mRNA_Ecto-sp6_S_contig96.18644.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18644.1
Unique NamemRNA_Ecto-sp6_S_contig96.18644.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig96.18644.1 vs. uniprot
Match: D7FJQ1_ECTSI (IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ1_ECTSI)

HSP 1 Score: 442 bits (1136), Expect = 1.470e-156
Identity = 224/232 (96.55%), Postives = 224/232 (96.55%), Query Frame = 1
Query:    1 MPRADTILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAEIEGGLP 696
            M RADTILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETK     EGRLFALQNGLDYFETSAAGAKGIDAPFHHMAT FHETYEKTIEGAE EGGLP
Sbjct:    1 MSRADTILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETK-----EGRLFALQNGLDYFETSAAGAKGIDAPFHHMATSFHETYEKTIEGAEGEGGLP 227          
BLAST of mRNA_Ecto-sp6_S_contig96.18644.1 vs. uniprot
Match: A0A6H5KZL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL0_9PHAE)

HSP 1 Score: 338 bits (866), Expect = 1.470e-115
Identity = 170/175 (97.14%), Postives = 172/175 (98.29%), Query Frame = 1
Query:    1 MPRADTILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKA 525
            M RADTILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALP+ SAPLPGVVIANKSDLREGGINARAVV T+A
Sbjct:    1 MSRADTILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSKSAPLPGVVIANKSDLREGGINARAVVGTEA 175          
BLAST of mRNA_Ecto-sp6_S_contig96.18644.1 vs. uniprot
Match: A0A7S2XVJ0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ0_9STRA)

HSP 1 Score: 256 bits (654), Expect = 4.270e-83
Identity = 123/214 (57.48%), Postives = 164/214 (76.64%), Query Frame = 1
Query:   49 QSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAEIEGG 690
            +S +RSM++ H+  LMLR KVV+VGDACVGK+++VQMF  GG  YPKNY+MT GV F VKQV +P+T+C VEL+LFDC GQ +FN+ EQ    +EN ++V VV+DV NRDSF+SC +WLQGVR+     S+ +PGV++ANKSDLREGGIN+RA V  +     EGR FA +N L++FETSAA AK +DAPF+ +A++FH+ YE+T++ AE   G
Sbjct:   26 KSALRSMESAHKPLLMLRCKVVLVGDACVGKSALVQMFHGGGQRYPKNYVMTTGVGFCVKQVNIPDTNCAVELYLFDCAGQSIFNQREQNLKSWENTSYVVVVYDVGNRDSFQSCAKWLQGVRST--RQSSMIPGVLVANKSDLREGGINSRAAVSDE-----EGRNFAQENSLEFFETSAAEAKNVDAPFNFIASQFHQKYEQTVQRAEALSG 232          
BLAST of mRNA_Ecto-sp6_S_contig96.18644.1 vs. uniprot
Match: A0A835ZCC9_9STRA (IFT27, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC9_9STRA)

HSP 1 Score: 253 bits (647), Expect = 1.810e-82
Identity = 125/209 (59.81%), Postives = 160/209 (76.56%), Query Frame = 1
Query:   67 MQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAEIEGGL 693
            M+  H+  LMLR+KVV+VGDA VGKT++ QM  S GH+YPKNY+MT  VDF VKQ+++PE +C VELFLFDC GQGVFNKL+  A +++NA+FVCVVFDV NR+SF+SCGRWLQGVRA  PT +AP+PGV+I +K+DLREG   +RAVV+ +     EG  FA +NGL YFE SAA + G++APF HMA +FH  YE ++  AE   G+
Sbjct:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPT-AAPMPGVLIGSKADLREG---SRAVVDAQ-----EGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAGV 200          
BLAST of mRNA_Ecto-sp6_S_contig96.18644.1 vs. uniprot
Match: A0A7S3M1Q0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1Q0_9STRA)

