mRNA_Ecto-sp6_S_contig96.18634.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18634.1
Unique NamemRNA_Ecto-sp6_S_contig96.18634.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig96.18634.1 vs. uniprot
Match: D7G5E5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E5_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 2.540e-123
Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 2
Query:  308 MRLASLQVTSACRCLAVVAVGVLWWCQQPVEASLGVGWKTLRANWLFKHESFEPFLSAASFLFFIGLWGFLDFFVPSASKHRTFLSDDLSSWFGGTRIRDQALWYIAPLVIFDLIFPRRQLPESAPSVGRLVLEVVAAIAVYDAAFFAWHASLHSNPALYRRVHAKHHKCHVQRAPEAVR 847
            MRLASLQVTSACRCLAVVAVGVLWWCQQPVEASLGVGWKTLRANWLFKHESFEPFLSAASFLFFIGLWGFLDFFVPSASKHRTFLSDDLSSWFGGTRIRDQALWYIAPLVIFDLIFPRRQLPESAPS+GRLVLEVVAAIAVYDAAFFAWHASLHSNPALYRRVHAKHHKCHVQRAPE  R
Sbjct:    1 MRLASLQVTSACRCLAVVAVGVLWWCQQPVEASLGVGWKTLRANWLFKHESFEPFLSAASFLFFIGLWGFLDFFVPSASKHRTFLSDDLSSWFGGTRIRDQALWYIAPLVIFDLIFPRRQLPESAPSLGRLVLEVVAAIAVYDAAFFAWHASLHSNPALYRRVHAKHHKCHVQRAPEVGR 180          
BLAST of mRNA_Ecto-sp6_S_contig96.18634.1 vs. uniprot
Match: A0A7S3YMJ6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YMJ6_HETAK)

HSP 1 Score: 266 bits (681), Expect = 1.920e-83
Identity = 126/262 (48.09%), Postives = 175/262 (66.79%), Query Frame = 2
Query:  344 RCLAVVAVGVLWWCQQPVEASLGVGWKTLRANWLFKHESFEPFLSAASFLFFIGLWGFLDFF-VPSASKHRTFLSDDLSSWFGGT-RIRDQALWYIAPLVIFDLIFPRRQLPESAPSVGRLVLEVVAAIAVYDAAFFAWHASLHSNPALYRRVHAKHHKCHVQRAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAGYDFPWQLHRLVPFGLLGGPPRHEEHHRRGTVYMQKFGTYLDSAFGFVP 1123
            R LAV A+  ++W    +++ +   W  LR  W FKH+SFEP L++ +F+F+I ++  +D    P   ++R   + D+  W     R+ ++ +WY+ PL++FD + PRR LPE  P++ +++L +VA + +YD  FF  H ++H  P LYR+VHA HH     RA +AVRHT  DG  DVACSI ALN  G HPL+R+++NVV+  L+TELHAGYD PW LHRL P GLLGGPPRH+ HH+ G +YMQKFGTYLD   GFVP
Sbjct:   57 RVLAVSAIFTVYWNYSYLDSKVAEFWHFLRVQWWFKHDSFEPLLASTAFVFYINVYRMVDSLNSPKILRYRIQKNQDMKPWKKSRERMYNEMMWYVGPLLVFDYLLPRRSLPEEPPTLLQIILSLVATVNLYDIFFFLCHTTVHKVPYLYRKVHAVHHTHPAVRACDAVRHTAADGGADVACSILALNLYGAHPLARSLHNVVLTYLLTELHAGYDAPWMLHRLAPAGLLGGPPRHDHHHKYGHLYMQKFGTYLDWLCGFVP 318          
BLAST of mRNA_Ecto-sp6_S_contig96.18634.1 vs. uniprot
Match: A0A6A7GA17_9CRUS (Cholesterol 25-hydroxylase (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GA17_9CRUS)

HSP 1 Score: 230 bits (586), Expect = 9.950e-70
