAATCGAGTTGAGGGCTACCCGCGAGTGCTTTGTAGGT
TCGTCCTTCCATGTGACAAACAGTCAAAGCCATTTACGACCATATATTGT
TGCCCTTATGGTAGATGTCAGTTTTACGCCTTTCGGTATGTTTCGGGCGC
ACCAGCGGGGGTCACAATGGAGGTTTGTTGACTTCTGGCTTCTCCACGTT
CGTGCCGCGGTACTTGCACATATTTTTCGCGAGAAGGATTCAGCCATCCG
GTTCTGTCCTTGATCGTGATGGTCGATTCTTGTGTACACAGGGCCTCTAG
GCGTTATCCATTTATTTGCTTAGGCAGGAAGTGGCAAGAATCTCGCTTCG
TGAAACCTCGGCAAAACTACGTACAACGCCAGAAGATTGTGGGGTTGCCC
GTGATCCAACCGTGACGACGTGAGGTTCTCATGCTTCAGAAACAAAGTTG
GTGGAGTCGATACCCATGCAAATGACTGACGCACCCGGGTTCGCGCACAA
CAAAGGCAGGCCCTCCAGGAGCGGGGCCGTGCTTCAGTTGAGCTCTCGTC
AAAGGCTAGCCCTTTGCTGAAGCAGGACATCAGCACCAAACGGCTGGACC
TCCTCGCCGCCAGCCCGCCCTTTATTCTCAAGCTGGAGCACGCTTTGGTT
ACCGTCGCAAAGGCGGATCAAGCAGGTCCGGAACCGCGAGCACACACGAC
AAGGTTCGCTGTTGTGGTAGCATATCGTTTTCTTCGGCACTTTCGCCAGC
TTTCGATCACGGATCCTCGTGCGCGTTGCGGCAACCAACCCCCACCAGGT
CGATCAAGGGGCTCGTCCTCCAACTCCTTTGTAGCACATAGTCATATGCA
TGGGTCAGAGATTACAACCGTCTAAGCCAGTAACAACAGCACGTCCAAAA
GTCATGCTGAAACAGTTCCCAGGTCTTAAAAGTCAAAGGCGAGCAAGCAC
TTTGATTAGCGACGCGGAAAGCCTGATGACACTGAAGAGCTTGTCTTCGG
TCGAGGAATCATGGCATGAATCGTCGCATTCAATTATCGTTCGTACAGCA
GGTGGAGGTCTACCTTGAAGAGCCTCATGAAGGACGCCTCAGACGGCATC
GACAACTTCAAGCAGCTTTCCGGCCGCGAAAAAACGAGCAAGACGGTCGA
GCAGGAACTCGCACTAGCTGCGGCTGCGGCCCGGCGTCTATCCCTGCACG
TTAACGCCTGGACCACGGCCGAACTCTTGCAAGAACTCGAGCGCATATGG
CTCCAAGCTGTTCGAGCGGAGGCGACAATAGACCCACAGTTTCAACACGT
TGTCACGGAATGGGAAGCTGCCTGCGCCGCTCTCTCCCGGTTGTCTCGGA
CAGCTCAAGAAGATTCGATCGCCGGACAGGCAGAGCGGCATGCCTCTGCA
ACTAGAATCCGCGACTGCCAAATTCGAGCGGGTGTCGGATCAAAGGCTGA
GAAGGCCGGGTGGTGGAAGCAACGACAGATGCGTTTTCTACGGGAAGAGC
TGAGGCACATTGAGCGCAAGGTTGCTCCATTGGCCGATCCGTCCCGCTTA
GCGGCTAGGTCAGTGTTTTGAGATCGATCAAGATGGGGGACCGAAATATG
AAGAGCGGGGGCGTGGTACATGCAGAAATAACCGACGAGTTGTACCTTTC
CTGCCAAGATATGGTCGCGAGCATATCCCTGAAGCATTGGTAGCGTCTAT
CATAAGGTATGCACCCCCCGAAGCACCTCCTGCCGCCCTCCCTGCCCGTC
ACCCTTTCTATGCAGATACAATCTCCTGCTAGCAAAATGCGCAGAGGTGG
GGGGGTGGGCAACAGCCGTTTCCGCCTACCGATCAGCAAGAGCCCGAGGC
GTCATCACCAAACCTTTGAGAAATAGGCGAGACGCGGATGGTTCGTTCTC
GCTGGAACCTTTGGTCTACCAACACCTTCTCCGCGCGGCCAAAAATGCGA
CACCCCCCCAACCTCGCGCGGCTCTGCTCGTGCTGCGAGAAATGAGGCTC
AGAGGCGAAGAGCCTGCGGCCACGCACTACAACCTCGTTGTCAGCGCATG
TGCTCGGGCTGCCGCCGTCGCGGCATCCACCTCGGCCCTGATACCGTTAG
ATCGTGATGACACTGAGGGCCACGCGGTCCTTTGCGAAGACCGCTTATAC
CAGGGTATCGGGGGCGCTGACGGACATAAGAAGGAAGGAAATTGTGGTGC
TATTCACCTAGAAAGTGACAGCAGCGGTGGGGTCGTGGCCACGGAGAAAG
AAACGTCCAAGCCCGCAAAACTTTGCAGCGGTCATGAAGAGAGTGTAGAA
