mRNA_Ecto-sp6_S_contig96.18633.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18633.1
Unique NamemRNA_Ecto-sp6_S_contig96.18633.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig96.18633.1 vs. uniprot
Match: D7G5E6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5E6_ECTSI)

HSP 1 Score: 422 bits (1085), Expect = 7.650e-148
Identity = 233/247 (94.33%), Postives = 233/247 (94.33%), Query Frame = 3 
Query:   75 MSSLTAISVREGEVALAKLPEQVGKMQALLEAEFAYTSLADIESGFKQLLTSSGGSATENANMGTLLSTVRNEVTQTMSILLALKRWIRVQVPKIEDGNNFGVSVQLDVAKGIDELTTPVASSLGEMPSYFESRASAWDKIGNKKSKESKTSSSASKDTGGKARDDGDSSKTSESTSTEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMYSF 815
            MSSLTAISVREGEVALA LPEQVGKMQALLEAEFAYTSLADIESGFKQLLTSSGGSATENANMG LLSTVRNEVTQTMSILLALKRWIRVQVPKIEDGNNFGVSVQLDVAKGIDELTTPVASSLGEMP YFESRASAWDKIGNKKSKESKTSSSASKDTGGK   DGDS        TEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMYSF
Sbjct:    1 MSSLTAISVREGEVALANLPEQVGKMQALLEAEFAYTSLADIESGFKQLLTSSGGSATENANMGALLSTVRNEVTQTMSILLALKRWIRVQVPKIEDGNNFGVSVQLDVAKGIDELTTPVASSLGEMPGYFESRASAWDKIGNKKSKESKTSSSASKDTGGK---DGDSXXXXXXXXTEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMYSF 244
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BLAST of mRNA_Ecto-sp6_S_contig96.18633.1 vs. uniprot
Match: A0A835YYY9_9STRA (Proteasome activator pa28 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYY9_9STRA)

HSP 1 Score: 161 bits (407), Expect = 4.730e-45
Identity = 97/236 (41.10%), Postives = 143/236 (60.59%), Query Frame = 3 
Query:   75 MSSLTAISVREGEVALAKLPEQVGKMQALLEAEFAYTSLADIESGFKQLLTSSGGSATENANMGTLLSTVRNEVTQTMSILLALKRWIRVQVPKIEDGNNFGVSVQLDVAKGIDELTTPVASSLGEMPSYFESRASAWDKIGNKKSKESKTSSSASKDTGGKARDDGDSSKTSESTSTEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKG 782
            M +L   S  EGE A   +P  V  +   L + FAYT L+ IES F   + ++G     N  +  LL  V++++  +++ILLAL RWI+V VP IEDGNNFGV VQ +VAK I E  T + ++  ++P Y E RA AW+K+  K+   +K S+S S  TGGK   +GD +KT+ + S +  +S S   PD    L+ +DV+ +V LH ++  ARD+++  ADM+EKN+ K+  PKG
Sbjct:    1 MEALKEQSKSEGEAAREVVPTFVAHLNESLASNFAYTDLSQIESSFTAAVAAAGSVPATNDKLAKLLPAVQSDLATSINILLALYRWIQVHVPIIEDGNNFGVGVQQEVAKLIAESVTKLEAAFDKLPEYHEKRAGAWEKLAAKEDSTAKKSTSKSTVTGGK---EGDENKTTVTESNDTSSSTSRQIPDGLRALVTMDVRCYVQLHKSIQLARDTVLFCADMVEKNVTKIKAPKG 233
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BLAST of mRNA_Ecto-sp6_S_contig96.18633.1 vs. uniprot
Match: A0A8K1CBJ1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBJ1_PYTOL)

HSP 1 Score: 124 bits (310), Expect = 1.180e-30
Identity = 79/246 (32.11%), Postives = 134/246 (54.47%), Query Frame = 3 
Query:   75 MSSLTAISVREGEVALAK-LPEQVGKMQALLEAEFAYTSLADIESGFKQLLTSSGGSATENANMGTLLSTVRNEVTQTMSILLALKRWIRVQVPKIEDGNNFGVSVQLDVAKGIDELTTPVASSLGEMPSYFESRASAWDKIGNKKSKESKTSSSASKDTGGKARDDGDSSKTSESTSTEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMY 809
