mRNA_Ecto-sp6_S_contig96.18631.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig96.18631.1 vs. uniprot
Match: A0A6H5KZK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZK4_9PHAE) HSP 1 Score: 212 bits (540), Expect = 1.070e-68 Identity = 107/113 (94.69%), Postives = 110/113 (97.35%), Query Frame = 1
Query: 94 MLHQIAALAGSSAVGLGAYGAHGLSGKSDKIKADWKTATQYQMFHALALATLPIYQKTPARTAAGLLFTTGITLFSGSIYYASLKEDKKASKAAPAGGICLMLGWATMAILKR 432
MLHQIAALAGSSAVGLGAYGAHGL+GKSDKIKADWKTATQYQMFHALALATLPIYQKTPARTAAGL FTTGITLFSGSIYYA LKEDKKASK APAGGIC++LGWATMAILKR
Sbjct: 1 MLHQIAALAGSSAVGLGAYGAHGLAGKSDKIKADWKTATQYQMFHALALATLPIYQKTPARTAAGLFFTTGITLFSGSIYYACLKEDKKASKVAPAGGICMILGWATMAILKR 113
BLAST of mRNA_Ecto-sp6_S_contig96.18631.1 vs. uniprot
Match: D8LH09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH09_ECTSI) HSP 1 Score: 135 bits (339), Expect = 6.400e-38 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1
Query: 139 LGAYGAHGLSGKSDKIKADWKTATQYQMFHALALATLPIYQKTPARTAAGLLFTTGITLFSGSIYYA 339
LGAYGAHGLSGKSDKIKADWKTATQYQMFHALALATLPIYQKTPARTAAGLLFTTGITLFSGSIYYA
Sbjct: 17 LGAYGAHGLSGKSDKIKADWKTATQYQMFHALALATLPIYQKTPARTAAGLLFTTGITLFSGSIYYA 83
BLAST of mRNA_Ecto-sp6_S_contig96.18631.1 vs. uniprot
Match: A0A835YJ16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ16_9STRA) HSP 1 Score: 131 bits (330), Expect = 9.710e-37 Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1
Query: 100 HQIAALAGSSAVGLGAYGAHGLSGKSDKIKADWKTATQYQMFHALALATLPIYQKTPARTAAGLLFTTGITLFSGSIYYASLKEDKKASKAAPAGGICLMLGWATMAILKR 432
H +AAL+G+S VGLGA GAH L K++K K DW TAT+YQ+ H+LALA LP YQ++ ARTAAG+LFT+GI LFSGSIY L ++ K S AAP GG+ + GW ++A+LKR
Sbjct: 4 HVVAALSGASGVGLGAIGAHRLKNKTEKEKNDWNTATRYQLIHSLALAVLPAYQRSNARTAAGVLFTSGIILFSGSIYTYILTDNIKMSGAAPLGGMAFIAGWLSLALLKR 114
BLAST of mRNA_Ecto-sp6_S_contig96.18631.1 vs. uniprot
Match: A0A7S4IW56_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IW56_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 6.370e-23 Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 1
Query: 106 IAALAGSSAVGLGAYGAHGLSGKSDKIKADWKTATQYQMFHALALATLPIY---QKTPARTAAGLLFTTGITLFSGSIYYASLKEDKKASKAAPAGGICLMLGWATMAILKR 432
+ L+G+++VG GAYGAHGL GK ++T +Y + H+ L P +T A TAAG TTGI LF GS Y + ED+ KAAPAGG+ L+LGW ++A+L++
Sbjct: 7 VGGLSGAASVGAGAYGAHGLRGKDQSYVRSYETGARYHLVHSALLVATPSICGGGRTRAATAAGAFLTTGIGLFCGSCYAVGVTEDRAYGKAAPAGGVSLILGWVSLALLRK 118
BLAST of mRNA_Ecto-sp6_S_contig96.18631.1 vs. uniprot
