mRNA_Ecto-sp6_S_contig96.18625.1 (mRNA) Ectocarpus species6 EcLAC_371
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig96.18625.1 vs. uniprot
Match: D8LH17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH17_ECTSI) HSP 1 Score: 792 bits (2046), Expect = 2.360e-264 Identity = 528/547 (96.53%), Postives = 529/547 (96.71%), Query Frame = 1
Query: 2545 RGRLERDVAEARVQAAAAAVEENANRITDGGLARLQTELAVKVSELRLQTDKALSLEAQKERAEVAAVKRERSLQDLMEKNRQATTRKKLARYEKANLELQEEVEALSQLKDAAAGFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVDKSVEEALLLVSKEAALKDVEAQLTAVKDRAKVLEKEALRVPELEEELXXXXXXXXXXXXXXXXXQAIQDKEEAQTELVKERLFDLERSVEMAEWSERKLAKENEGLQGLISRNRQRFHKELARLTVASADLEDKSNALKDLEAVYDRERQTVKELGNQVETLKGKAEELAAELSMTRDELARETEMRLKAETAVEELQLAEKADKGYEEQLKKADAALQAARQEGQAAVAEVQTLLEKEKQAWGTEKSSLTTRLEEALRSTEDFSARVVALESSTEKLRQESQQSKAEAEQLRTQLGLSAKSLSEATVDKERLVTELEKTKGVVEERNRLQKSVDNLKAALKKFTGKQDDESDNNGATLEKEPEVDALEQAQERLSKTAATMSGEESRDD 4185
RGRLERDVAEARVQAAAAAVEENANRITDGGLARLQTELAVKVSELRLQTDKALSLEAQKERAEVAAVKRERSLQDLMEKNR ARYEKANLELQEEVEALSQLKDAAAGFE XXXXXXXXXXXXXXXXXXXXXXXXXXX ASVDKSVEEALLLVSKEAALKDVEAQLTAVKDRAKVLEKEALRVPELEEELXXXXXXXXXXXXXXXXXQAIQDKEEAQTELVKERLFDLERSVEMAEWSERKLAKENEGLQGLISRNRQRFHKELARLTVASADLEDKSNALKDLEAVYDRERQTVKELGNQVETLK KAEELAAELSMTRDELARETEMRLKAETAVEELQLAEKADKGYEEQLKKADAALQAARQEGQAAVAEVQTLLEKEKQAWGTEKSSLTTRLEEALRSTEDFSARVVALESSTEKLRQESQQSKAEAEQLRTQLGLSAKSLSEATVDKERLVTELEKTKGVVEERNRLQKSVDNLKAALKKFTGKQDDESDNNGATLEKE EVDALEQAQERLSKTAAT+SGEESRDD
Sbjct: 130 RGRLERDVAEARVQAAAAAVEENANRITDGGLARLQTELAVKVSELRLQTDKALSLEAQKERAEVAAVKRERSLQDLMEKNR--------ARYEKANLELQEEVEALSQLKDAAAGFEDAKIKLXXXXXXXXXXXXXXXXXXXXXXXXXXXLAASVDKSVEEALLLVSKEAALKDVEAQLTAVKDRAKVLEKEALRVPELEEELXXXXXXXXXXXXXXXXXQAIQDKEEAQTELVKERLFDLERSVEMAEWSERKLAKENEGLQGLISRNRQRFHKELARLTVASADLEDKSNALKDLEAVYDRERQTVKELGNQVETLKAKAEELAAELSMTRDELARETEMRLKAETAVEELQLAEKADKGYEEQLKKADAALQAARQEGQAAVAEVQTLLEKEKQAWGTEKSSLTTRLEEALRSTEDFSARVVALESSTEKLRQESQQSKAEAEQLRTQLGLSAKSLSEATVDKERLVTELEKTKGVVEERNRLQKSVDNLKAALKKFTGKQDDESDNNGATLEKEAEVDALEQAQERLSKTAATLSGEESRDD 668
BLAST of mRNA_Ecto-sp6_S_contig96.18625.1 vs. uniprot
Match: D8LH16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH16_ECTSI) HSP 1 Score: 398 bits (1022), Expect = 3.450e-116 Identity = 567/680 (83.38%), Postives = 571/680 (83.97%), Query Frame = 1