            M +   +  RE E  L   + +++ ++Q LL AEF   ++AD+ +     +     +  ++  +  L+  V   +   +S    L +WI + VPK+ DGNNFGV VQL V K I + T  +  +   +P Y   RA+A +K+ +K+SKE   +++ ++ TGGK   +GD  K+  S+  +E ++ ++   D    ++A+DVKWF +L  TL   RD+  +  D +EKN +K+LRP+     G GMY
Sbjct:    1 MEAYKELVTREAEALLQSGITQRLEEVQKLLVAEFQSRAIADVRATSTTSMQQQLPTIQQHPQLPALVGAVATHLEHALSDFQKLSQWISLLVPKVADGNNFGVEVQLIVLKEIKDATDKLQKAWDSLPDYHSQRATAIEKLNDKRSKEKTVTTTVTESTGGK---EGDEKKSVVSSVDKESSTSAAPVDDWIAQVVAIDVKWFYNLARTLEIVRDAYAIVYDRVEKNKDKILRPRNQERAGYGMY 243
[Close]
BLAST of mRNA_Ecto-sp6_S_contig96.18633.1 vs. uniprot
Match: K3WA13_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WA13_GLOUD)

HSP 1 Score: 120 bits (301), Expect = 2.500e-29
Identity = 70/223 (31.39%), Postives = 130/223 (58.30%), Query Frame = 3 
Query:  120 LAKLPEQVGKMQALLEAEFAYTSLADIESGFKQLLTSSGGSATENANMGTLLSTVRNEVTQTMSILLALKRWIRVQVPKIEDGNNFGVSVQLDVAKGIDELTTPVASSLGEMPSYFESRASAWDKIGNKKSKESKTSSSASKDTGGKARDDGDSSKTSESTSTEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTN 788
            + +LP+++  + AL++  F   + + + +  KQ +T++ G    +A +  L++ V +E+ Q +++L  L +WI++ VPKI DGNNFGV VQ      + E           +  Y+  RA+A +K+ +K +KES  S++ +  TGGK   DGD +K+  ++  +E  +  +   D  ++++A+D+KW+ +L  TL   RD   + AD+IEKN +K++ P+G +
Sbjct:   16 IEELPQRLAHVHALVQQHFQARTPSAVRATLKQSVTATRGKVDASATLDALIAVVGDEIEQVLTVLAQLSQWIQLLVPKIADGNNFGVEVQKLAYVHVKESIATWQKQWDALADYYNQRATAVEKVNDKIAKESSKSTTVTATTGGK---DGDENKSVTTSLDKETATSGTVVDDWVSYIVAVDLKWYFNLARTLEAIRDQYAVTADIIEKNKDKIVLPRGNS 235
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BLAST of mRNA_Ecto-sp6_S_contig96.18633.1 vs. uniprot
Match: A0A5D6XIL9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XIL9_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.910e-28
Identity = 75/228 (32.89%), Postives = 124/228 (54.39%), Query Frame = 3 
Query:  105 EGEVALAKLPEQVGKMQALLEAEFAYTSLADIESGFKQLLTSSGGSATENANMGTLLSTVRNEVTQTMSILLALKRWIRVQVPKIEDGNNFGVSVQLDVAKGIDELTTPVASSLGEMPSYFESRASAWDKIGNKKSKESKTSSSASKDTGGKARDDGDSSKTSESTSTEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTN 788
            + E  LA+ P +V  +QAL+   FA    + + +       +S G    NA++  L + V +E+   ++ L  L RW+++ VPK+ DGNNFGV VQ    + + E           +  Y   RA+A +K+ +K +KE  TS++ +  TGGK   D D +KT   TS +E  + ++   D A  ++A+DVKW+ +L  TL   RD   +  D++EKN +K+L P+G++
Sbjct:   11 DAERTLAEFPRRVEHVQALVTQHFAQRQPSAVRATLAAAAAASSGQVRGNASLAALAAVVADEIELVLAALAQLSRWLQLLVPKVADGNNFGVEVQKLALEHLKESAAGWQKHWDALAEYHSQRAAAAEKLNDKVAKEKATSATTTATTGGK---DADETKTVTMTSEKETATTAAPVEDWAAFVVAVDVKWYFNLARTLEAVRDQYAVTFDIVEKNRDKILLPRGSS 235
[Close]
BLAST of mRNA_Ecto-sp6_S_contig96.18633.1 vs. uniprot
Match: A0A485KK80_9STRA (Aste57867_8360 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK80_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.320e-27