Match: A0A7S3K448_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K448_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 9.870e-21 Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 103 QIAALAGSSAVGLGAYGAHGLSGKSDKIKADWKTATQYQMFHALALATLPIYQKTPARTAAGLLFTTGITLFSGSIYYASLKEDKKASKAAPAGGICLMLGWATMAIL 426
++A L G S+V GA GAH L+ + A WKTA QYQ FHALAL P+ A+ AG+ F++G LF GS Y + +D+ K +P GG+ L+ GW +A+L
Sbjct: 18 RLAGLLGGSSVACGAAGAHALNDRDPNFLAIWKTAVQYQQFHALALLATPLAASVRAKLVAGICFSSGTLLFCGSNYLVAFYQDRSYGKMSPYGGMLLIGGWLALALL 125
BLAST of mRNA_Ecto-sp6_S_contig96.18631.1 vs. uniprot
Match: D3BR49_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BR49_POLPP) HSP 1 Score: 88.6 bits (218), Expect = 1.140e-19 Identity = 49/110 (44.55%), Postives = 73/110 (66.36%), Query Frame = 1
Query: 103 QIAALAGSSAVGLGAYGAHGLSGK-SDKIKAD-WKTATQYQMFHALALATLPIYQKTPARTAAGLLFTTGITLFSGSIYYASLKEDKKASKAAPAGGICLMLGWATMAIL 426
+I L+ +SAVGLGA+G+HGL K SD +K D WKTA+ Y + H++A+ P + K P AG++FT+G+ LFSGS+YY ++ + KK P GG+ L+ GW + +L
Sbjct: 14 KIGGLSAASAVGLGAFGSHGLKKKVSDPVKLDYWKTASHYHLLHSIAIMMAP-FSKNP--NFAGVMFTSGVVLFSGSLYYMTVGQ-KKMGFVPPIGGVGLIAGWLALVLL 119
BLAST of mRNA_Ecto-sp6_S_contig96.18631.1 vs. uniprot
Match: B2AMB4_PODAN (Podospora anserina S mat+ genomic DNA chromosome 5, supercontig 8 n=2 Tax=Podospora TaxID=5144 RepID=B2AMB4_PODAN) HSP 1 Score: 89.0 bits (219), Expect = 1.400e-19 Identity = 53/131 (40.46%), Postives = 76/131 (58.02%), Query Frame = 1
Query: 52 PTGSRQHPRLLNSTMLHQIAALAGSSAVGLGAYGAHGLSGK-SDKIK-ADWKTATQYQMFHALALATLPIYQKTPARTAAGLLFTTGITLFSGSIYYASLKEDKKA--SKAAPAGGICLMLGWATMAILKR 432
P+ S Q + +S + ++AA++G++AVG GA+GAHGL + +D K A W TA QYQ+ H++AL A LFT G+T+FSGSIY +L +K P GG+CL+ GW +A KR
Sbjct: 14 PSSSLQTQTMASSAIFWKVAAISGATAVGFGAFGAHGLKKRIADPAKLASWGTAAQYQLIHSVALLMAS------GNPVAASLFTAGMTMFSGSIYALTLNPEKFKFLGPVTPIGGVCLIAGWLVLAFGKR 138
BLAST of mRNA_Ecto-sp6_S_contig96.18631.1 vs. uniprot
Match: A0A6P1UCC6_9GAMM (DUF423 domain-containing protein n=2 Tax=Sinimarinibacterium sp. NLF-5-8 TaxID=2698684 RepID=A0A6P1UCC6_9GAMM) HSP 1 Score: 87.8 bits (216), Expect = 2.340e-19 Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1
Query: 106 IAALAGSSAVGLGAYGAHGLSGK-SDKIKADWKTATQYQMFHALALATLPIYQKTPARTA----AGLLFTTGITLFSGSIYYASLKEDKKASKAAPAGGICLMLGWATMAI 423
+ AL G V LGA+GAHGL + S ++ A WKTA +YQ++HAL L + ++ + A AG+ FT G+ +FSGS+Y SL + P GG+CL+LGWA + +