HSP 1 Score: 222 bits (565), Expect = 5.990e-70
Identity = 104/207 (50.24%), Postives = 151/207 (72.95%), Query Frame = 1
Query:   49 QSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIE 669
            QSG+RSM+T+H+T ++LR K+++VGDACVGKT++ Q F SGG  YPKNY+MTIG +F VKQV +PET+ +VELF++DC GQ +FN+L+  + YYENA+ V VV++V+NRDS  SC +W+ GV+A +  +  PL G  + NK + R+G I++RA V+     + E +  A   G+ YFETSAA   G+DAPF ++A  F+  YE+T++
Sbjct:    2 QSGLRSMETSHKTMVILRCKLILVGDACVGKTALTQSFVSGGTTYPKNYLMTIGAEFNVKQVTIPETNVIVELFIYDCAGQSIFNQLDLNSKYYENASAVMVVYNVANRDSLLSCNKWVSGVKA-IQNSGVPLVGAFVGNKCEFRDGSIDSRAEVD-----ILEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEETVQ 202          
BLAST of mRNA_Ecto-sp6_S_contig96.18644.1 vs. uniprot
Match: A0A7S3JRK5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRK5_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.700e-67
Identity = 118/218 (54.13%), Postives = 149/218 (68.35%), Query Frame = 1
Query:   25 SGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAE 678
            S S A   QS VRSM++ HR+ LMLR KVVVVGDA VGK++++ MF SGG  +PK Y+MT  VDF VKQV +PE+   VEL+LFDC GQ +FN++E   A+YENA+F+C+V+DVSN  SFESCG+WLQ V  + P+    LPGV+IANK DL  GG   R VV T+     +G+ FA  N L YFETSA   +  D PF H+A  F + YE TI  A+
Sbjct:    4 SKSSAVEYQSAVRSMESGHRSILMLRCKVVVVGDAAVGKSALISMFHSGGSSFPKQYLMTAWVDFRVKQVSIPESSTAVELYLFDCGGQSIFNQIEANNAHYENASFLCLVYDVSNASSFESCGKWLQMVSKSRPS----LPGVLIANKKDL--GGELGRRVVSTQ-----KGQEFASANNLAYFETSALEGE-FDEPFRHIAIEFAKKYEDTIAHAQ 209          
BLAST of mRNA_Ecto-sp6_S_contig96.18644.1 vs. uniprot
Match: A0A7S0SQ35_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQ35_9STRA)

HSP 1 Score: 212 bits (539), Expect = 9.010e-66
Identity = 102/209 (48.80%), Postives = 150/209 (71.77%), Query Frame = 1
Query:   52 SGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAE 678
            SG+RSM + H++  +LR K+V++GD+CVGK+S++Q+F+SGG  YPKNY+MTIG DF VKQV +P+T+ VVEL++FDC GQ +FN+LE  + YYENAA V VV+D+ N+++ +S  +WL G+++A+   S  L GV++ NKSD R+G +++RA V  + +  F   L     GL YFE SAA   G+  PF H+AT F++ YE T+  A+
Sbjct:   14 SGIRSMDSKHKSLTVLRCKLVIIGDSCVGKSSLLQVFQSGGTTYPKNYMMTIGADFNVKQVPIPDTNIVVELYIFDCAGQPIFNQLEMNSKYYENAAAVMVVYDIGNQETLQSTTKWLTGLKSAVSNPS-DLIGVLVGNKSDYRDGSVDSRAEVVKEDAQRFSKDL-----GLAYFEASAASNIGVTEPFLHVATEFYKKYEDTLRKAD 216          
BLAST of mRNA_Ecto-sp6_S_contig96.18644.1 vs. uniprot
Match: A0A8J2SZ95_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZ95_9STRA)

HSP 1 Score: 207 bits (527), Expect = 5.540e-64
Identity = 112/215 (52.09%), Postives = 143/215 (66.51%), Query Frame = 1
Query:   34 VAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAE 678
            V  P +S +RSM+TTHRT LMLR KVVVVGDA VGK++++ MF SGG  YPK Y+MT  VDF VKQV +P+T   VEL+LFDC G  VFN++E+ A+ Y+ A F+ VV+DV+  DSF SC +W+QGVR         LPGV++ANK DL E     R VV+ +      GR FA +NGL YFETSA      + PF H+A  F + YE+T+  AE
Sbjct:   21 VPEPMESCLRSMETTHRTILMLRCKVVVVGDATVGKSALISMFHSGGASYPKQYVMTSWVDFRVKQVDIPDTSTAVELYLFDCAGDPVFNQVEENASQYDQAGFLFVVYDVTKEDSFASCAKWIQGVRKGREDR---LPGVLVANKIDLEE-----RRVVDEQ-----RGRDFAKENGLVYFETSALQGN-YEGPFRHVAMEFAKKYEETVARAE 221          
BLAST of mRNA_Ecto-sp6_S_contig96.18644.1 vs. uniprot
Match: A0A0N7L680_PLAHL (Intraflagellar transport protein 27 homolog n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L680_PLAHL)