Identity = 110/243 (45.27%), Postives = 156/243 (64.20%), Query Frame = 2
Query:  419 WKTLRANWLFKHESFEPFLSAASFLFFIGLWGFLDFFVPSASKHRTFLSDDLSSW----FGGTRIRDQALWYIAPLVIFDLIFPRRQLPESAPSVGRLVLEVVAAIAVYDAAFFAWHASLHSNPALYRRVHAKHHKCHVQRAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAGYDFPWQLHRLVPFGLLGGPPRHEEHHRRGTVYMQKFGTYLDSAFGFVPPAAS 1135
            W++ R  +++KH+SFEPF+  ++F      WG +D   P   K++ F +  +  W    F   RI+ + + Y+APL+IFD ++PRR+LP  + S GRL  EV   + +YDA FF  H  LH  P ++R +HA+HH     +A + +R +F +  ++V+CSI A+N  G HPLSRAVYN+VII L+ ELH GYD PW L  +VPFG++GG  RH+ HH  GTVY QKF TYLD+ FGFV   +S
Sbjct:   52 WESARTTFIWKHDSFEPFIVVSTFFLVFSFWGAIDKLCPQFHKYK-FHAHIVEDWKTFRFPVDRIKSEFIGYVAPLLIFDFLYPRRRLPADSVSFGRLWFEVTLCLLIYDALFFVAHWLLHIIPTVFRAIHARHHDMIPIKALDTIRLSFAEQIINVSCSIIAVNVSGSHPLSRAVYNIVIICLLVELHCGYDMPWMLQNVVPFGIIGGSVRHDRHHVVGTVYYQKFFTYLDNLFGFVEKKSS 293          
BLAST of mRNA_Ecto-sp6_S_contig96.18634.1 vs. uniprot
Match: A0A830HPD7_9CHLO (Fatty acid hydroxylase domain-containing protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HPD7_9CHLO)

HSP 1 Score: 205 bits (521), Expect = 5.550e-60
Identity = 103/260 (39.62%), Postives = 153/260 (58.85%), Query Frame = 2
Query:  329 VTSACRCLAVVAVGVLWWCQQPVEASLGVGWKTLRANWLFKHESFEPFLSAASFLFFIGLWGFLDF--FVPSASKHRTFLSDDLSSWFGGTRIRDQALWYIAPLVIFDLIFPRRQLPESAPSVGRLVLEVVAAIAVYDAAFFAWHASLHSNPALYRRVHAKHHKCHVQRAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAGYDFPWQLHRLVPFGLLGGPPRHEEHHRRGTVYMQKFGTYLD 1102
            +T + R L V A   +   +   +A +   W  LR  W F+H++FEP L+  SF F++ LW  +D   +    +++R   S+ +  W     +  + L Y+APL ++D + PRR LP  AP+    + +V+ ++ +YD  F  +H ++HS+P LYRRVHAKHH   V RA +AVR + ++  +DV+CSI AL   G HPLSRA++N+VI  LITELH+GY FPW    +VP+GL  GP +H  HH     Y  KF   L+
Sbjct:   13 ITVSVRVLIVAAFTTMCLRRNHADAFVQNAWDDLRVRWWFQHDTFEPVLATTSFAFWMALWYAVDLVAYAHIPTRYRLQTSESMHQWKPQGHVAQEVLLYLAPLAMYDHVKPRRVLPPDAPTALACLAQVMCSLLLYDCLFAIFHRAMHSHPVLYRRVHAKHHHNAVVRARDAVRVSALEQLVDVSCSILALKLTGSHPLSRAIHNIVITFLITELHSGYSFPWSFESVVPYGLYLGPTKHVLHHSVNAPYYAKFFAVLE 272          
BLAST of mRNA_Ecto-sp6_S_contig96.18634.1 vs. uniprot
Match: A0A1Y1I1Z9_KLENI (Cholesterol 25-hydroxylase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I1Z9_KLENI)

HSP 1 Score: 203 bits (517), Expect = 1.450e-59
Identity = 107/268 (39.93%), Postives = 161/268 (60.07%), Query Frame = 2