Identity = 76/230 (33.04%), Postives = 127/230 (55.22%), Query Frame = 3 
Query:  120 LAKLPEQVGKMQALLEAEFAYTSLADIESGFKQLLTSSGGSATENANMGTLLSTVRNEVTQTMSILLALKRWIRVQVPKIEDGNNFGVSVQLDVAKGIDELTTPVASSLGEMPSYFESRASAWDKIGNKKSKESKTSSSASKDTGGKARDDGDSSKTSESTSTEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMY 809
            LA +P+++  +  LL +EF   + + + + F   +T+    A  N ++  L++ V +E+   +  L  L+RWI++ +P++ DGNNFGV VQ  V   I    T +  S   M  Y+  RA+A++K   KKS ++K ++S + + GGK   DG+ SK S   S++E +SES   PD   +++A+DVKW+ +L  TL    D      D +EKN  K+  P+G   +   M+
Sbjct:   16 LANIPKRMAHITELLSSEFQAQTPSQLTTAFAPGVTAQ---AATNPHLCRLVTLVLDEIHVAIQELQRLERWIQLLIPRVADGNNFGVEVQKTVQLQISASRTALQKSWDGMTDYYWQRATAYEKFAAKKSTDTKVTNSTTHEEGGK---DGNVSKKSRIESSDESSSESRVIPDLIAYVVAVDVKWYFNLQRTLESIGDHYAFTLDAVEKNSSKIKLPRGHGERSMNMF 239
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BLAST of mRNA_Ecto-sp6_S_contig96.18633.1 vs. uniprot
Match: A0A7S2A2H1_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A2H1_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.960e-26
Identity = 80/240 (33.33%), Postives = 131/240 (54.58%), Query Frame = 3 
Query:   96 SVREGEVALAKLPEQVGKMQALLEAEFAYTSLADIESGFKQLLTSSGGSATENANMGTLLSTVRNEVTQTMSILLALKRWIRVQVPKIEDGNNFGVSVQLDVAKGIDELTTPVASSLGEMPSYFESRASAWDKIGNKKSKESKTSS-SASKDTGGKARDDGDSSKTSESTSTEEKTSESSFAP-DSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMY 809
            S+++ E  L+   + +  ++    + F +  L+  +  F+  LT++G  +  N+ +   +  VR+ ++  +  +  L+R+I + VP++EDGNNFGV+VQ+ ++K + E     +  L E P Y+ +RA A DK+G  K+  S+T + S SK TGG+    GD  KTS S   E KTS          NH++A+DVK++  L   L+   +  +   D +EKN EKLL PKG      GMY
Sbjct:   20 SIKDAEAILSDGKKTLSSIEGAFTSLFPHEELSKAQKAFEDDLTANGLDSA-NSLLTAAIPAVRDMLSSGIMNIHTLERYIFLHVPQMEDGNNFGVTVQMTISKFLKETRDEWSKLLEEFPKYYSTRADAVDKLGLSKTSSSETKTESKSKSTGGEK---GDEEKTSNSVVNETKTSNGQKTDVHRLNHVVAIDVKFYGDLRAALMTLFNGYITILDNMEKNQEKLLSPKGGGGGAMGMY 255
[Close]
BLAST of mRNA_Ecto-sp6_S_contig96.18633.1 vs. uniprot
Match: A0A4D9DB27_9STRA (PA28_beta domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DB27_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.400e-26
Identity = 75/229 (32.75%), Postives = 123/229 (53.71%), Query Frame = 3 
Query:  129 LPEQVGKMQALLEAEFAYTSLADIESGFKQLLTSSGGSATENANMGTLLSTVRNEVTQTMSILLALKRWIRVQVPKIEDGNNFGVSVQLDVAKGIDELTTPVASSLGEMPSYFESRASAWDKIGNKKSKESKTSSSASKDTGGKARDDGDSSKTSESTSTEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMYSF 815
            +P ++ +++A+L+A     S++++       +T S  +   NA +   L T R+ + +T+  L  +  W++++VPK+ DG NFGV+V L+V K I+     +   L E+P+YF  RASA +K+  + S + K S S S  TGGK   DGD +K SES + E+   +S F PD   HL+ALD K+F      +     + +   D++EKN   L  P+G       +  F
Sbjct:   21 MPARIAEVEAVLQAVPFGKSVSEV-------MTHSRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKVEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGK---DGDETKGSESQTEEKSIKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF 239