HSP 1 Score: 204 bits (519), Expect = 4.200e-63
Identity = 100/208 (48.08%), Postives = 145/208 (69.71%), Query Frame = 1
Query:   52 SGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGA 675
            SG+RSM+TTH++T +LR KV +VG+A VGKT+VVQ+ KS GH++PKNY+MT  V+   K + +P+T+ VVEL+LFDC GQ +FN+L+ G  +Y+ A+   VVFDV+N++SF+SC +W Q VR A P  +  +PGV++ANK+DLR    N R  + TK     E   FA +N + +FE SA    G++APF ++A  FH+ Y+ T + A
Sbjct:    2 SGLRSMETTHKSTTVLRCKVAIVGEATVGKTAVVQILKSNGHEFPKNYVMTSDVELSTKSISIPDTNVVVELYLFDCAGQSIFNQLDFGTVHYKGASIALVVFDVNNKESFKSCSKWYQDVRDASPNHN--IPGVLLANKTDLR---YNNRDAISTK-----EAEEFAKRNDMKFFECSAQQNAGVEAPFVYIADWFHKKYQATTQRA 199          
BLAST of mRNA_Ecto-sp6_S_contig96.18644.1 vs. uniprot
Match: A0A7S1XUM6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUM6_9STRA)

HSP 1 Score: 204 bits (519), Expect = 3.410e-62
Identity = 104/206 (50.49%), Postives = 143/206 (69.42%), Query Frame = 1
Query:   40 APSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPE--TDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHET 651
            A ++SG+RSM+T+   TLMLR KVV+VGDACVGKT++  MF+S    YP+ Y MT  V+F VK V V     +   EL+LFDC GQ +FN++   +  +ENA++V +V+DV+NR+SF+SCGRWLQ +R+  P++  P+PGV++ANK DLR   +++RA V     T  EGR FA +NGL YFE SA    GI+ PFHH+A  F+ T
Sbjct:   16 AEAESGLRSMKTSFVPTLMLRCKVVIVGDACVGKTAIASMFESNLQQYPRKYNMTTTVEFTVKLVPVRAEGVNVAAELYLFDCAGQSIFNQVGTNSKNFENASYVIIVYDVANRESFQSCGRWLQQIRSTRPSSGPPIPGVLLANKIDLRSDMLSSRAEV-----TESEGRGFAAENGLAYFECSALQGAGINEPFHHIANTFYVT 216          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJQ1_ECTSI1.470e-15696.55IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus s... [more]
A0A6H5KZL0_9PHAE1.470e-11597.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2XVJ0_9STRA4.270e-8357.48Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZCC9_9STRA1.810e-8259.81IFT27, ras superfamily GTPase n=1 Tax=Tribonema mi... [more]
A0A7S3M1Q0_9STRA5.990e-7050.24Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3JRK5_9STRA1.700e-6754.13Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S0SQ35_9STRA9.010e-6648.80Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A8J2SZ95_9STRA5.540e-6452.09Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0N7L680_PLAHL4.200e-6348.08Intraflagellar transport protein 27 homolog n=1 Ta... [more]
A0A7S1XUM6_9STRA3.410e-6250.49Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:439667..443462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score446.0
Seed ortholog evalue1e-122
Seed eggNOG ortholog2880.D7FJQ1
Preferred nameIFT27
Model size699
KEGG koko:K07934
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007264,GO:0007275,GO:0007399,GO:0007423,GO:0008104,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022008,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030705,GO:0030990,GO:0030992,GO:0031175,GO:0031344,GO:0031410,GO:0031503,GO:0031514,GO:0031982,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035556,GO:0035639,GO:0035720,GO:0035721,GO:0035735,GO:0036094,GO:0036126,GO:0042073,GO:0042490,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043583,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0046907,GO:0048468,GO:0048513,GO:0048666,GO:0048699,GO:0048731,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060113,GO:0060119,GO:0060122,GO:0060271,GO:0060491,GO:0065007,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0090102,GO:0097159,GO:0097223,GO:0097225,GO:0097228,GO:0097367,GO:0097542,GO:0097708,GO:0097729,GO:0099111,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1901265,GO:1901363,GO:1902017,GO:1902115
Exons5
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0079@1,KOG0079@2759
Ec32 ortholog descriptionIFT27, Ras superfamily GTPase
Ec32 orthologEc-06_010640.1
Cds size699
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04031
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350591.3560483-CDS-Ecto-sp6_S_contig96:439666..4398671682350591.3560483-CDS-Ecto-sp6_S_contig96:439666..439867Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 439667..439867 +
1682350591.3707607-CDS-Ecto-sp6_S_contig96:440402..4405161682350591.3707607-CDS-Ecto-sp6_S_contig96:440402..440516Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 440403..440516 +
1682350591.3808665-CDS-Ecto-sp6_S_contig96:440833..4410551682350591.3808665-CDS-Ecto-sp6_S_contig96:440833..441055Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 440834..441055 +
1682350591.4003077-CDS-Ecto-sp6_S_contig96:442736..4428491682350591.4003077-CDS-Ecto-sp6_S_contig96:442736..442849Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 442737..442849 +
1682350591.4159875-CDS-Ecto-sp6_S_contig96:443413..4434621682350591.4159875-CDS-Ecto-sp6_S_contig96:443413..443462Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 443414..443462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18644.1prot_Ecto-sp6_S_contig96.18644.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 439667..443462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18644.1