GAAAATATGCAGTTGAAAGGGACCGCCTTTGGCGCCAAAGTTGATGTCGA
AGACCTCCCAGACCGCTGTTGCTTACTGTCAACGGCAGGCGATGCCGTGG
AGTGTCGAGGGGCTGAAGCTGCCGGAGAGACCTGGCGGCTAGCCTTGGAC
GTGATCGCAGGCATGCGCAAGAGGGGAGTCACGCCGACGCTTGTGACGTT
CAAGACACTGGTAGAGTGTTGCCGCTGTGCTGCAGCAGCGTCTGTGCTTA
ACATAGGCGGGGGTGAGGGGTTGGGGAAGGGTTCTACCCCAGCAGAGGTG
TACACTGCGTTGAAAGAGGCTGGGATTCCGGCACGGTTCTGCTATCAGGC
CGGGTTGGGGAACGCATTGAAGGGAGGAAGATGCTTCCCAGGGTATGTCG
CTGAAATCAGTAGATGA back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig96:443868..447784- >mRNA_Ecto-sp6_S_contig96.18645.1 ID=mRNA_Ecto-sp6_S_contig96.18645.1|Name=mRNA_Ecto-sp6_S_contig96.18645.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1434bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:443868..447784- (Ectocarpus species6 EcLAC_371) ATGAAGGACGCCTCAGACGGCATCGACAACTTCAAGCAGCTTTCCGGCCG CGAAAAAACGAGCAAGACGGTCGAGCAGGAACTCGCACTAGCTGCGGCTG CGGCCCGGCGTCTATCCCTGCACGTTAACGCCTGGACCACGGCCGAACTC TTGCAAGAACTCGAGCGCATATGGCTCCAAGCTGTTCGAGCGGAGGCGAC AATAGACCCACAGTTTCAACACGTTGTCACGGAATGGGAAGCTGCCTGCG CCGCTCTCTCCCGGTTGTCTCGGACAGCTCAAGAAGATTCGATCGCCGGA CAGGCAGAGCGGCATGCCTCTGCAACTAGAATCCGCGACTGCCAAATTCG AGCGGGTGTCGGATCAAAGGCTGAGAAGGCCGGGTGGTGGAAGCAACGAC AGATGCGTTTTCTACGGGAAGAGCTGAGGCACATTGAGCGCAAGGTTGCT CCATTGGCCGATCCGTCCCGCTTAGCGGCTAGATACAATCTCCTGCTAGC AAAATGCGCAGAGGTGGGGGGGTGGGCAACAGCCGTTTCCGCCTACCGAT CAGCAAGAGCCCGAGGCGTCATCACCAAACCTTTGAGAAATAGGCGAGAC GCGGATGGTTCGTTCTCGCTGGAACCTTTGGTCTACCAACACCTTCTCCG CGCGGCCAAAAATGCGACACCCCCCCAACCTCGCGCGGCTCTGCTCGTGC TGCGAGAAATGAGGCTCAGAGGCGAAGAGCCTGCGGCCACGCACTACAAC CTCGTTGTCAGCGCATGTGCTCGGGCTGCCGCCGTCGCGGCATCCACCTC GGCCCTGATACCGTTAGATCGTGATGACACTGAGGGCCACGCGGTCCTTT GCGAAGACCGCTTATACCAGGGTATCGGGGGCGCTGACGGACATAAGAAG GAAGGAAATTGTGGTGCTATTCACCTAGAAAGTGACAGCAGCGGTGGGGT CGTGGCCACGGAGAAAGAAACGTCCAAGCCCGCAAAACTTTGCAGCGGTC ATGAAGAGAGTGTAGAAGAAAATATGCAGTTGAAAGGGACCGCCTTTGGC GCCAAAGTTGATGTCGAAGACCTCCCAGACCGCTGTTGCTTACTGTCAAC GGCAGGCGATGCCGTGGAGTGTCGAGGGGCTGAAGCTGCCGGAGAGACCT GGCGGCTAGCCTTGGACGTGATCGCAGGCATGCGCAAGAGGGGAGTCACG CCGACGCTTGTGACGTTCAAGACACTGGTAGAGTGTTGCCGCTGTGCTGC AGCAGCGTCTGTGCTTAACATAGGCGGGGGTGAGGGGTTGGGGAAGGGTT CTACCCCAGCAGAGGTGTACACTGCGTTGAAAGAGGCTGGGATTCCGGCA CGGTTCTGCTATCAGGCCGGGTTGGGGAACGCATTGAAGGGAGGAAGATG CTTCCCAGGGTATGTCGCTGAAATCAGTAGATGA back to top
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