Sbjct: 12 VGALYGFVGVALGAFGAHGLRARLSPEMLAIWKTAVEYQLYHALVLLVVGVWLRAAASATPLNVAGIGFTAGVLIFSGSLYALSLSGVRMLGAITPIGGLCLLLGWAALLV 122
BLAST of mRNA_Ecto-sp6_S_contig96.18631.1 vs. uniprot
Match: G2QJ86_MYCTT (Uncharacterized protein n=1 Tax=Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799) TaxID=573729 RepID=G2QJ86_MYCTT) HSP 1 Score: 86.7 bits (213), Expect = 1.130e-18 Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 1
Query: 82 LNSTMLHQIAALAGSSAVGLGAYGAHGLSGK-SDKIK-ADWKTATQYQMFHALALATLPIYQKTPARTAAGLLFTTGITLFSGSIYYASLKEDKKA--SKAAPAGGICLMLGWATMAILKR 432
++ T+ + A+ G++AVGLGA+GAHGL + SD K A+W TA QYQ+ H++AL + P AG LFT G+T+FSGS+Y +L ++ P GG+CLM GW +A KR
Sbjct: 25 MSGTLFWRTGAVFGAAAVGLGAFGAHGLKKRISDPNKLANWSTAAQYQLIHSVALL---VASNNPV---AGTLFTAGMTMFSGSLYALTLDTERFRFLGPVTPLGGLCLMAGWLALAFGKR 139
BLAST of mRNA_Ecto-sp6_S_contig96.18631.1 vs. uniprot
Match: A0A1Y2TUA1_9PEZI (DUF423-domain-containing protein n=1 Tax=Hypoxylon sp. EC38 TaxID=1001937 RepID=A0A1Y2TUA1_9PEZI) HSP 1 Score: 85.1 bits (209), Expect = 3.400e-18 Identity = 52/129 (40.31%), Postives = 73/129 (56.59%), Query Frame = 1
Query: 49 PPTGSRQHPRLLNSTMLHQIAALAGSSAVGLGAYGAHGLSGK-SDKIK-ADWKTATQYQMFHALALATLPIYQKTPARTAAGLLFTTGITLFSGSIYYASLKEDKKA--SKAAPAGGICLMLGWATMAI 423
P T S H +T+L +A+L+G+SAVGLGA+GAHGL +D + A+W TA YQ+ H++AL AG LF +G+TLFSGS+Y L + P GG+CL+ GW +A+
Sbjct: 12 PSTASSSH----RNTLLWTLASLSGASAVGLGAFGAHGLKAIIADPARLANWATAAHYQLIHSVALLVAASRSPPAPNPVAGWLFASGMTLFSGSLYLLVLDPGRFRFLGPVTPLGGLCLIGGWVALAL 136 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig96.18631.1 >prot_Ecto-sp6_S_contig96.18631.1 ID=prot_Ecto-sp6_S_contig96.18631.1|Name=mRNA_Ecto-sp6_S_contig96.18631.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=114bp MLHQIAALAGSSAVGLGAYGAHGLSGKSDKIKADWKTATQYQMFHALALAback to top mRNA from alignment at Ecto-sp6_S_contig96:319323..326634- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig96.18631.1 ID=mRNA_Ecto-sp6_S_contig96.18631.1|Name=mRNA_Ecto-sp6_S_contig96.18631.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7312bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:319323..326634- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:319323..326634- >mRNA_Ecto-sp6_S_contig96.18631.1 ID=mRNA_Ecto-sp6_S_contig96.18631.1|Name=mRNA_Ecto-sp6_S_contig96.18631.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:319323..326634- (Ectocarpus species6 EcLAC_371)back to top |