>prot_Ecto-sp6_S_contig96.18644.1 ID=prot_Ecto-sp6_S_contig96.18644.1|Name=mRNA_Ecto-sp6_S_contig96.18644.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=233bp
MPRADTILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSV
VQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVF
NKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLP
GVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGA
KGIDAPFHHMATRFHETYEKTIEGAEIEGGLP*
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mRNA from alignment at Ecto-sp6_S_contig96:439667..443462+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18644.1 ID=mRNA_Ecto-sp6_S_contig96.18644.1|Name=mRNA_Ecto-sp6_S_contig96.18644.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3796bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:439667..443462+ (Ectocarpus species6 EcLAC_371)
ATGCCTCGGGCTGACACAATTTTGTCGGGGTCCGTTGCGGCACCGTCCCA GAGCGGAGTCCGCAGCATGCAAACAACTCACAGAACGACGTTGATGCTTC GCGCCAAGGTCGTTGTTGTCGGAGACGCTTGCGTGGGGAAAACATCGGTG GTGCAGATGTTCAAGAGTGGCGGCCACGACTACCCAAAGAACTACATCAT GGTGAGGTACTGCTGTTCGAGGTCTCATCGTAAAATACATAGTTGTTTAT CTACGTATGGCCTCACAACATGTTTCATTATTTTCATCGACTCACAGGAG TGGGAATGCATACATACGCTTGCCTCGGTGCAACACATGCTGCGTGCGGT TGTTGTGGTGTACGTAACCGTGGTACGATTTCTTTGGAAGGGTTTGTTGA CATGTAGCCGGTCAACATGCGATATGTGCAGCAGGAGGGGAGATCACACT CAACCTGTGCTTTGGGTTTGGATCTCCCGGAATATTGCCCACTCTCGGAG TATGGTACACACAAGCAAGTTGTCCAAGGCAAACTGCATGCATCGTGTAT TCCAGACAAGTTGATGCACTTCATATTTTTCGCTTACTGTTTAGACTAGT AAATATCCACTCATCTACATAATACTATAGCTGCTATGGGCTTGTCCCAA TATTCCCAAGTCCTCTATGCACTCTCGCATCAAATGCGATATTTATCATC GACGTCGACCCTATACACCACACACACACCCCGCAGACCATCGGGGTAGA CTTTGGAGTGAAGCAGGTGAAAGTTCCCGAGACGGACTGCGTGGTAGAGC TGTTTCTGTTCGATTGCCCTGGACAAGGAGTTTTCAACAAGCTTGAACAG GTTAGTGAGGGGATCGAGAATGCGGTGGAGCGTGCATGGCATGGTGCAAC GTTTTCTGACTAATAGGTTGCAGTCCTTCTCGCTCGTCTCTACAGCACGG GACACAGTTGGGTCTTGTTTGCCCTTTTAAGCCCTAACTGCTGTTATTTA GAGAAAGTAGGAGGGTTTATCTACCTGAGGATTCCGAACTATCGAATGCA CGCAACGAAAGACCTGCGGCACAGCAGTTGCCAATTTAACTCGATGCTGA AACCCGAACTAATGACGCCGCACTGTTGTTTGGCAATTGTTCTCTTGTTG TTGGCGGCCGCATAAAGGGGGCGGCATACTACGAGAACGCAGCGTTTGTG TGTGTGGTGTTCGACGTGAGCAACAGGGATTCCTTTGAAAGCTGTGGGCG GTGGCTGCAGGGAGTACGAGCGGCCCTGCCAACCACGTCGGCACCCCTGC CGGGGGTTGTAATCGCCAACAAGTCGGACTTGAGGGAAGGGGGTATCAAT GCCAGGGCCGTCGTCGAAACCAAGGCAAGTACCCTGTTTGTTACTTTTGA GAGTAAAGTGGCATCCGCCCAACTCACGTTCATGTAACTACCCCATCGCA ATACTTGCGCGAAGCCTCGGGACTTTTTCCGGCGTCCAATCCGATGTGGT