Query:  320 SLQVTSACRCLAVVAVGVLWWCQQPVEASLGVGWKTLRANWLFKHESFEPFLSAASFLFFIGLWGFLDFFVPSASKHRTFLSDDLSSWFGGTRIRDQALWYIAPLVIFDLIFPRRQLPESAPSVGRLVLEVVAAIAVYDAAFFAWHASLHSNPALYRRVHAKHHKCHVQ-RAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAGYDFPWQLHRLVPFGLLGGPPRHEEHHRRGTVYMQKFGTYLDSAFGFV 1120
            S      C CL + AV       +   A++   W T R+  L +H+SFEP ++  +F  +  +W  LD +VPS   ++  LS ++ +W      R +A++Y+APL++FD I+PRR+L +  PSV R+V +V+ A+ +YD  FF  H +LH  P L RR HA+HH      RA +A R   ++    V  +I +LN + CH LSR ++N+ I  ++TE+H+GYDFPW LHR+VPF L+GG  RH +HH +G  Y Q+F TYLD  + +V
Sbjct:    3 STNQARGCICLLIAAVAFY---HKSANAAVAAVWDTYRSIPLVQHDSFEPLVAVTAFFIWTRMWHVLDVYVPSLRVYKLHLSHNIKAWKLEGYPRWEAVYYLAPLLVFDWIYPRRKLDQPPPSVERVVFDVIGALLIYDLLFFFSHLALHKVPFL-RRFHARHHVMGGDMRACDATRAHPLEELALVTFAITSLNLLRCHFLSRFIFNITIGYMLTEVHSGYDFPWMLHRVVPFKLVGGSVRHGQHHAKGDRYYQQFFTYLDDTYEWV 266          
BLAST of mRNA_Ecto-sp6_S_contig96.18634.1 vs. uniprot
Match: A0A7S2UXV7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXV7_9STRA)

HSP 1 Score: 194 bits (493), Expect = 4.190e-57
Identity = 97/192 (50.52%), Postives = 122/192 (63.54%), Query Frame = 2
Query:  602 RDQALWYIAPLVIFDLIFPRRQL----PESAPSVGRLVLEVVAAIAVYDAAFFAWHASLHSNPA------------------LYRRVHAKHHKCHVQRAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAGYDFPWQLHRLVPFGLLGGPPRHEEHHRRGTVYMQKFGTYLDSAF 1111
            +++ +WYI PLV FDLI PRR L       +PS   ++ ++  ++  YD  FF  HA LH  P                   LYR +HAKHH     RA EAVRHTF+DGSM V CSI AL   G HPL+RA++N+V+IGL+TELHAGYD PW LH ++P G+LGGPPRH++HHR GT Y Q+ GTYLD  F
Sbjct:    2 QEELIWYIFPLVAFDLILPRRHLLLENHADSPSALVVLWQLACSLFWYDVLFFFLHAFLHLGPGFLWGSGSKSGGVKESVGWLYRTIHAKHHSQPHLRACEAVRHTFLDGSMTVGCSILALKLAGSHPLARALHNIVLIGLLTELHAGYDLPWALHNVMPAGILGGPPRHDDHHRTGTRYYQQLGTYLDWFF 193          
BLAST of mRNA_Ecto-sp6_S_contig96.18634.1 vs. uniprot
Match: A0A0G4I189_9ALVE (Fatty acid hydroxylase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I189_9ALVE)

HSP 1 Score: 194 bits (493), Expect = 1.970e-55
Identity = 108/284 (38.03%), Postives = 162/284 (57.04%), Query Frame = 2
Query:  317 ASLQVTSACRCLAVVAVGVLWWCQQPVEASLGVGWKTLRANWLFKHESFEPFLSAASFLFFIGLWGFLDFFVPSASKHRTFLSDDLSSWFGGTRIRDQ-------ALWYIAPLVIFDLIFPRRQLPESAPSVGRLVLEVVAAIAVYDAAFFAWHASLHSNPALYRRVHAKHHKCHVQRAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAGYDFPWQLHRLVPFGLLGGPPRHEEHHRRGTVYMQKFGTYLDSAFGFVPPAASCGRL 1147
