mRNA_Ecto-sp6_S_contig96.18638.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18638.1
Unique NamemRNA_Ecto-sp6_S_contig96.18638.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig96.18638.1 vs. uniprot
Match: A0A6H5LGR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGR8_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 5.890e-89
Identity = 240/292 (82.19%), Postives = 243/292 (83.22%), Query Frame = 1 
Query:    1 MSTIGGASSKQSQRSSSTTRSSRRATLGIGSLSPERSMRTAVLRERSNDGAVKAKETTKASKGPTRTQQMQFAFGSKIIKPSSTGSGSTAGMGSSGAVMPTRGRTTTTAHRGGAVAADTGSALARSRREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKVQLEEKESVIAELRRQLEAKAGGGDSGVKGXXXXXXXXXXXXXXXXXXXXSDELNEGEKAALRAVQEEARADAEEKLSRVEAVTSAGLASLSEMQDRVDEMIRGLKARRSQ 876
            MST+GGASSK   RSSSTTRSSRRATLGIGSLSPER MRTAV RER+NDGAVKAKETTKASKGPTRTQQMQFAFGSKIIKPSSTGSGSTAGMGSSGAVMPTRGRTT                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LKVQLEEKESVIAELRRQLEAKAGGGDSGVKG                    SDELNEGE+AALRAVQEEARADAEEKLSRVEAVTSAGLASLSEMQDRVDEMIRGLKARRSQ
Sbjct:    1 MSTVGGASSK---RSSSTTRSSRRATLGIGSLSPERFMRTAVFRERNNDGAVKAKETTKASKGPTRTQQMQFAFGSKIIKPSSTGSGSTAGMGSSGAVMPTRGRTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALKVQLEEKESVIAELRRQLEAKAGGGDSGVKGPSTLSSASDTSKQQQQ----SDELNEGEQAALRAVQEEARADAEEKLSRVEAVTSAGLASLSEMQDRVDEMIRGLKARRSQ 285
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BLAST of mRNA_Ecto-sp6_S_contig96.18638.1 vs. uniprot
Match: D7FJP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP6_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 1.070e-78
Identity = 202/210 (96.19%), Postives = 202/210 (96.19%), Query Frame = 1 
Query:    1 MSTIGGASSKQSQRSSSTTRSSRRATLGIGSLSPERSMRTAVLRERSNDGAVKAKETTKASKGPTRTQQMQFAFGSKIIKPSSTGSGSTAGMGSSGAVMPTRGRTTTTAHRGGAVAADTGSALARSRREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKVQLEEKESVIAELRRQLEAKAGGGDSGVK 630
            MSTIGGASSKQSQRSSSTTRSSRRATLGIGSLSPERSMRTAVLRERSNDGAVKAKETTKASKGPTRTQQMQFAFGSKIIKPSSTGSGSTAGMGS GAVMPTRGRTTTTAH GGAVAADTGSALARSRRE  XX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  LKVQLEEKESVIAELRRQLEAKAGGGDSGVK
Sbjct:    1 MSTIGGASSKQSQRSSSTTRSSRRATLGIGSLSPERSMRTAVLRERSNDGAVKAKETTKASKGPTRTQQMQFAFGSKIIKPSSTGSGSTAGMGSGGAVMPTRGRTTTTAHSGGAVAADTGSALARSRRERAXXHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALKVQLEEKESVIAELRRQLEAKAGGGDSGVK 210
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LGR8_9PHAE5.890e-8982.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJP6_ECTSI1.070e-7896.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:361448..365908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1489
Hectar predicted targeting categoryother localisation
Exons7
Cds size879
