mRNA_Ecto-sp6_S_contig96.18642.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18642.1
Unique NamemRNA_Ecto-sp6_S_contig96.18642.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:385556..387854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2299
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_010660.1
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350590.5035386-UTR-Ecto-sp6_S_contig96:385555..3856491682350590.5035386-UTR-Ecto-sp6_S_contig96:385555..385649Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 385556..385649 +
1682350590.5282803-UTR-Ecto-sp6_S_contig96:385814..3878541682350590.5282803-UTR-Ecto-sp6_S_contig96:385814..387854Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 385815..387854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350590.5153582-CDS-Ecto-sp6_S_contig96:385649..3858141682350590.5153582-CDS-Ecto-sp6_S_contig96:385649..385814Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 385650..385814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18642.1prot_Ecto-sp6_S_contig96.18642.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 385650..385814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18642.1

>prot_Ecto-sp6_S_contig96.18642.1 ID=prot_Ecto-sp6_S_contig96.18642.1|Name=mRNA_Ecto-sp6_S_contig96.18642.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=55bp
MVAPSVDAHHTPHSKQSMLLCTHTTLGRQLSAQIGLSRGRKVLLPCHVRY
GGRI*
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mRNA from alignment at Ecto-sp6_S_contig96:385556..387854+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18642.1 ID=mRNA_Ecto-sp6_S_contig96.18642.1|Name=mRNA_Ecto-sp6_S_contig96.18642.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2299bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:385556..387854+ (Ectocarpus species6 EcLAC_371)
GTGATTGCATTGGAGCGCGAGCTCGTATTTCCGCGTTGACAGCGAGGACA
GGACTTGGGTCGCATCAGCTTGTTTGAATAGGGTCGGGGCAGAGATGGTT
GCCCCCTCGGTCGATGCACACCACACACCACACAGCAAGCAGTCGATGCT
GCTGTGTACCCACACGACCCTTGGCCGACAGCTCAGCGCGCAGATCGGAC
TGTCAAGAGGGCGTAAAGTATTGCTGCCTTGCCACGTCAGGTACGGTGGT
CGTATTTAATTTAACATGTGATGTTGTGGCCCCTGTTGGGATTGCGTGGC
GGGAGTACAGATGCGCTCGCGCCGTTTTTCGCGAGTCGGCTGCTTGGTAT
AGGCGAAAGGCGGGTAGCGCGCGGCGCTCGCAAGTAGAAGTAAGCTGAGG
TTCCTGTGGGCATGGAGTGCAGGATTTGATGAGGACACATGCAGTATTTC
GATGGCGAAGCGAGACCCGCCTGGCTCTCGTTGCGCTCTGTTGTGGCTTG
CTGGGCATTTGTCGGCTATTGTGGAACTCGTTGGGCACGATCTGGTCCTT
TCAATTTGATTGGCTCGTTGATCTGATTTGGCTTTTCAGTCAGGTTCGAT
TTGATTAGTCCCTCACTGGTCGATATGATTGGTCTACCGGTCTCGTTGGT
TGCCCGGAGGTGATGAAGACGTTTGTCGAGCAGTGTTTGTCCCGCTCCCC
TCCTTCCAGTAAGGCTTTCGCGGTTGCTTTCCCAGTGTCGGCTTGATGGC
AATCGATGCCAAACGACCATCCGGCATGTACACAAGACAAGAAGTCGGTG
TAAAGTTCACTGTTGGTTGACTGCTATCCTCGTCGTCGTTTTTTATTTCC
TTCCATCGTCCGAATTTTTTTTTTGATGTGTGCGGCCTGCGGGAGAGTTG
TTCCAAAGAGAGGGGGAGACAGATTTCGCTTCAAAGATTTCGCTTCCAAC
AGTTTATTTAGTTTTCACTGCCTGACAACTCTTGTTGATCCAATAGCTGC
TGTTTCCAAGCAAGGGGCACGTCATCGAGAGACGGCCATGTATGTTCTCT
ACACACTTGTGCGTGCTCTCTCTGTTTTTTACAGTCCAAGCAGACACCAC
TTCCCTCGCGAGGCAAACAGGCCAGAGTTGCGCAGAGTAGTAGGCTTTGG
ATTCATTTTTTTTTTTTGGGGGGGGGGTAACTAAAAGGGTTGTTTGTAAA
CCTCGGAGTAGTGCACAGAAGGGGAACCCTTTCGCGTGGAGACAGCAGCC
AGTCGGCTTAAGCATGCATGCGTGTGTGGTTTGCTTCTCCTCGCCATTTG
TTTTTAAAACGATATCCTCGTTGGCCCTGCTTGCTTTGTCGTCACGTTGT
TTCCGCTTGTAGTTGTTGGCTCGGGCTATTCCCCCCCTCCGACGAACCGG
AAGAGGAAGGACACAAGAACGGCAGCGGCTCTATCTGGCCACATTGTTTG
CAGTAGGCGTACACTCTGTCGGTCGTGCGTGCGCGTACGGTTTTTTGGTC
GGTCTGTAGAGGCTGAAGTAGGTCAGCGACGCTATTTTTGTACGAGTGTC
GGGGGGGGCGCGACGGCAGTAAGAGTCAGGCCAGTCCGAGCCCATTTTAA
TCCTTTGAAACCGTGCAGGGGGCACTCGGATGTGCCCAAGACCTGACAGG
TTGATAAAAGAATGCACAGCAGCTGACTCTTAATTTGCAGCATGGTCGAA
CTTCGGTGTTCCATTTTCCCATTACATGTTTTCTTTTCAGTGTTTTTTGT
TGTCGTTGTCCCCTCCCCTCCTCACCGGAAAGGAGACGGAAAATATTGTG
TTGTGTATGCGCAGTAAGGTCAGGAATCAGAGGAATATTTTTAGGAGACC
TGTCAGTTTTGTTTGTTCACAAACTTTTGACTTTTTCTATTTGAACACGC
TCGGTGAATATATGGCAGGAACGATCGATGTCAAAATCACGTTCGAGAGC
AAATTTTGACGGTGACATGGAAGACTCGGACAACTGAATAGTCTAACAGC
AGCCGTATTGGGGCAGAAACAGAGGGCCGCTTCTTGGTGTGTTTCTAGCG
GGCGGGGTGCGGGGTAGCATCTCGAACCACGCAACCTTGCGTATCAGCTT
ACTTCTTTAGTATTCCCACAAGTCACCATCGGGTGAGGCATATTATCGGC
TTGGACTACAGTATAGCCCTCATGTCCTTTATTTTTCCATTTTTTTTGGC
AAGGTGCACCAGCCTACATGCATCGATCGACACACGGGAGGTAGCGTGGA
TAGGGGATAGGGTACTACTACACCTGCCCGCCTCATCAAGATCAGCCTG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:385556..387854+

>mRNA_Ecto-sp6_S_contig96.18642.1 ID=mRNA_Ecto-sp6_S_contig96.18642.1|Name=mRNA_Ecto-sp6_S_contig96.18642.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:385556..387854+ (Ectocarpus species6 EcLAC_371)
ATGGTTGCCCCCTCGGTCGATGCACACCACACACCACACAGCAAGCAGTC
GATGCTGCTGTGTACCCACACGACCCTTGGCCGACAGCTCAGCGCGCAGA
TCGGACTGTCAAGAGGGCGTAAAGTATTGCTGCCTTGCCACGTCAGGTAC
GGTGGTCGTATTTAA
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