            A+LQ++S  R + +V +   +  +Q ++  L   W +LR     KH+S EP  S   F F++ L+ F D + P   + R    DD      G  I+ Q        + YI PL+ FD++FPRR+LPE  PS   L+  V A++ +YD  FF  H   H  P L++ +H +HH+    +A E VR +F+DG++ V  +I ALN +  HPL+R +++  I  L+TE+H+GYDFPW LHR++P G++ GP +HE HH  GT Y Q+F  YLD+ FG  P     G +
Sbjct:   11 AALQLSS--RLVVLVVLVTCFLHRQRLDDLLDSFWGSLRRQPWIKHDSCEPLFSTVVFFFWVNLFRFFDLYCPFLWRFRYNQRDDPVK--EGFLIKTQDPHGVLAVVGYIVPLLAFDVLFPRRRLPERGPSFFGLLGSVAASLWLYDLLFFFVHLGFHKIP-LFQGIHRRHHQEGRMKASEVVRLSFLDGALQVGANILALNLLRLHPLARLLHDAAITFLLTEIHSGYDFPWALHRILPEGVMAGPEKHELHHILGTGYFQQFFCYLDNLFGLFPEEKRAGDI 289          
BLAST of mRNA_Ecto-sp6_S_contig96.18634.1 vs. uniprot
Match: A0A7S2S5J1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S5J1_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.930e-53
Identity = 96/247 (38.87%), Postives = 147/247 (59.51%), Query Frame = 2
Query:  389 QPVEASLGVGWKTLRANWLFKHESFEPFLSAASFLFFIGLWGFLDFFVPSAS-----KHRTFLSDDLSSWFGGTRIRDQALWYIAPLVIFDLIFPRRQLPESAPS-VGRLVLEVVAAIAVYDAAFFAWHASLHSNPALYRRVHAKHHKCHVQRAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAGYDFPWQLHRLVPFGLLGGPPRHEEHHRRGTVYMQKFGTYLDSAF 1111
            + +++++   W  ++    F+H++FEP ++  SF  +I  +  LD  +P        K+R     D    FG  +++   L Y+  L  FD ++PRR+LP++ P   G+++L +V A+ VYD  FF  H ++H    L R  H KHH      + E +RH+F+DGS+ V C+I ALN +  HP SR +YN+V+  ++TE+H GYD PW LH ++PFGLLGG  RHEEHH  G  Y Q+F TYLD+ +
Sbjct:    1 ESIDSAVERSWSWIKEKQWFQHDTFEPLVATLSFAVWIHAFRILDL-MPLGQYIIDPKYRAL---DARVGFG-VKVKS-GLVYLGTLFTFDFLYPRRKLPDTCPGGAGKVLLHIVLALFVYDFLFFHIHVAMHKVEGL-RSFHKKHHSVRGLHSTEVLRHSFVDGSLQVMCNIAALNLLKLHPYSRTLYNIVVTYMLTEIHCGYDLPWMLHNVIPFGLLGGSVRHEEHHITGRRYFQQFFTYLDATY 240          
BLAST of mRNA_Ecto-sp6_S_contig96.18634.1 vs. uniprot
Match: A0A7S0SGA9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SGA9_9CHLO)

HSP 1 Score: 169 bits (427), Expect = 1.020e-45
Identity = 102/285 (35.79%), Postives = 141/285 (49.47%), Query Frame = 2
Query:  287 PRCVHRSMRLASLQVTSACRCLAVVAVGVLWWCQQPVEASLGVGWKTLRANWLFKHESFEPFLSAASFLFFIGLWGFLDF-------------FVPSASKHRTFLSDDLSSWFGGTRIRDQALWYIAPLVIFDLIFPRRQLPESAPSVGRLVLEVVAAIAVYDAAFFAWHASLHSNPALYRRVHAKHHKCHVQRAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAGYDFPWQLHRLVPFGLLGGPPRHEEHHRRGTVYMQKFGTYLD 1102