GCATGTTGAAATACAGAGCATTCCATCCATGTAGAAATTTCTTTCCACCA TGTTGTCTGACTTCGAAGTAATATTTTTTACCGCAGAATCTATGGTATCA CTACTAACTTCTCTTCAACCACGTTCTTCCACTTGGTTTCAGCTACACTG ATTGCAGTTTGTTGCAATTCTTGTGTTACTTTCTCCAGGTATTCAGACAC CTTGTTATTCACCTACACTCGTTTGTTTCTTCACTTCTTCCTTCATACTT TGCTTAAGCAAATCCTTGCAATAGAACTGTCCTTGTTCTTGGCATGATTT TATGGTTTCTCCGTGGAGTCCAGAGATCGCCTCGTAGTTGGGACTCGGCT TAGCATTTTTCCGCTGCTTGCTGATCCACATCCTACTGATGGTTGTAAAC CTTCCTGCCGCGAACATCACTTGTGCAATGTGCATTTTTGCGGCTGGAAC AAGTAATGTTCGCGGCGGGGAGGTTTACAGCCATCAGTAGGATGTGGACC AGCAAGCAGTGGAAAAATGCTACGCCGAGTCCCAACTATGAGGAGATATC TGGACTCAACGGAGAAATCATGAAACTATGTCAAGAACAAGGACAGGTCT ATTACAGCGATTTGTTTATGCAGAGTATGAAGGAAGAAGTGGAGAAACAA ACGAGTTTATGTGAATAACAAGGTGTCCGAATAACTGGATGAAGTAACAC AAGAATTGCAACAAACTGCACTCAGTGTAGCTGAAACCAAGTGGAAGAAC TTGGTTGAAGATAAGTTAGGTGCAGTGCTAGATTCTGCGGTCAAAATTAT TAAGAGGCAGAATGGTGGAAAGAAATTCGGTCGTAAGTAGAGGGATAAAG TAAATGAGAAGGTAAACAACTGAGAAGCAGTTGTTGAAGAATAGTCATAC CTATATATGGGAGCGTGTATATTGCAGGAGTACAAATGGAATGGGTACCA GACCTGCAGGATTTGTAGATTTAGAACAACGGTGAGGTTGTTGAAGCGCA CGTAACATTGCATCCATCATGGGGGCGTGTTGAAACACAGAGCAATAATG CGGTAGGATGTGTTCAGTACGATATATGCTGCTGTTTGATTGCTGTATGC AATGATACGTACAGATGCGGTATGTATGATAAACGGCGTTTGGTTGAACA TGTAGCGACGAGTTATAGCGAGGAGCTCGTGCATGAACTGATGTTGATCA GAGGATGATAATTGTAGCGAGATCACGAGGTGTTGCGAGGCCCACCAGGC TCAGTCCCAAATATCCCTCAACATCTCAACTTTGCAAGTAAGCTGTGAAG TGAACAAGACCGAGAAGTGCAAAGTCCCAGAGGCGGCATTTAGCAACAAC ATCGACTTTGGTCGCTGCCTCAACAGACTTCGGTCTACACAGACTTTGGT CTGAACATTACACAGAATTCTGTCTGGAACTGCACAAAGGCTTGACCACC TGCAGACGACCCTTGGGTAAAGGGTACCTCGACACTACACATTTCTACAG TGCATTCCCGTCTGTTTCTGGATTCCTGCCGAATCTCCTCGGTTTGGCAT TGCCACGTGCTCGCTTGCAGGAGGGGCGACTGTTCGCCCTTCAGAATGGC CTAGACTACTTCGAAACGTCTGCAGCGGGGGCGAAAGGTATCGATGCGCC GTTCCACCATATGGCGACAAGGTTCCACGAAACGTGAGTGATATCCTTCA CGATACATGAAATTGATTATTTGCTCGCCACCATGCGTGATTCGTAACTC TCACCAAGCGCTTATCGCGGGTTCCGTCGAGAAAATTATTTCGCAATTTG GAAATGTGCGATCTCGTATCCTTCCGTGTGTCGTCTCCATGTCAACTGGA TGACGTTTCAGAGATAATCAGGGTTAGGGAGCGATACTTCTAAGAATGAT GCAACAGGTGAACCCTGGTACATTCGCCCGGTAAATACGCATGATTGGTT ATAAGTTAAACAAACGGAAACAAACCCGAGAGCGGCATCATACCTTTGAA TACCACATCGAAACTGCGATCACTGCAAGACTTTTCGTATTTTTGGCATT TGCTCTCTTCTCGAGGTTGTCTTTACCCTTTCGGTTGCGACAGGTGCTCC TAATGCAGCCCGTTGAACCGACTGCATGTGACCCGAGGATGTTTGGCTAA AAAAGCTTCGCACTACTTTTTTGACAATTCCGTCCATGCTCTTGCCTGAC TGTCTGCTATGTCGTAAATCACTACGGCACCTGACCGGGACCTACAGCTA CGAGAAGACCATCGAGGGGGCGGAGATCGAGGGTGGGCTTCCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:439667..443462+