[Close]
BLAST of mRNA_Ecto-sp6_S_contig96.18633.1 vs. uniprot
Match: A0A6A3F8F5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3F8F5_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.920e-26
Identity = 74/231 (32.03%), Postives = 123/231 (53.25%), Query Frame = 3 
Query:  108 GEVALAKLPEQVGKMQALLEAEFAYTSLADIESGFKQLLTSSGGSATENANMGTLLSTVRNEVTQTMSILLALKRWIRVQVPKIEDGNNFGVSVQLDVAKGIDELTTPVASSLGEMPSYFESRASAWDKIGNKKSKESKTSSSASKDTGGKARDDGDSSKTSESTSTEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGG 800
            G   L++LP++V  +QAL++   A  S + + + F Q + ++  +   N N+ +LL+ V +EV Q +S++  L+ WI++QVPK+EDGNNFGV VQ      + E       +   +  Y  +RASA +K+  K S E+                DGD  K+  +   ++  + S+ A D+   ++ LDVKW+ +L   L   RD   + +D+I KN EK+  P+G N + G
Sbjct:   12 GAALLSELPQRVAHVQALVQQHAAERSASAVRAKFAQAVLAAPSAVGSNGNVQSLLAVVGDEVAQLLSVIAQLQLWIQLQVPKVEDGNNFGVEVQKYAFVQLKEALDKWQKTWDSLADYSSARASAVEKLNAKASSETXXXXXXXXXX---XXXDGDEEKSVTAKVDKQSNNGSNAAEDAVAAVVELDVKWYFNLVRALEGVRDQYAVTSDLISKNKEKIELPRGKNDRAG 239
[Close]
BLAST of mRNA_Ecto-sp6_S_contig96.18633.1 vs. uniprot
Match: W7U0E4_9STRA (Proteasome activator subunit 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0E4_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.050e-25
Identity = 75/229 (32.75%), Postives = 121/229 (52.84%), Query Frame = 3 
Query:  129 LPEQVGKMQALLEAEFAYTSLADIESGFKQLLTSSGGSATENANMGTLLSTVRNEVTQTMSILLALKRWIRVQVPKIEDGNNFGVSVQLDVAKGIDELTTPVASSLGEMPSYFESRASAWDKIGNKKSKESKTSSSASKDTGGKARDDGDSSKTSESTSTEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMYSF 815
            +P ++ +++A+L+A       A       +++T S  +   NA +   L T R+ + +T+  L  +  W++++VPK+ DG NFGV+V L+V K I+     +   L E+P+YF  RASA +K+  + S + K S S S  TGGK   DGD +K SES + E+   +S F PD   HL+ALD K+F      +     + +   D++EKN   L  P+G       +  F
Sbjct:  102 MPARIAEVEAVLQA-------APFGKSVSEVMTHSRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGK---DGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF 320
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5E6_ECTSI7.650e-14894.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YYY9_9STRA4.730e-4541.10Proteasome activator pa28 n=1 Tax=Tribonema minus ... [more]
A0A8K1CBJ1_PYTOL1.180e-3032.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WA13_GLOUD2.500e-2931.39Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XIL9_9STRA1.910e-2832.89Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A485KK80_9STRA1.320e-2733.04Aste57867_8360 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S2A2H1_9STRA3.960e-2633.33Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A4D9DB27_9STRA5.400e-2632.75PA28_beta domain-containing protein n=1 Tax=Nannoc... [more]
A0A6A3F8F5_9STRA5.920e-2632.03Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