            P    RS+RL        CR + V+ V  +    + ++A +   W   R   L K ++FEP L    F  F+  W  +D                P   + +T        W        + L Y+ PL+ FD ++PRR LP  AP+V  +  EV+  + +YDA F A H  +H  P L++RVHAKHH     RA E  R +  +   D  CSI AL     HPLSRAVYNVVI+ L+ E+H+GYD PWQL  +VP G++ G  +H EHH  G     KF ++LD
Sbjct:    9 PEGFERSVRL--------CRLVCVMLVAGVCAHAEQLDACVADFWAWARETRLMKWDTFEPALVMTVFTIFLLSWQSIDLGRWGSHAWSARYRLQPGGPEGKTHAEHSRKIWKAEGYGAQEFLLYLVPLLAFDWLYPRRVLPTQAPTVAGMAAEVLGTLVLYDALFTASHTVMHGVPWLFKRVHAKHHLHRHVRAREIFRLSAPEEVADTGCSILALTLTRAHPLSRAVYNVVIVFLLCEIHSGYDMPWQLCNVVPGGVVMGSRQHVEHHATGRGAYAKFFSFLD 285          
BLAST of mRNA_Ecto-sp6_S_contig96.18634.1 vs. uniprot
Match: A0A7S2MS10_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MS10_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.460e-41
Identity = 80/185 (43.24%), Postives = 110/185 (59.46%), Query Frame = 2
Query:  575 SSWFGGTRIRDQALWYIAPLVIFDLIFPRRQLPES---APSVGRLVLEVVAAIAVYDAAFFAWHASLHSNPALYRRVHAKHHKCHVQRAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAGYDFPWQLHRLVPFGLLGGPPRHEEHHRRGTVYMQKFGTYLDSAFGFV 1120
            S W  G  I +  L Y+  L I+D+  PRR    +   AP+   +  EV+ ++ +YD  FF  H  +H  P LY+ VHAKHH+    RA + V  +F++  +DV  SIFALN +GCHP+SR +YN++I  ++TELH G+ FPW    +VPFGL  G   H  HHR G  Y QKF  ++D  FGFV
Sbjct:   51 SKWHMGFWIFELPL-YVLXLYIWDICIPRRAAKIAIWGAPTALGICKEVMGSLLLYDLGFFVCHYLMHKVPLLYKYVHAKHHRSSEVRASDIVNLSFVEEIVDVGISIFALNFLGCHPISRTLYNIIITFMLTELHCGFAFPWTPQFVVPFGLATGSKGHHYHHRNGYHYYQKFFCHVDRLFGFV 234          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5E5_ECTSI2.540e-12398.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3YMJ6_HETAK1.920e-8348.09Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6A7GA17_9CRUS9.950e-7045.27Cholesterol 25-hydroxylase (Fragment) n=1 Tax=Hiro... [more]
A0A830HPD7_9CHLO5.550e-6039.62Fatty acid hydroxylase domain-containing protein n... [more]
A0A1Y1I1Z9_KLENI1.450e-5939.93Cholesterol 25-hydroxylase n=1 Tax=Klebsormidium n... [more]
A0A7S2UXV7_9STRA4.190e-5750.52Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4I189_9ALVE1.970e-5538.03Fatty acid hydroxylase domain-containing protein n... [more]
A0A7S2S5J1_9STRA1.930e-5338.87Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S0SGA9_9CHLO1.020e-4535.79Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A7S2MS10_9STRA1.460e-4143.24Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:344479..347444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score365.5