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18638.1prot_Ecto-sp6_S_contig96.18638.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 361448..365298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350590.1359537-CDS-Ecto-sp6_S_contig96:361447..3616351682350590.1359537-CDS-Ecto-sp6_S_contig96:361447..361635Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 361448..361635 +
1682350590.1510527-CDS-Ecto-sp6_S_contig96:362276..3624711682350590.1510527-CDS-Ecto-sp6_S_contig96:362276..362471Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 362277..362471 +
1682350590.15978-CDS-Ecto-sp6_S_contig96:363365..3635251682350590.15978-CDS-Ecto-sp6_S_contig96:363365..363525Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 363366..363525 +
1682350590.1705456-CDS-Ecto-sp6_S_contig96:363765..3638261682350590.1705456-CDS-Ecto-sp6_S_contig96:363765..363826Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 363766..363826 +
1682350590.185357-CDS-Ecto-sp6_S_contig96:363989..3640541682350590.185357-CDS-Ecto-sp6_S_contig96:363989..364054Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 363990..364054 +
1682350590.1965108-CDS-Ecto-sp6_S_contig96:364479..3646581682350590.1965108-CDS-Ecto-sp6_S_contig96:364479..364658Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 364480..364658 +
1682350590.2067046-CDS-Ecto-sp6_S_contig96:365267..3652981682350590.2067046-CDS-Ecto-sp6_S_contig96:365267..365298Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 365268..365298 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350590.2172976-UTR-Ecto-sp6_S_contig96:365298..3659081682350590.2172976-UTR-Ecto-sp6_S_contig96:365298..365908Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 365299..365908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18638.1

>prot_Ecto-sp6_S_contig96.18638.1 ID=prot_Ecto-sp6_S_contig96.18638.1|Name=mRNA_Ecto-sp6_S_contig96.18638.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=293bp
MSTIGGASSKQSQRSSSTTRSSRRATLGIGSLSPERSMRTAVLRERSNDG
AVKAKETTKASKGPTRTQQMQFAFGSKIIKPSSTGSGSTAGMGSSGAVMP
TRGRTTTTAHRGGAVAADTGSALARSRRERAARHDTQDQQPQQRASSRGR
GAARAEKQQSLASTTRQESDHHHHHASAALKVQLEEKESVIAELRRQLEA
KAGGGDSGVKGSSALSSASETSKQQQQLQQQSDELNEGEKAALRAVQEEA
RADAEEKLSRVEAVTSAGLASLSEMQDRVDEMIRGLKARRSQ*
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mRNA from alignment at Ecto-sp6_S_contig96:361448..365908+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18638.1 ID=mRNA_Ecto-sp6_S_contig96.18638.1|Name=mRNA_Ecto-sp6_S_contig96.18638.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4461bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:361448..365908+ (Ectocarpus species6 EcLAC_371)
ATGTCTACGATAGGCGGGGCTTCCTCCAAGCAATCTCAGCGATCAAGCTC
GACGACGAGGTCATCTCGACGTGCAACGCTTGGAATCGGCTCGTTGTCCC
CTGAGCGATCCATGAGGACGGCGGTGTTGAGGGAGAGGAGTAACGATGGG
GCCGTGAAGGCTAAGGAAACGACCAAGGCATCGAAAGGGTGAGCCCTGTC
CGTGTGAACGGCGTAATTTCGTAGCCCGGGTAGGTACGGGACCAGAGGCA