W7U0E4_9STRA1.050e-2532.75Proteasome activator subunit 1 n=1 Tax=Nannochloro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:338420..344490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score424.5
Seed ortholog evalue3.5e-116
Seed eggNOG ortholog2880.D7G5E6
Preferred namePSME3
Model size818
KEGG rclassRC00062,RC00189,RC00676,RC01052
KEGG koko:K00276,ko:K06698
KEGG ReactionR02382,R02529,R02613,R03139,R04027,R04300,R06154,R06740
KEGG Pathwayko00260,ko00350,ko00360,ko00410,ko00950,ko00960,ko01100,ko01110,ko03050,ko04612,ko05160,map00260,map00350,map00360,map00410,map00950,map00960,map01100,map01110,map03050,map04612,map05160
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0002039,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0007346,GO:0008047,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010564,GO:0010604,GO:0010646,GO:0010648,GO:0010941,GO:0010950,GO:0010952,GO:0016504,GO:0016579,GO:0019222,GO:0019538,GO:0023051,GO:0023057,GO:0030162,GO:0030234,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0036211,GO:0042176,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051726,GO:0052547,GO:0052548,GO:0060255,GO:0060548,GO:0061133,GO:0061134,GO:0061135,GO:0061136,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0097371,GO:0098772,GO:1901564,GO:1901987,GO:1901990,GO:1902494,GO:1902806,GO:1903050,GO:1903362,GO:1905368,GO:1905369,GO:2000045,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Exons5
EggNOG free text desc.endopeptidase activator activity
EggNOG OGsKOG4470@1,KOG4470@2759
Ec32 ortholog descriptionProteasome activator pa28, C-terminal domain
Ec32 orthologEc-06_010760.1
EC1.4.3.21
Cds size744
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03051,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18633.1prot_Ecto-sp6_S_contig96.18633.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 338420..344416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350589.747458-CDS-Ecto-sp6_S_contig96:338419..3386681682350589.747458-CDS-Ecto-sp6_S_contig96:338419..338668Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 338420..338668 -
1682350589.7683353-CDS-Ecto-sp6_S_contig96:339230..3393921682350589.7683353-CDS-Ecto-sp6_S_contig96:339230..339392Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 339231..339392 -
1682350589.7896647-CDS-Ecto-sp6_S_contig96:342597..3427181682350589.7896647-CDS-Ecto-sp6_S_contig96:342597..342718Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 342598..342718 -
1682350589.8033776-CDS-Ecto-sp6_S_contig96:343070..3431511682350589.8033776-CDS-Ecto-sp6_S_contig96:343070..343151Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 343071..343151 -