Query: 40 MGWLLAFGLGGLALEGASGFTLLPRLLREKATSRPFVPXXXXXXXXXXXXXRDNSLTGEVCSTNAVAAATVCSSRNKKRRSKAVFPLPATKASDLPSFASSGDGGDDKAEEGGKEXXXXXXXXXXXVEAAVKAVVDADEKPEAAEEDKKKKDVEEVAAPAQADATXXXXXXXXXXXXXXXXXXXXXXXXEGGDKKEEKDPTATASPLPTIDVPXXXXXXXXXPPNGGKVXXXXXXXXXXXXXXXXXXXPKPVVAEEKKXXXXXXXXXXXXXKAAPTATSSPLPAVSAPPPPNTGKVXXXXXXXXXXXXXXXXXXXAKPVVAEEKKEXXXXXXXXXXXXXXXXXTPTATSSPLPAVSAPPPPNTGNVSAXXXXXXXVXXXXXXXTPKEEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVASIPPVAAVSAPPSPNSGVSAXXXXXTGGXXXXXXXXXXXXXXXXXXXSPKTVEEKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEIKGSGKVASQDEDKLTPLDMLVGPFMVFATGMQKEAEFLEGELNQRVSQVTAEFQADRKNMEETLREAEEQLK 2079
MGWLLAFGLGGLALEGASGFTLLPRLLREKATSRPFVPXXXXXXXXXXXXXRDNSLTGEVCSTNAVAAATVCSSRNKKRRSKAVFPLPATKASDLPSFASSGDGGDDK XXXXXXXXXXX K D EEV APA +DAT XXXXXXXXXXX EGGDKKEEKDPTATASPLPTIDVPXXXXXXXXXPPNGGKVXXXXXXXXXXXXXXXXXXXPKPVVAEEKKXXXXXXXXXXX APTATSSPLPAVSAPPPPNTGKVXXXXXXXXXXXXXXXXXXXAKPVVAEEKKE TPTATSSPLPAV XXXXX V XXXXXXTPKEEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXX AEVASIPPVAAVSAPPSPNSGVSAXXXXXTGGXXXXXXXXXXXXXXXXXXXSPKTV ++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEIKGSGKVASQDEDKLTPLDMLVGPFMVFATGMQKEAEFLEGELNQRVSQVTAEFQADRKNMEETLRE E L+
Sbjct: 1 MGWLLAFGLGGLALEGASGFTLLPRLLREKATSRPFVPXXXXXXXXXXXXXRDNSLTGEVCSTNAVAAATVCSSRNKKRRSKAVFPLPATKASDLPSFASSGDGGDDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK-DGEEVVAPAPSDATAADSPSPNGEKAXXXXXXXXXXXAEGGDKKEEKDPTATASPLPTIDVPXXXXXXXXXPPNGGKVXXXXXXXXXXXXXXXXXXXPKPVVAEEKKXXXXXXXXXXX----APTATSSPLPAVSAPPPPNTGKVXXXXXXXXXXXXXXXXXXXAKPVVAEEKKEEKKEA------------TPTATSSPLPAVXXXXXXXXXXXXXXXXXXSGVSXXXXXXTPKEEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXX---------AEVASIPPVAAVSAPPSPNSGVSAXXXXXTGGXXXXXXXXXXXXXXXXXXXSPKTVVAEEKEKKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEIKGSGKVASQDEDKLTPLDMLVGPFMVFATGMQKEAEFLEGELNQRVSQVTAEFQADRKNMEETLRENESDLR 654
BLAST of mRNA_Ecto-sp6_S_contig96.18625.1 vs. uniprot
Match: A0A6H5JEP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEP1_9PHAE) HSP 1 Score: 377 bits (967), Expect = 2.390e-109 Identity = 577/735 (78.50%), Postives = 586/735 (79.73%), Query Frame = 1
Query: 40 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-----------AEVASIPPVAAVSAPPSPNSGVSAXXXXXTGGXXXXXXXXXXXXXXXXXXXSPKTV--EEKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEIK--------------GSGKVASQDEDKLTPLDMLVGPFMVFATGMQKEAEFLEGELNQRVSQVTAEFQADRKNMEETLREAEEQLKRLQGVAAEKKKAEESARKVKAEADEAVA 2163