CCTAAAAAGCGGTGTGTTTTCCCGATTGGTCAAAACAGAAACCTTTTGTA
CGGCAGTGCAAGTTCATGCCGCTGGTATAAGGCCGGTCTGCTCACGAAGT
CTACAGCACTTGCTCTCTTGATGATCGATTGCCGAGACGCTTGCCACATA
TCTTCATCTAGACATATCTGCACGCTTGTCTATTTTCCCGAAGAGTTCGG
TGGGTCAGCCGTGGAAATGAGCACCACGACTGCTGCTGTTGTTGCGCGCA
GAAGTGAGGTGTGCGGTGTAATATTCACAGGCAGCAGTAGTTCGCCCACA
CAGCAGTGTTCCCGCAAGGACACATCGTAAGCTTACAGCTAGCTAGGGTG
GCCTAAGTAACGGCAACATCTTTGCCTTCTCCCGACCACGCGTGGGTATC
TGGGTAGGATGTTCTTTGTATGCTACATGTACTACTGTCGTAAAAGGTGG
GAGGACACTTGCGAGGCGAAAACATGAAGACCACAGCAACCATAGCAACA
GACGGCTGTGACGAAGCCCGCTGCTAATCGTTACCCTATCCCTCCTCTGC
TACGGCACACGTTTGCCCCTCCCGTTCAGCCCCACCCGAACGCAGCAGAT
GCAGTTCGCGTTCGGCTCCAAGATCATCAAACCTAGCTCTACTGGCTCCG
GCAGCACGGCAGGGATGGGCAGCAGCGGCGCGGTCATGCCGACCAGAGGA
AGAACAACGACGACAGCACACAGGGGTGGCGCGGTCGCTGCGGATACCGG
CAGCGCGCTGGCTCGGTCGAGGCGGTGAGCTGAGTCTTGCCAGTTGCCGT
CTGGGTTTCTTGGCGAACGCGGACGGTGTTTGGCCATGTTCGGGTTGGTG
CATACTACCGCTCAAGACAGATGCATCAACTCTGTCGCGACACTCTCCTC
CTTTTGTGGCCCCGGCTGATGCTGCCAGAAAGTGTGCCCGAAGGTCTTAC
GGCCGACGTCCAGGAATCGACACACACACGGGCTGAGACTGACTCATGTC
TTATCGTCGGCCATTCGGTTAGAGAGATCGAAGCTAGCAATAGATACACA
CATGCGCTCGGGTGTAGACGAAGCTCCAATGCCTCTCCGGGGCCGCCGTT
CTCGTCTTCCTACTGCCCCCGTAGAAAACGGCAGCATGCGTAAGCACCAC
TCACACAAGAGCAATGCTTGGAGATGACTCGATCCTTGGCTTGGAATTAG
TTCTAAAAGGAGATTTTAGTCCCCACGCCAGCTGTCCACACGATGAATCA
GGAGACAAAGAATGTTTGGGTACAAAGAATCGATTTCATCTTTTCCGTAT
CTGAAGATCAAGCAGCGAGGTACCGACTCAAAGAGGACCCACCAGTACCG
AAAGAGTTGATATTGTACCATGGTACTGAAACGGTATGATGGTGGTGCTG
CGAAAACGTATGAACATTCAATTTGTTTGTTTACGGTAGGCATCCTGGCG
GCAAAGGCTGTATAGGGCGATAAACCGTAAGTTACGCGCATCGGCTACAT
GCTGTGGTGAAAAGTTGTGGCGGGAAATCGGCCCGTGTACCCTGGAAGAA
ACAATACTACAGCTGTACTCCAATACTACTCGCGGTCTCAACATTAGTCA
TGTTTTGTCCACAGACACCCCAACATGCGATGCACGCCCTGCCTTCAACT
TTTGTCTCTGATTTCCAGAGAAAGGGCCGCCAGACACGATACCCAAGATC
AACAGCCGCAGCAGCGAGCAAGCTCGCGAGGACGAGGGGCTGCGCGTGCA
GAGAAGCAACAGTCTCTGGCCAGCACAACGCGACAAGAATCCGACCATCA
TCATCATCATGCATCGGCCGCCCTCAAGGTCTGCTTGCTGCAAGTGCTTC
GTCGCGAGATGTTCTATTGTTGCAATCGTCGACCAATCATGGCCGCCTGG
ATGCCCACATCGACATTCTCATTCCAAGTCATACTCGCTGAAAACGTACT
TGTAGACTTTACCGTCCTTTGGGCGTAACAGTTTCGCTACACTGTATTTC
CCGCGCTTTCTGTTGTGGTCGCACAAGTGATACGATTATCGACAACCAAC
TGCCGTGCCCACCCCCAGGTCCAGCTGGAAGAGAAGGAGAGTGTCATCGC
TGAGCTGAGGAGACAGCTCGAAGCAAAAGGTAAGTTCGTTCAGATATTAA
TTTATTTGCCACACGTTTACCTCTGCCGGAGCAAGGTTTTTTCGTTTTTT
CCCCCCATGTTGTGCTACTCCCCGCCTGTTTGCGGCCTAACTCGCTCTCC
CCCCGCCACCTCCTAAATATCTATGCCCCGCTCACTTGGCAGCCGGGGGA
GGTGATTCTGGCGTCAAGGGTTCGTCGGCGTTGTCTTCTGCGTCCGAAAC
TTCGAAGGTGCGAGCCAAACTCTTGCCCAATGCCTGGGACCTTGACCGTG
ATTGGTGTTCTGTTGTCGTGGTATGGCGTGTTGCACAGGGGTTCAATACG
AGATGTTGCTATGGTAATGGGGGTCAAGTTTCCTTTTTTTTTGGAAACGG
AGGGAGGCCAAAGTGTTTTTTAGGTCGGTATCAAGGCGGCAGAGCTACGT
ACGTGTTGGTTGGTTTGAGCTCTCTTTGAGCCTAGCGAGACTGTTATAGG
CTCTATTCGGAGTAACCTTCATGCAAATTTTAATAGGTATACACGGTGTG
TTCTTTATCTTTCATTTGCTGATTGTTTTACCAACTATGGATATGTCGGG
CAGCGGCAGCAACAGCAAGCAAACAGTTGTCGAGACATTGACACCAGCGT
