mRNA_Ecto-sp6_S_contig96.18616.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18616.1
Unique NamemRNA_Ecto-sp6_S_contig96.18616.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig96.18616.1 vs. uniprot
Match: D8LH23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH23_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.360e-46
Identity = 83/86 (96.51%), Postives = 83/86 (96.51%), Query Frame = 1 
Query:   43 GWRRESHSGKKNLTEAELLEGLSLIAEISGEALVEPAEAKAGVTRAATMKLGASVLERVYAVHSALEYYLAENTNVARLYRDADDE 300
            GWRRESHSGKKNLTEAELLEGLSL AEISGEALVEPAEAKAGV RAATMK GASVLERVYAVHSALEYYLAENTNVARLYRDADDE
Sbjct:   15 GWRRESHSGKKNLTEAELLEGLSLNAEISGEALVEPAEAKAGVIRAATMKPGASVLERVYAVHSALEYYLAENTNVARLYRDADDE 100
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BLAST of mRNA_Ecto-sp6_S_contig96.18616.1 vs. uniprot
Match: A0A6H5K9E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E0_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.150e-30
Identity = 70/78 (89.74%), Postives = 72/78 (92.31%), Query Frame = 1 
Query:   67 GKKNLTEAELLEGLSLIAEISGEALVEPAEAKAGVTRAATMKLGASVLERVYAVHSALEYYLAENTNVARLYRDADDE 300
            GKK LTEAEL EGLSL AEISGEALVEPAEAKAGVTRAAT+K GASVLERVYAVHSALEYYLAEN NVARLY +ADDE
Sbjct:  105 GKKILTEAELREGLSLNAEISGEALVEPAEAKAGVTRAATVKPGASVLERVYAVHSALEYYLAENPNVARLYCNADDE 182
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BLAST of mRNA_Ecto-sp6_S_contig96.18616.1 vs. uniprot
Match: A0A6H5JNT7_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT7_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.360e-30
Identity = 66/78 (84.62%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:   67 GKKNLTEAELLEGLSLIAEISGEALVEPAEAKAGVTRAATMKLGASVLERVYAVHSALEYYLAENTNVARLYRDADDE 300
            GKK LTEA+L EGLSL AEISGEALVEPAEAKAGVTRAATMK GASVLER+YA+HSALEY+L  N NVARLYR+ADDE
Sbjct:   97 GKKILTEAKLREGLSLNAEISGEALVEPAEAKAGVTRAATMKPGASVLERIYAIHSALEYFLVVNPNVARLYRNADDE 174
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BLAST of mRNA_Ecto-sp6_S_contig96.18616.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 4.280e-28
Identity = 65/77 (84.42%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:   70 KKNLTEAELLEGLSLIAEISGEALVEPAEAKAGVTRAATMKLGASVLERVYAVHSALEYYLAENTNVARLYRDADDE 300
            KKNL EAELLEGLS+ AEIS EALV+P EAKAGVTRAATMK G SVLERVYAVHSALEYYLAE  NVARLY  ADDE
Sbjct:   69 KKNLAEAELLEGLSINAEISREALVKPVEAKAGVTRAATMKPGVSVLERVYAVHSALEYYLAEKPNVARLYHHADDE 145
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BLAST of mRNA_Ecto-sp6_S_contig96.18616.1 vs. uniprot
Match: A0A6H5L1I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1I2_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.580e-27
Identity = 66/78 (84.62%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:   67 GKKNLTEAELLEGLSLIAEISGEALVEPAEAKAGVTRAATMKLGASVLERVYAVHSALEYYLAENTNVARLYRDADDE 300
            GKK LTEAEL EGLSL AE SGEALVEPAEAKAGVTRAA+MK  ASVLERVYAVHSALE YLAEN NVA L+R+ADDE
Sbjct:   97 GKKILTEAELREGLSLNAETSGEALVEPAEAKAGVTRAASMKPSASVLERVYAVHSALECYLAENPNVAWLHRNADDE 174
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LH23_ECTSI1.360e-4696.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9E0_9PHAE1.150e-3089.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNT7_9PHAE3.360e-3084.62CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5L028_9PHAE4.280e-2884.42CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L1I2_9PHAE2.580e-2784.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:186104..186626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size302
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_010940.1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350588.006399-CDS-Ecto-sp6_S_contig96:186103..1863361682350588.006399-CDS-Ecto-sp6_S_contig96:186103..186336Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 186104..186336 -
1682350588.0165136-CDS-Ecto-sp6_S_contig96:186559..1866261682350588.0165136-CDS-Ecto-sp6_S_contig96:186559..186626Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 186560..186626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18616.1prot_Ecto-sp6_S_contig96.18616.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 186104..186626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18616.1

>prot_Ecto-sp6_S_contig96.18616.1 ID=prot_Ecto-sp6_S_contig96.18616.1|Name=mRNA_Ecto-sp6_S_contig96.18616.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=100bp
GRARRKCCTRRQCRGWRRESHSGKKNLTEAELLEGLSLIAEISGEALVEP
AEAKAGVTRAATMKLGASVLERVYAVHSALEYYLAENTNVARLYRDADDE
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mRNA from alignment at Ecto-sp6_S_contig96:186104..186626-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18616.1 ID=mRNA_Ecto-sp6_S_contig96.18616.1|Name=mRNA_Ecto-sp6_S_contig96.18616.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=523bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:186104..186626- (Ectocarpus species6 EcLAC_371)
GGCAGGGCGAGGCGGAAGTGCTGCACGCGGCGGCAGTGCCGCGGGTGGCG
ACGCGAGTCCCACTCGGGTGAGTGTGAGCGAGGTGGTGCTCGGCTCCACC
CAGAAGCCGCACGAATATGGGAAGACGATGTCCGTTGCTGCATCGAGGCG
GTTTCTGCTTCGGTACGCGGAGTATAAACGCGTGGTGGCGAGAGGCAACG
GAGGTCGGGTGGTGCAAAGGCAGCCTACGTCGATATCCGAGTTGCTGCTG
GTGCACATCCGCAAATGCTGGTCTTCTCTATACTTTGAAGGCAAGAAAAA
CCTGACGGAGGCAGAGCTGCTGGAAGGTCTGTCGCTTATCGCCGAAATTT
CGGGAGAGGCTTTGGTTGAGCCAGCCGAGGCGAAGGCGGGTGTGACCCGT
GCGGCTACCATGAAGCTGGGCGCCTCGGTGCTGGAACGAGTGTATGCTGT
TCATAGCGCGTTGGAATACTACCTGGCGGAGAACACGAATGTGGCGCGAC
TGTACCGCGACGCCGACGACGAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:186104..186626-

>mRNA_Ecto-sp6_S_contig96.18616.1 ID=mRNA_Ecto-sp6_S_contig96.18616.1|Name=mRNA_Ecto-sp6_S_contig96.18616.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:186104..186626- (Ectocarpus species6 EcLAC_371)
GGCAGGGCGAGGCGGAAGTGCTGCACGCGGCGGCAGTGCCGCGGGTGGCG
ACGCGAGTCCCACTCGGGCAAGAAAAACCTGACGGAGGCAGAGCTGCTGG
AAGGTCTGTCGCTTATCGCCGAAATTTCGGGAGAGGCTTTGGTTGAGCCA
GCCGAGGCGAAGGCGGGTGTGACCCGTGCGGCTACCATGAAGCTGGGCGC
CTCGGTGCTGGAACGAGTGTATGCTGTTCATAGCGCGTTGGAATACTACC
TGGCGGAGAACACGAATGTGGCGCGACTGTACCGCGACGCCGACGACGAA
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