>mRNA_Ecto-sp6_S_contig96.18644.1 ID=mRNA_Ecto-sp6_S_contig96.18644.1|Name=mRNA_Ecto-sp6_S_contig96.18644.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:439667..443462+ (Ectocarpus species6 EcLAC_371)
ATGCCTCGGGCTGACACAATTTTGTCGGGGTCCGTTGCGGCACCGTCCCA
GAGCGGAGTCCGCAGCATGCAAACAACTCACAGAACGACGTTGATGCTTC
GCGCCAAGGTCGTTGTTGTCGGAGACGCTTGCGTGGGGAAAACATCGGTG
GTGCAGATGTTCAAGAGTGGCGGCCACGACTACCCAAAGAACTACATCAT
GACCATCGGGGTAGACTTTGGAGTGAAGCAGGTGAAAGTTCCCGAGACGG
ACTGCGTGGTAGAGCTGTTTCTGTTCGATTGCCCTGGACAAGGAGTTTTC
AACAAGCTTGAACAGGGGGCGGCATACTACGAGAACGCAGCGTTTGTGTG
TGTGGTGTTCGACGTGAGCAACAGGGATTCCTTTGAAAGCTGTGGGCGGT
GGCTGCAGGGAGTACGAGCGGCCCTGCCAACCACGTCGGCACCCCTGCCG
GGGGTTGTAATCGCCAACAAGTCGGACTTGAGGGAAGGGGGTATCAATGC
CAGGGCCGTCGTCGAAACCAAGGCAAGTACCCTGTTTGAGGGGCGACTGT
TCGCCCTTCAGAATGGCCTAGACTACTTCGAAACGTCTGCAGCGGGGGCG
AAAGGTATCGATGCGCCGTTCCACCATATGGCGACAAGGTTCCACGAAAC
CTACGAGAAGACCATCGAGGGGGCGGAGATCGAGGGTGGGCTTCCTTGA
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