TTGTTGGTCACAACTTGCGCCATTGAAAACAGCAGCAGCAGCAGCTGCAG
CAGCAATCGGACGAGTTGAACGAGGGTGAGAAAGCAGCGCTCCGAGCGGT
GCAGGAGGAAGCAAGAGCGGACGCGGAAGAAAAGCTCTCCCGAGTGGAGG
CCGTAACCTCAGCGGGGCTTGCGAGTCTCTCCGAGATGCAGGACAGGGTC
GACGAGATGATGTGAGTGCTGCAGTAGTAGTGCTTGCCTGAGTCGCGCTC
CGTGATTGACTCTCTGTGCTTAAATTGCCCGCGCTCCTCGGGTTACACTT
GACGGGCTTGCCTCGCGGGTGTTGGATGGGTGTTGCAGCGGGGGAGAAGC
AAGCCGGAACGGCGCTAAACACTACGGCTGTAGCCAGGTTGATTGGCAAA
ACACGTGATTCTTGAATGCCGACCATGATCTGCGAAGGGGTTCCACGGGG
TCAACGTGGAACATTGATGTCTTTGAACCTTCCTTTAGCTGAACTGGTAG
CTGCTGAGTTGTTTTGTTGGTGACCCGTTTGTCGGTCTGTCCACACCACC
CTCTGCCTCGAAGAGGCGCAAAACTGTTTACCCCTCCCCGCGCGCGCTTA
AGCCTGCCGTACTTAAACTTCCACCATATTCCGGAACTGGCTCTGTGCGA
CACAGCAAAGGTTCCCGTTCCCATCGAGACGACGAGACTCGTTTTTTCGG
TCCAAACCAAGACTGTGGCAAGAAACGAATGAGTGAGCGTTTGTCCCCGC
GCTTACCCATCCCACGGTGCCCCCCCTTCCCCCCCTCCTCTCCGTGTGTG
GTGTTATCTCATGGTCTCAGTCGGGGACTTAAAGCCAGAAGGAGCCAGTA
GCCTCGGAGAGAGTGAAAGCGTGGCGAAACGGTTGAACGGAGCTGTACCG
GGTAGTTGTGGTGATGAACACAGAGGGCGGGGAAATATGTGTGCGTGAGC
GTCTTCTTGTTGGCGTCGACCGCGCTAACATGCTGACCAATGAAAATACG
TGAGTCTCCATGCGGCTAGCAACGGCGAACGTGTCCATAGGTCATGATCT
GGGGTCACTTGCCGGGGGGGGGTGGAGGCCGGGCTATTTTCCGGAGTCAA
GACAGAAATGGTAGCAGATAAGACATGCACGTGGTATACAGTACGTTTGA
CAAGCCAGCCGGGGGCACACAGGAGGAAGGAAATCCCAGGTTTTGTTGTT
TTTGGAAGGAGAAGTGCGTAAACCTCTCTGATCGTTGCCCAATAGCCGTG
CAATACACGCCCTCCGTTGGAGGTGGGCACCAGGGGAGGGGGCGGGGAGT
TGGCTTAACCTTGTGCCAGTGCCAAAGAAAACTCGGAGAATTGATACGAA
AAAGTGGGAAATTTGAGTGCGTTGTTTCATCTTGGCCTTCTTCTGTGTAT
CTGGTTGTGGCCGTCCTTCATCAGTCATCAGTGTTTTCATCTGCCGGCGA
TGTCATTGCTG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:361448..365908+

>mRNA_Ecto-sp6_S_contig96.18638.1 ID=mRNA_Ecto-sp6_S_contig96.18638.1|Name=mRNA_Ecto-sp6_S_contig96.18638.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=879bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:361448..365908+ (Ectocarpus species6 EcLAC_371)
ATGTCTACGATAGGCGGGGCTTCCTCCAAGCAATCTCAGCGATCAAGCTC
GACGACGAGGTCATCTCGACGTGCAACGCTTGGAATCGGCTCGTTGTCCC
CTGAGCGATCCATGAGGACGGCGGTGTTGAGGGAGAGGAGTAACGATGGG
GCCGTGAAGGCTAAGGAAACGACCAAGGCATCGAAAGGCCCCACCCGAAC
GCAGCAGATGCAGTTCGCGTTCGGCTCCAAGATCATCAAACCTAGCTCTA
CTGGCTCCGGCAGCACGGCAGGGATGGGCAGCAGCGGCGCGGTCATGCCG
ACCAGAGGAAGAACAACGACGACAGCACACAGGGGTGGCGCGGTCGCTGC
GGATACCGGCAGCGCGCTGGCTCGGTCGAGGCGAGAAAGGGCCGCCAGAC
ACGATACCCAAGATCAACAGCCGCAGCAGCGAGCAAGCTCGCGAGGACGA
GGGGCTGCGCGTGCAGAGAAGCAACAGTCTCTGGCCAGCACAACGCGACA
AGAATCCGACCATCATCATCATCATGCATCGGCCGCCCTCAAGGTCCAGC
TGGAAGAGAAGGAGAGTGTCATCGCTGAGCTGAGGAGACAGCTCGAAGCA
AAAGCCGGGGGAGGTGATTCTGGCGTCAAGGGTTCGTCGGCGTTGTCTTC
TGCGTCCGAAACTTCGAAGCAGCAGCAGCAGCTGCAGCAGCAATCGGACG
AGTTGAACGAGGGTGAGAAAGCAGCGCTCCGAGCGGTGCAGGAGGAAGCA
AGAGCGGACGCGGAAGAAAAGCTCTCCCGAGTGGAGGCCGTAACCTCAGC
GGGGCTTGCGAGTCTCTCCGAGATGCAGGACAGGGTCGACGAGATGATTC
GGGGACTTAAAGCCAGAAGGAGCCAGTAG
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