1682350589.8132017-CDS-Ecto-sp6_S_contig96:344285..3444161682350589.8132017-CDS-Ecto-sp6_S_contig96:344285..344416Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 344286..344416 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350589.822816-UTR-Ecto-sp6_S_contig96:344416..3444901682350589.822816-UTR-Ecto-sp6_S_contig96:344416..344490Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 344417..344490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18633.1

>prot_Ecto-sp6_S_contig96.18633.1 ID=prot_Ecto-sp6_S_contig96.18633.1|Name=mRNA_Ecto-sp6_S_contig96.18633.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=248bp
MSSLTAISVREGEVALAKLPEQVGKMQALLEAEFAYTSLADIESGFKQLL
TSSGGSATENANMGTLLSTVRNEVTQTMSILLALKRWIRVQVPKIEDGNN
FGVSVQLDVAKGIDELTTPVASSLGEMPSYFESRASAWDKIGNKKSKESK
TSSSASKDTGGKARDDGDSSKTSESTSTEEKTSESSFAPDSANHLIALDV
KWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMYSF*
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mRNA from alignment at Ecto-sp6_S_contig96:338420..344490-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18633.1 ID=mRNA_Ecto-sp6_S_contig96.18633.1|Name=mRNA_Ecto-sp6_S_contig96.18633.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6071bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:338420..344490- (Ectocarpus species6 EcLAC_371)
GACTGCTGTGCCCATTACCACTATCGACTATCGACTGACGCGACCCATCT
CTCGATCATCGAAACCAGCCAGTCATGAGTTCGTTGACAGCGATCAGTGT
CAGAGAGGGAGAGGTAGCCCTCGCAAAGCTGCCCGAGCAAGTTGGAAAAA
TGCAAGCTCTCTTGGAGGCAGAGTTCGCGTACACAAGCCTGGCGGACATC
GAAAGGTGAGCACACACACACACGCACACGCCAGGCACCGATGACGAACG
GCGCCGAAGGTCTCTTGCGTGTCTTGCTGTAGGCAACGAGGTATGCATGT
TTGGCGGTCTGTTGGTCTAGATCATCAGACAAGCAGCTACCCAGCTGCAT
GCTATTCTGAGGGTTCTGTGTCGCTCGGGTGGCGTTCGGCAGAAGATGAG
GAGGGACGGGGGTGCAACGCGGACGCAAGGATAGACGACGAGAATCCACG
GGCCCGTGTCGATCCACGGAGGGAGGGTTCGCTTCGTCAGGGAAGGATGT
CACTTGGTTTCCGGCGTGTGTTTGGCGGTTCATCTGCAGAAATCCTTAGC
AGCAATATCCTATGCAAGACCACGGTGGGTTGTTGGGAAGGATCCACGGT
TAGCTTTTTCACGGCAGTGTTTCTTTTCAGGGCAATCGACAGCGGGTGCT
CCATGTGCGCTGGGGTGTAGCCGATCATGCCCTTTGTCGCAAGGCCAACG
ACGACAGCACAGACTCAATTGCGATTAATTGCTGTTAGTGGCTGGGGCGT
CCGATACGTATGTGGAGCACAGCATCAGGTGTGGCTGGTCTGTTGGCTTC
CTCAGAATTCTCCACATTTACATGATGTCCGAACTCTCAAGAGCGCGTGG
TTCTGCACAGGATCCGGTTGTCGAGGTTTACGGGTTCTTTTTTTGCCCTC
CTTCCTAACGAACCACTCTGTCGTTTGTTTCAAGCTTCGATTTCAGTAGC
CGGCTCACGTTATGTCGTGGCGAAGGCGCACCTCTCTAACTGCTGTGAGT
TCTTCAGTGTTCTTCCAGGCTACAATCAAAATACAGCACGCCGTCATAAC
AGGTTCGCATCAACCAGCTCACCAACAGGAATACCAGCGTTGTTGTTCCC
TCGTAGTGAATGCTTGGCGCGCTGTAAAGCAGAAGCAACAGCAACAGCAG
TGCCAAAAGGCCGCGTCGATATCAAAGCCAAATCCATAATCACCCATCGG
AACCATCTCAACGCTTGATTCGACCCCTCTCTACCACACTACTGTACCCC
GATCCCTTTCGCGCTTCGGCCTTCACGCGACAACGACAACGATAATTTCT
CACAACTTTTCATACCTTCGTCGGGCGAAACAACACCAGCGGGTTCAAGC
AACTCCTAACCAGCTCGGGGGGAAGCGCAACCGAGAATGCGAACATGGGG
ACTCTGCTGTCCACCGTCAGGTGCGTGGGTATCTGATTTAGCAAAGAGTG
CTTCGTAGTGTAGTTGACCAAGCCAACCGGCCGACGAATGCAAGGACACC
AATAATTTTTGGCGGAAGAACATCACAAATTTGAACCCGCGGTATATACA
TCCCGTGGGGGTCCGCAGAAGGCTGACGAGGGGGGTAGAAGTGTGTGTAT
