mRNA_Ecto-sp6_S_contig96.18618.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18618.1
Unique NamemRNA_Ecto-sp6_S_contig96.18618.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig96.18618.1 vs. uniprot
Match: A0A6H5KF95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF95_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.690e-18
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 3 
Query:    3 AATGGSHGVRVLPVGQLERTGPRLSRRAVRGRPGVSSRSSLVIVAPSGHHGPHKGL 170
            A  GGSHGVRVL V +LERTGPRL RRAVRGRPGVSSRSSLVI+APS HHG  +G+
Sbjct:  150 AVAGGSHGVRVLHVERLERTGPRLVRRAVRGRPGVSSRSSLVIMAPSDHHGRLEGI 205
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KF95_9PHAE3.690e-1878.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:190413..190734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size324
Hectar predicted targeting categorysignal peptide
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350586.2941778-CDS-Ecto-sp6_S_contig96:190412..1907331682350586.2941778-CDS-Ecto-sp6_S_contig96:190412..190733Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 190413..190733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18618.1prot_Ecto-sp6_S_contig96.18618.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 190413..190733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18618.1

>prot_Ecto-sp6_S_contig96.18618.1 ID=prot_Ecto-sp6_S_contig96.18618.1|Name=mRNA_Ecto-sp6_S_contig96.18618.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=107bp
WRPRVGRTACGSFLLGSSSVRARVFLDVRCGGGQGSPPAPRWSSWLRPAT
MAHTKVYLLGVELSPFERGRANLVSNDVYGGACTRALSEALIVCGVAVQP
IEPPPLA
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mRNA from alignment at Ecto-sp6_S_contig96:190413..190734+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18618.1 ID=mRNA_Ecto-sp6_S_contig96.18618.1|Name=mRNA_Ecto-sp6_S_contig96.18618.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=322bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:190413..190734+ (Ectocarpus species6 EcLAC_371)
TGGCGGCCACGGGTGGGTCGCACGGCGTGCGGGTCCTTCCTGTTGGGCAG
CTCGAGCGTACGGGCCCGCGTCTTTCTCGACGTGCGGTGCGGGGGAGGCC
AGGGGTCTCCTCCCGCTCCTCGTTGGTCATCGTGGCTCCGTCCGGCCACC
ATGGCCCACACAAAGGTCTACCTGCTCGGTGTCGAGCTGTCTCCCTTCGA
GCGCGGACGCGCTAATCTGGTGTCTAACGATGTGTACGGCGGAGCTTGCA
CCCGTGCCCTCTCAGAGGCACTAATTGTTTGCGGTGTCGCCGTCCAGCCC
ATCGAGCCTCCCCCCCTCGCCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:190413..190734+

>mRNA_Ecto-sp6_S_contig96.18618.1 ID=mRNA_Ecto-sp6_S_contig96.18618.1|Name=mRNA_Ecto-sp6_S_contig96.18618.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:190413..190734+ (Ectocarpus species6 EcLAC_371)
TGGCGGCCACGGGTGGGTCGCACGGCGTGCGGGTCCTTCCTGTTGGGCAG
CTCGAGCGTACGGGCCCGCGTCTTTCTCGACGTGCGGTGCGGGGGAGGCC
AGGGGTCTCCTCCCGCTCCTCGTTGGTCATCGTGGCTCCGTCCGGCCACC
ATGGCCCACACAAAGGTCTACCTGCTCGGTGTCGAGCTGTCTCCCTTCGA
GCGCGGACGCGCTAATCTGGTGTCTAACGATGTGTACGGCGGAGCTTGCA
CCCGTGCCCTCTCAGAGGCACTAATTGTTTGCGGTGTCGCCGTCCAGCCC
ATCGAGCCTCCCCCCCTCGCC
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