Seed ortholog evalue2.2e-98
Seed eggNOG ortholog2880.D7G5E5
Model size1159
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG OGs2ER8Q@1,2SU3G@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_010750.1
Cds size852
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18634.1prot_Ecto-sp6_S_contig96.18634.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 344786..347444 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350589.8523319-UTR-Ecto-sp6_S_contig96:344478..3447851682350589.8523319-UTR-Ecto-sp6_S_contig96:344478..344785Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 344479..344785 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350589.8696694-CDS-Ecto-sp6_S_contig96:344785..3449441682350589.8696694-CDS-Ecto-sp6_S_contig96:344785..344944Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 344786..344944 +
1682350589.8901927-CDS-Ecto-sp6_S_contig96:345674..3458451682350589.8901927-CDS-Ecto-sp6_S_contig96:345674..345845Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 345675..345845 +
1682350589.900932-CDS-Ecto-sp6_S_contig96:346290..3464911682350589.900932-CDS-Ecto-sp6_S_contig96:346290..346491Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 346291..346491 +
1682350589.9108565-CDS-Ecto-sp6_S_contig96:346872..3470121682350589.9108565-CDS-Ecto-sp6_S_contig96:346872..347012Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 346873..347012 +
1682350589.9209018-CDS-Ecto-sp6_S_contig96:347263..3474441682350589.9209018-CDS-Ecto-sp6_S_contig96:347263..347444Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 347264..347444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18634.1

>prot_Ecto-sp6_S_contig96.18634.1 ID=prot_Ecto-sp6_S_contig96.18634.1|Name=mRNA_Ecto-sp6_S_contig96.18634.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=284bp
MRLASLQVTSACRCLAVVAVGVLWWCQQPVEASLGVGWKTLRANWLFKHE
SFEPFLSAASFLFFIGLWGFLDFFVPSASKHRTFLSDDLSSWFGGTRIRD
QALWYIAPLVIFDLIFPRRQLPESAPSVGRLVLEVVAAIAVYDAAFFAWH
ASLHSNPALYRRVHAKHHKCHVQRAPEAVRHTFIDGSMDVACSIFALNAV
GCHPLSRAVYNVVIIGLITELHAGYDFPWQLHRLVPFGLLGGPPRHEEHH
RRGTVYMQKFGTYLDSAFGFVPPAASCGRLLSK*