MGWLLAFGLGGLALEGASGFTLLPRLLREKATSRPFVP XXXXXXXXXX RDNSLTGEVCSTNAVAAATVCSSRN KRRSKAVFPLPATKA+DLPSFASSGDG +DKAE+GGKE VEAA K VVDADEKPEA DKKK DVEEVAAP+ DAT XXXXXXXXXXXXXXXX EGG+KKEEKDPTATASPLPTID XXXXXXXXXPPN GKVXXXXXXXXXXXXXXXXXXXPKPV AEEKKXXXXXXXXXXXXX SPLPAVSAPPPPNTGKV XXXXX XXXX EEKK XXXXXXXXXXXXXXXXX XXXXXXX XXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AEVASIPPV+AVSAPP PNSG XXXXXTGGXXXXX SPKTV EEKK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GSGKVASQD+D+LTPLDMLVGPF+VFATGMQKEAEFLEGELNQRVSQVTAEFQADRKNMEETLREAEEQLKRLQGVAAEKKKAEESARKVKAEADEA A
Sbjct: 1 MGWLLAFGLGGLALEGASGFTLLPRLLREKATSRPFVPPSXXXXXXXXXXGRDNSLTGEVCSTNAVAAATVCSSRNNKRRSKAVFPLPATKATDLPSFASSGDGDNDKAEKGGKEGSGDAAEEKEEVEAAAKPVVDADEKPEAXXXDKKK-DVEEVAAPSPPDATAADXXXXXXXXXXXXXXXXDPAPAEGGNKKEEKDPTATASPLPTIDXXXXXXXXXXXPPNTGKVXXXXXXXXXXXXXXXXXXXPKPVAAEEKKXXXXXXXXXXXXXXXX-XXXXSPLPAVSAPPPPNTGKVSAXXXXXSGLSXXXXPNTPK-----EEKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVASIPPVSAVSAPPLPNSGXXXXXXXXTGGXXXXXSPN-----------SPKTVVAEEKKEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGKVASQDDDQLTPLDMLVGPFIVFATGMQKEAEFLEGELNQRVSQVTAEFQADRKNMEETLREAEEQLKRLQGVAAEKKKAEESARKVKAEADEAAA 717 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig96.18625.1 >prot_Ecto-sp6_S_contig96.18625.1 ID=prot_Ecto-sp6_S_contig96.18625.1|Name=mRNA_Ecto-sp6_S_contig96.18625.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=1383bp MGWLLAFGLGGLALEGASGFTLLPRLLREKATSRPFVPPPSSSSSVATTGback to top mRNA from alignment at Ecto-sp6_S_contig96:229840..250995- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig96.18625.1 ID=mRNA_Ecto-sp6_S_contig96.18625.1|Name=mRNA_Ecto-sp6_S_contig96.18625.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=21156bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:229840..250995- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:229840..250995- >mRNA_Ecto-sp6_S_contig96.18625.1 ID=mRNA_Ecto-sp6_S_contig96.18625.1|Name=mRNA_Ecto-sp6_S_contig96.18625.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=4149bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:229840..250995- (Ectocarpus species6 EcLAC_371)back to top |