mRNA_Ecto-sp6_S_contig96.18623.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18623.1
Unique NamemRNA_Ecto-sp6_S_contig96.18623.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:219433..219915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size483
Hectar predicted targeting categoryother localisation
Exons1
Cds size444
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350586.35072-UTR-Ecto-sp6_S_contig96:219432..2194401682350586.35072-UTR-Ecto-sp6_S_contig96:219432..219440Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 219433..219440 +
1682350586.3689365-UTR-Ecto-sp6_S_contig96:219884..2199151682350586.3689365-UTR-Ecto-sp6_S_contig96:219884..219915Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 219885..219915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350586.3605003-CDS-Ecto-sp6_S_contig96:219440..2198841682350586.3605003-CDS-Ecto-sp6_S_contig96:219440..219884Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 219441..219884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18623.1prot_Ecto-sp6_S_contig96.18623.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 219441..219884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18623.1

>prot_Ecto-sp6_S_contig96.18623.1 ID=prot_Ecto-sp6_S_contig96.18623.1|Name=mRNA_Ecto-sp6_S_contig96.18623.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=148bp
MNRGRGGGLRHMQKPDGERFPSRLHARVRGALPPAFAHVLHERLFCVRRG
IIYVKSRTSRPCWYMRGYEPSIKRVFCRGCGIFRYPVVGCFHQCPRRSGV
VTVSACVNVRVWYIDHVVCGEKYFILFLFFIFPYSPAGVLCERGVNR*
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mRNA from alignment at Ecto-sp6_S_contig96:219433..219915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18623.1 ID=mRNA_Ecto-sp6_S_contig96.18623.1|Name=mRNA_Ecto-sp6_S_contig96.18623.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=483bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:219433..219915+ (Ectocarpus species6 EcLAC_371)
CGGGGTGAATGAATCGGGGGAGGGGGGGGGGGCTCCGTCATATGCAGAAA
CCGGATGGTGAACGCTTCCCATCCCGACTTCACGCGAGGGTGAGAGGAGC
GCTCCCTCCCGCGTTCGCTCATGTACTTCATGAACGTCTTTTTTGTGTAC
GACGAGGGATAATCTATGTAAAGTCTAGAACATCACGTCCATGTTGGTAC
ATGCGAGGGTATGAACCAAGCATCAAGCGGGTTTTTTGCAGGGGGTGCGG
TATCTTTCGTTACCCGGTAGTTGGGTGTTTTCACCAGTGCCCCCGGCGAT
CAGGAGTTGTGACAGTTTCGGCCTGTGTTAACGTTAGGGTGTGGTACATA
GACCATGTCGTCTGTGGGGAGAAGTACTTCATTTTGTTTTTGTTTTTTAT
CTTTCCTTACTCTCCCGCAGGGGTGTTGTGTGAAAGAGGCGTGAATCGAT
AGGGTGCGGCTGGCGAAGAGATGTTGTCACCGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:219433..219915+

>mRNA_Ecto-sp6_S_contig96.18623.1 ID=mRNA_Ecto-sp6_S_contig96.18623.1|Name=mRNA_Ecto-sp6_S_contig96.18623.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:219433..219915+ (Ectocarpus species6 EcLAC_371)
ATGAATCGGGGGAGGGGGGGGGGGCTCCGTCATATGCAGAAACCGGATGG
TGAACGCTTCCCATCCCGACTTCACGCGAGGGTGAGAGGAGCGCTCCCTC
CCGCGTTCGCTCATGTACTTCATGAACGTCTTTTTTGTGTACGACGAGGG
ATAATCTATGTAAAGTCTAGAACATCACGTCCATGTTGGTACATGCGAGG
GTATGAACCAAGCATCAAGCGGGTTTTTTGCAGGGGGTGCGGTATCTTTC
GTTACCCGGTAGTTGGGTGTTTTCACCAGTGCCCCCGGCGATCAGGAGTT
GTGACAGTTTCGGCCTGTGTTAACGTTAGGGTGTGGTACATAGACCATGT
CGTCTGTGGGGAGAAGTACTTCATTTTGTTTTTGTTTTTTATCTTTCCTT
ACTCTCCCGCAGGGGTGTTGTGTGAAAGAGGCGTGAATCGATAG
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