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mRNA from alignment at Ecto-sp6_S_contig96:344479..347444+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18634.1 ID=mRNA_Ecto-sp6_S_contig96.18634.1|Name=mRNA_Ecto-sp6_S_contig96.18634.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2966bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:344479..347444+ (Ectocarpus species6 EcLAC_371)
GGCACAGCAGTCAGTTGGGTTGTGGTGTTGGGAGCCGGAGAAGCTGGGAG AACCTGGAGCACTCGTTCAATGAAACACGGTGCCCCGTTTTCCTGCCGCA CTCCTCCGTACCAGCACAAATTCCGCCGCCTGTCCCTTCCTCTCCATCTT CGGAAATCCATAAATCCATGACCGTGGTACGTACATGCCATCTCCGCCAC CCTGATCCTACTTCTCTCCCCTAGCTGTGCTGCTTCACCACTGTTTAGGT AGCAGTACAGCGGGTTTGTGGGTAGCAGTATAGCTCCCTCGGTGCGTGCA TCGCAGCATGCGCTTGGCGAGCCTTCAAGTGACATCTGCGTGCAGATGCC TTGCTGTTGTCGCCGTCGGCGTCCTGTGGTGGTGTCAGCAGCCGGTTGAA GCCAGCCTGGGAGTGGGATGGAAGACACTACGCGCGAACTGGTTGTTTAA GCACGAGTCGTTCGAGGTGCGTGCGTTCAGAATACCGCTCGCTGTGAAGC TTGACATGACGCATTGTTGGTGTTGTTTAGGGTGTTGTTATAGGGAATTG TGTTTGGTTGTCTTCATCCGCACATAAATGATGGAGTCCTACAGAGCTCC CGCAAGTGTAGAGAGACCCCAGGCAGACAGCAGTCAGACCTCACTGCTGT GACATATCGGGCAGACAGAACAACGTGTTTGCAGTATTGTTTTCCTGCTC GGCACGCGGTGACAAGCGTCTAAAGTTATCCAACGAACTTTATCTCCCAC ACATGAAGACACATGCACCTCGCGCGACCCGAATACTTCAACTGCTGTGG CGACGCTTCGGCAACGGATCATCGACTGAAGCATGGAAAACGGTTGATTT TTGGTGGCCTCTTTGAGCTGCATGGGTCGAATCGATGTGGGGAAACTAAA CGTCGCTCCTGGATTGTGCCCCAACTTCACGATCGATCGTGGAATGTATT TGGCGCGGCTACTTCTATTGCAGTGTGTATATAGCCGAAAACTACAACTA TACAGCGAGTGACCCAACGATGGAAAGCAAGGTGACGTGCGAGGTTCTGT AACATGTTGATCACTTTGGATCGGATTTCTGGCTGGCCGGCTAGATTGTA GTCGGCATGATGCGCAGCTACTGAAAATTGACTGCATCATGTCACCGCTC GCTGGATCCGCTTGCCTGCTCCGCGCTGCTGTTGCTGAGACGCCAGCCGT TTCTGTCGGCGGCATCGTTCCTGTTCTTCATTGGATTGTGGGGGTTCTTG GACTTCTTCGTACCCTCGGCAAGCAAGCACCGCACGTTTTTATCGGACGA TTTGTCGTCGTGGTTCGGTGGCACCCGTATCAGAGACCAGGCCTTGTGGT ATATCGCACCACTGGTGGTGAGAGGAACGTGAACGAACGGCAAAGAAAGG TGGCGATAGCGTGTAAAGTACCATAGAAGGCATAGATAGATAGGTTGACC TCAATTTGCACGAGGTGGGCAACCAAAACTACATGTGACGTCCTCCCACC AAGCTGCCGCCAACTTCCGCGCGCTGCTTGGTCTTAGCTTTCGGCTGTAT TTTTCCAAAATATGTGAGCCTAACTTGTCCCCTTGTTGTATTGTAATGCT CGACATTTTGTTGCCGACAGTTACTCATTCCTTTTCTTCTGTGAGGAGAA TGGAATCAATCGCCAGTGAACAGCCAAGCGTTCTGTCTCCCGCGATCGAA CTGTTCGACTACGATGGCAACCGATGTCTTCTGGTTACATAGCATAGTCT AGGTTGAACTTTCCTCCACCGGGAATCTTCGCATGCCCGTTCGTTCCTCT CTACGCCGCCAGATATTTGATCTAATCTTTCCCCGGCGACAACTCCCCGA GTCAGCCCCCTCCGTGGGGAGGCTTGTCCTCGAGGTGGTGGCCGCCATAG CAGTCTACGACGCCGCTTTCTTCGCCTGGCACGCCAGCCTGCATAGCAAC