TGTGTGCAGAAGGATGGCTCGAGCGCCAGAAAGTGAGTGAGCGTTGGACC
CGGACCCCGGAAGGAACGCGTGCGTGTACGCACACTCGTCTACTATCCCA
AAGCTGAAACAAGTGCGGAACCCGGCCTCCTCAAAGCACGCAACGACCTC
TTTGCTGCTCTATCATTTCTAGGAACGAGGTGACCCAGACCATGAGCATC
CTTCTGGCCCTCAAGAGGTGGATCCGGGTGCAGGTGCCCAAGATCGAGGA
CGGCAACAATTTCGGCGTCAGCGTGCAGCTCGACGTCGCCAAGGTACGGT
GGGAGTCACTATTACACATGTCGACAGATGCCGCAATAAGAACAGAACAT
CGAATACCATGTTCGATAGGCTGGTCCCATCTTAGGACATCCCGTTTTGC
GGGGGGGGGGGGATGAAGGAGCCCCAGTGTTGCATAGAGCATGAGATGCC
GGACATCTTGATCAGCAGCACCGTGCCTTTGTGGGTGTCGCGTGAAACCG
ATGAACTTGACTCTGCGCGCAACAAACTCTAAATATTGTTGTCTTTTTCG
CGCGTGGCCGCGCCGGAATATTACGGCACATGATGAAGTCTGATGGTGTT
TCCCTTTTCTTTTCACGTCTGTTCAGCGTGTCAGGAAACGGCAACGGCAT
CTCCCCAACGTAGTGTATAGGGAGGGAACCTCGCTGTTTCTTGCAGACAT
GGCTGCCGTGTCTTCCCCGCACCTCTCCCGTGTACTGTTAGCCCTCGAGA
TGACACCGCTACCGACCAGAAAAAAACGGAGTAACGACCACCCCGAAAAA
TTATTTTTCCTTTCCTAGCTCAGCGGTCGAATTTGTTTTAGACCGGAAAT
AGGGCGCAAGTACTACTCCAGGTGGAGATTTGACTCTTTATACTCTGTGA
CACTTGTCAATAGACCATACACTATGAATCAACAGGACCACATCTTCTCT
CCGCACTCTGGAAGGGTGCGAACAGAGTATTTTTTTTTTGTACTTTTGCC
GATTGCTCCATTTTTCTCCCTTGAACTAAAGGATCTGATCCGGCTGATTC
GATACCTTTTGTTCCTGCGCCCACAACGCAAAATCCCGCACCCGGATCCA
AGGTGTTCCTGTTGAGAGGCACTTGCGTCCGTTTGAGCTCTCATGGGCAA
GAGTTGAGGGGTGATCGCCCAAAGAAATCATCCGAAAAAACAGAGCGTGT
GTTATTTTCAAGAGTTCTTTATTTAGTTCACAGTGTCGTTTTCGAGTTCA
CCGGGGACACGGTTGGACATGCGCACGAACGCTCTCGAGGACAACGACCA
CCCTACCTTGAAGCTAGAGCGCGAAGCCCATACTCAGAGACGGAAAGGGC
AGCCGTGGCGAAGCGGTTTCGAAATTCGTTGCTTGACCGGGGGCACATGA
CGCACATCTTGAAAATCCAAAAAATGGAAATGCCGAAACATCACCCATCT
TCGTGCTTTGTTTCACATGTGTCTCCCGCCGTCCATAAGCTGCCAGAGGC
GATCTGGGGCACATTCGCCGCTAGCCCTGCTCACGCTGATTCTCGGAAAC
TTTCAGTTTTGCTCGTCCGCGATGAATTGGTCCCAACAAGTGCTTGAGCG
TGTTGTTGTGCCAGCAGCAGATTTGGCGTGACTTTACTGAATTTTCATGC
TCAAGGTGCCATCTCCCTAAAACCCAACAACAATTATATGTAATTGTCTG
TTTGTCCTCCTGGAACCAGCTTCACGTCGGGGGAGACTTTCGCCACTTGC
CGGTCGGGGTCTTGCGCCGGAGGTGGCACCATCCTGAAGCTCACTCCAAG
TGCTTCGCTTGCCACGGAACCATCCCGGCTGGCAATGTCTGTCTGTCTCT
GTGACTTCGCTTGCCACGGAAACATCCCGGCTGGCAATGTCTGTCTGTCT
CTGTGACTTCGCTTGCCACGGAACCATCCCGGCTGGCACTGTGTGTCTGT
CTCTGTGACTTCGCTTGCCACGGAACCATCCCGGCTGGCACTGTGTGTCT
GTCTCTGTGACTTCGCTTGCCACGGAACCATCCCGGCTGGCACCATCCTG
AAGCTCACTCCAAGTGCTTCGCTTGCCACGGAACCATCCCGGCTGGCACT
GTGTGTCTGTCTCTGTGACGTCACAGAGACAGACACACATTGCCAGCCGG
GATGTTTCCGTGGCAAGCGAAGCACTTGGAGTGAGCTTCAGGATGGTGCC
ACCTCCGGCGAAAAACCCCTACTGGCAAGTGGCGAAATTCTCCCCCGACG
TGAAGCTGATACCAGGAGGAAAAACAGACAAATATGTGTGGGGTGTTTTT
TATTTTTATTAATTGAATTATTTGTGTTTTGGGTCCATCTTCCCGCTTAT
GGCACGAGGGTGGCCACGCGTTCGAACCTACCGGGTGTCTCCCAACGTCT
CGGACCACTGCCGAACTTGTGTGCTCTCGAGCGGCGGGACTGTGTGGAGA
AGTGTTAAATATGTGGTCTCGTGGACGCCCGTGTGAGGTCGTAATGTGAT
ATTTTCGAAACTATTTGTGAGAATTCTCATGAGAACGGATCGGTTTTTCA
TGTGAAGACATTAACAATCATGTGGTCCCGTGGCCTGGCGTGTGATGATT
GTGATGTATGATGTGATCTCGCGTGCGTCTCGGTGTGGTATGGTCCCGCG
AGCGGCAGGCGGGATTGTCGGGGGCGGAACTGCCACAATTGACGGGTAGG
GGAACGTGCGTACGCGCGTACAAACCTTCATCTAACACCAGTCTGCAGGG
AAAATATTGGAACTTTTTTATGTTATGCAGTACCAAGCATCGTATCAGGA