CCGGCCCTTTACCGTCGAGTGCACGCGAAGCACCACAAGTGTCACGTTCA GCGGGCTCCCGAGGTTGGAAGACTTGTTTATGACTGCGAGTTGGGGTGAG GGTGGGCGCTCACCAGTCTCAATGTCAAGTTGCCGAAATAGGTCGGAGAT GTTGATCATGCTGAGCTTGCCTCCGTTTTGTGTGCTGTTCGATCGACCGG TCGGTGTTTCAAACGCTGCTTTTTGGACCAAGGAGGTTACTCCAAGGGAG TTCCAGACATTCATGTGCGTGGGCGCCTGTACTACTTATGACGATGTTTC CCTTTGCCCCCGTTGCACACAAGCAACGAAAAAATGATTCTCCCGCCTGC TTGCAGGCTACCTACGCCCAACCATCCGTCTGATATATCCACCCGCTTCC CGTCGCATGCGTCCCGGCGGCCCTCAACACACATACGCATGCAGGCCGTC CGCCACACCTTCATCGACGGGTCCATGGACGTGGCCTGCTCCATTTTCGC GCTTAACGCCGTTGGGTGCCATCCCCTCTCTAGGGCTGTATACAACGTGG TCATCATAGGATTGATTACCGAGCTGCACGCAGGGTGAGAAGGGAGCAGC GTACCACAGGAGACTTTTGGGGGGATACCAATAGCAGCAGCAATGATCGC GAACCTAGATTTCGTTGCCCAACATTGGAGGAGCAGCGCGCTTCATTCAG CAGTTTTTGGCGGCGTTCACCTATCTATCTGTAAACCCTGAGTCCACGTA CTATCCTGCCCGTCCACCGCGCTTGCTTCTCAATTGCTACCGCCTTGCAT TATTGCCTTCTTCCTGTATTGTGTGCCGAGCACAGATATGATTTTCCGTG GCAGCTGCACCGGCTTGTTCCATTCGGATTGCTGGGGGGGCCGCCTCGGC ATGAAGAACACCATCGCCGTGGAACGGTGTACATGCAAAAGTTCGGCACG TATCTGGACAGCGCATTTGGCTTCGTTCCACCAGCCGCATCGTGCGGAAG ACTACTGTCCAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:344479..347444+

>mRNA_Ecto-sp6_S_contig96.18634.1 ID=mRNA_Ecto-sp6_S_contig96.18634.1|Name=mRNA_Ecto-sp6_S_contig96.18634.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=852bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:344479..347444+ (Ectocarpus species6 EcLAC_371)
ATGCGCTTGGCGAGCCTTCAAGTGACATCTGCGTGCAGATGCCTTGCTGT
TGTCGCCGTCGGCGTCCTGTGGTGGTGTCAGCAGCCGGTTGAAGCCAGCC
TGGGAGTGGGATGGAAGACACTACGCGCGAACTGGTTGTTTAAGCACGAG
TCGTTCGAGCCGTTTCTGTCGGCGGCATCGTTCCTGTTCTTCATTGGATT
GTGGGGGTTCTTGGACTTCTTCGTACCCTCGGCAAGCAAGCACCGCACGT
TTTTATCGGACGATTTGTCGTCGTGGTTCGGTGGCACCCGTATCAGAGAC
CAGGCCTTGTGGTATATCGCACCACTGGTGATATTTGATCTAATCTTTCC
CCGGCGACAACTCCCCGAGTCAGCCCCCTCCGTGGGGAGGCTTGTCCTCG
AGGTGGTGGCCGCCATAGCAGTCTACGACGCCGCTTTCTTCGCCTGGCAC
GCCAGCCTGCATAGCAACCCGGCCCTTTACCGTCGAGTGCACGCGAAGCA
CCACAAGTGTCACGTTCAGCGGGCTCCCGAGGCCGTCCGCCACACCTTCA
TCGACGGGTCCATGGACGTGGCCTGCTCCATTTTCGCGCTTAACGCCGTT
GGGTGCCATCCCCTCTCTAGGGCTGTATACAACGTGGTCATCATAGGATT
GATTACCGAGCTGCACGCAGGATATGATTTTCCGTGGCAGCTGCACCGGC
TTGTTCCATTCGGATTGCTGGGGGGGCCGCCTCGGCATGAAGAACACCAT
CGCCGTGGAACGGTGTACATGCAAAAGTTCGGCACGTATCTGGACAGCGC
ATTTGGCTTCGTTCCACCAGCCGCATCGTGCGGAAGACTACTGTCCAAGT
GA
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