AACCAGAGCCCAATTGCGATCTTGTACACAAACTGAAAGACAAAAATTAC
AATTTCCGGGCACGTTCGGGCAATATATATAATATCAAGCTTTTTCGAAA
ATACGCTCGCGTGTGTTTTCAAGACCAATTCATGGTGGGCGAGAAAAGTT
GAGAGCTTCCGAGAATCAATGTGATCAGGGCTATTATATTATAGTTGCTC
AGGATCGCCTGTTGCAGCTTGTGGGAGGCGGCAGAACGAACAGAAACAAC
GCCCAAGACCGGCCTTTGTTGACTCCGAATTTTTTCGGTCTAATTTTCCT
CCACTCTCACATGCTTTTTTACGTTCCGACTCTCTGCTGCTGCTGTGAGC
AGCACAAATGTATTCGCTGCTGCTCCAACCGGTGGGCCATACTAATAGTG
CTCCCGATCCGCCAGCGTAGTGCACACGATCCTTTGCTAGTGGTCCGGTG
GCTGTGTGCGTTGTGTGTCGTGCGCTTCGTACACCGTGGTGTTGCTGACA
AATGTAGGCGTGTTTCGCACATATTTCGTGACGTAGGCGACGAGTTTCAT
GAGCGTTGATTGGTTATTTTTCACTGTATCTAGTCTGTTGGGCTAACGAC
CATGGACACTTTCTTGGCCTAAAAGAATCGTGATCTCGAGGTCTAACTGC
TTTACACTCCTAAACGCGTTCACTTGTTAACGTTCCCTAATCACGAAGGG
GATCGACGAGCTCACGACTCCCGTGGCGAGCAGCCTCGGAGAGATGCCGA
GCTACTTCGAGAGCCGGGCTTCGGCGTGGGACAAGATCGGGAACAAGAAG
TCCAAGGAGAGCAAGACCTCATCTTCTGCATCCAAGGACACCGGGGGGAA
GGCGCGTGATGTTGTTGTTGTTGTTGTTTGTTGTTTGTTGGTTCTTCGCA
TAGAAAAACGTTCCGTTCTCTCTACCCAGTACCTTCTTCTGTCCGTACTA
ATCAAACACTTGACGCGGTCGATTCCCGCGTTCACAGGCTAACATACCCA
AAAACGTTACACGTGTGTGTCTGTGACGAAATTGAGTAAGACTGCTGTTG
TCCGTGTTGCGTGCGTTTCCGTTCACTAAACGCGGGGTGGTGTTTGATTG
AGATCGGAAACCAACGTGGTATTTCGTATTTCGTATGATGTGTTTGTTTT
CTTGGTCCCCCGTTCATGCTCGACAGATTTTTTATCTACCGATACACGTG
ACGAAAAAAACGTTGTGACTCCTCCTGTACGTTGTACCTCGCGAAACTTT
GTGTACATGAAACAGACTTGGCGTAGAAATTACATCCCATCAAGGCCAGA
CAGTTTTGGTTTCGGCTTGTTTCACGCCTCCCATCTTTCTCTCCCTCTTC
ATGCCATGAATATTTATCTCCCTCTTCAAGCCATGAGTATTACGCCTGCT
GCTGTATTGTTCCTCCCTCCAGGACGGGGACTCTTCCAAGACCTCCGAGT
CCACCAGCACCGAAGAGAAGACTTCCGAATCTTCGTTCGCGCCTGACTCG
GCCAACCACCTCATCGCCCTCGACGTGAAGTGGTTCGTTTCCCTGCACCA
CACCCTGCTGAGAGCCAGGGATTCTTTGGTCCTCGCCGCGGACATGATCG
AGAAGAACATGGAGAAGCTCTTGCGTCCCAAGGGCACCAACACGCAGGGT
GGTGGCATGTACTCGTTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:338420..344490-

>mRNA_Ecto-sp6_S_contig96.18633.1 ID=mRNA_Ecto-sp6_S_contig96.18633.1|Name=mRNA_Ecto-sp6_S_contig96.18633.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:338420..344490- (Ectocarpus species6 EcLAC_371)
ATGAGTTCGTTGACAGCGATCAGTGTCAGAGAGGGAGAGGTAGCCCTCGC
AAAGCTGCCCGAGCAAGTTGGAAAAATGCAAGCTCTCTTGGAGGCAGAGT
TCGCGTACACAAGCCTGGCGGACATCGAAAGCGGGTTCAAGCAACTCCTA
ACCAGCTCGGGGGGAAGCGCAACCGAGAATGCGAACATGGGGACTCTGCT
GTCCACCGTCAGGAACGAGGTGACCCAGACCATGAGCATCCTTCTGGCCC
TCAAGAGGTGGATCCGGGTGCAGGTGCCCAAGATCGAGGACGGCAACAAT
TTCGGCGTCAGCGTGCAGCTCGACGTCGCCAAGGGGATCGACGAGCTCAC
GACTCCCGTGGCGAGCAGCCTCGGAGAGATGCCGAGCTACTTCGAGAGCC
GGGCTTCGGCGTGGGACAAGATCGGGAACAAGAAGTCCAAGGAGAGCAAG
ACCTCATCTTCTGCATCCAAGGACACCGGGGGGAAGGCGCGTGATGACGG
GGACTCTTCCAAGACCTCCGAGTCCACCAGCACCGAAGAGAAGACTTCCG
AATCTTCGTTCGCGCCTGACTCGGCCAACCACCTCATCGCCCTCGACGTG
AAGTGGTTCGTTTCCCTGCACCACACCCTGCTGAGAGCCAGGGATTCTTT
GGTCCTCGCCGCGGACATGATCGAGAAGAACATGGAGAAGCTCTTGCGTC
CCAAGGGCACCAACACGCAGGGTGGTGGCATGTACTCGTTCTAA
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