mRNA_Ecto-sp6_S_contig96.18612.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18612.1
Unique NamemRNA_Ecto-sp6_S_contig96.18612.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig96.18612.1 vs. uniprot
Match: D8LH27_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH27_ECTSI)

HSP 1 Score: 367 bits (943), Expect = 1.700e-128
Identity = 179/190 (94.21%), Postives = 181/190 (95.26%), Query Frame = 1 
Query:    1 VTKSDLLETWVYAVVARQREDVMVVDESGILDNVSCEASTKGNVKSGMDCIWAPIPHLCLSQSQQEWETFMRTRGAAELGIRSATSLTFDSVQKSMRDNSEDWLRELGLDLFRARTRRFFLSNGVLWNHVQPWVKKDMNKLLNPTPDEIRRGPFIALHVADGQGNRTTASRTHRGPTMGTTHVVGLEVKR 570
            + KSDLLETWVYAVVARQREDVMVVDESGILDNVSCEASTKGNVKSGMDCIWAPIPHLCLSQSQQEWE FMRTRGAAELGIRSATSLTFDSVQKSMRDNSEDWLRELGLDLFRAR    FLSNGVLWNHVQPWVKKDMNKLLNPTPDEIRRGPFIALHVADGQGNRTTAS TH G TMGTTHVVG+EVKR
Sbjct:    1 MAKSDLLETWVYAVVARQREDVMVVDESGILDNVSCEASTKGNVKSGMDCIWAPIPHLCLSQSQQEWEMFMRTRGAAELGIRSATSLTFDSVQKSMRDNSEDWLRELGLDLFRARQ---FLSNGVLWNHVQPWVKKDMNKLLNPTPDEIRRGPFIALHVADGQGNRTTASGTHGGATMGTTHVVGIEVKR 187
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH27_ECTSI1.700e-12894.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:156168..157848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score80.5
Seed ortholog evalue9.4e-13
Seed eggNOG ortholog2880.D7G435
Model size573
KEGG koko:K00717
KEGG ReactionR05988,R09319
KEGG Pathwayko00510,ko00513,ko00533,ko01100,ko05202,map00510,map00513,map00533,map01100,map05202
KEGG ModuleM00075
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.glycoprotein 6-alpha-L-fucosyltransferase activity
EggNOG OGsKOG3705@1,KOG3705@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_010980.1
EC2.4.1.68
Cds size573
COG Functional cat.M
CAZyGT23
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350587.7345212-CDS-Ecto-sp6_S_contig96:156167..1563831682350587.7345212-CDS-Ecto-sp6_S_contig96:156167..156383Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 156168..156383 -
1682350587.747761-CDS-Ecto-sp6_S_contig96:156507..1565211682350587.747761-CDS-Ecto-sp6_S_contig96:156507..156521Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 156508..156521 -
1682350587.7557561-CDS-Ecto-sp6_S_contig96:156922..1570701682350587.7557561-CDS-Ecto-sp6_S_contig96:156922..157070Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 156923..157070 -
1682350587.7635548-CDS-Ecto-sp6_S_contig96:157653..1578481682350587.7635548-CDS-Ecto-sp6_S_contig96:157653..157848Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 157654..157848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18612.1prot_Ecto-sp6_S_contig96.18612.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 156168..157848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18612.1

>prot_Ecto-sp6_S_contig96.18612.1 ID=prot_Ecto-sp6_S_contig96.18612.1|Name=mRNA_Ecto-sp6_S_contig96.18612.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=191bp
VTKSDLLETWVYAVVARQREDVMVVDESGILDNVSCEASTKGNVKSGMDC
IWAPIPHLCLSQSQQEWETFMRTRGAAELGIRSATSLTFDSVQKSMRDNS
EDWLRELGLDLFRARTRRFFLSNGVLWNHVQPWVKKDMNKLLNPTPDEIR
RGPFIALHVADGQGNRTTASRTHRGPTMGTTHVVGLEVKR*
back to top

mRNA from alignment at Ecto-sp6_S_contig96:156168..157848-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18612.1 ID=mRNA_Ecto-sp6_S_contig96.18612.1|Name=mRNA_Ecto-sp6_S_contig96.18612.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1681bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:156168..157848- (Ectocarpus species6 EcLAC_371)
GTGACCAAATCAGACCTCCTGGAGACCTGGGTGTACGCTGTCGTTGCAAG
GCAACGCGAGGACGTGATGGTGGTGGATGAGTCTGGCATCCTTGACAACG
TCTCCTGCGAGGCTTCTACCAAGGGGAACGTCAAGTCGGGAATGGACTGC
ATCTGGGCCCCGATCCCGCACCTGTGCCTTTCCCAGAGCCAGCAGGTAGG
TGTCGTGGTTGTTTGCTGCGTCCTGTTGTGTTTGCATCCATGTTTGCGAA
GCGGGCCAGCAGCCGAGAGTGGTAGAGGTGTGCCAAGCCGCACGGAGGAC
GCCATGTACCTCGAACGGTTTTCAGTCAGTTCGGTTACCTCGGTAAATGG
GGTTACGCCCTTGGTGCTAAAATGTGCGGCTCTCATTGGCTCAAGGCTTG
CACGAAGCAAGACAACGGGGTTAGCCCCCTCAGCGATTTCGCCGTTCATG
GGACCCCCCCCCCCCTTCCTTGCAGTTCACAAACGAAGGGATAATGCAGA
ATGTCCTCGTCTTCTTCCTTTGACAATTCGACTTCGTCTATCGTTTGCGA
GCAAGATGCTTTTGGCAATGCGTGATCTACAGCAGTAGCGGCTTCCATTG
CGATCAGAACCTGACCCCCAAGGTGTCACGATGATCTCGCCGCTGTCCTT
CTGGATTCCGGCCCTCAGCTAGTATGGAGGTAAGGACAATGTCAATACTG
CCGGCGCGCTCTCTTCCGCCTCAGTTTCTCTCGCAAGTAAACCCTTCGCA
TGAAACGCTTGGCGACCTGTCCTTGCAGGAGTGGGAGACGTTCATGCGTA
CGAGAGGAGCCGCGGAGCTAGGCATTCGGTCGGCGACAAGTCTGACGTTC
GACAGCGTGCAGAAGTCGATGCGTGATAACTCGGAAGACTGGCTGCGAGA
ATTGGGCCTGGACCTCTTCAGGGCTCGTCAGGCGCGTGAACTATAGAAAC
AAAATCAAAATGTTGGAACCATAATGTTCGTGAATCGTGACATTTTTTCC
CATCTGCCAGTCTATGTTGGACAACGCATAGGCCACACACTTATGAACTT
GTCACGACAAAAAGTGGACACGTATTTAGTCCTGAGTGAACCATCCATCC
ATCACACCCTAAGTTCGCCATCTCACCCTTTCAAGTTGGTTTTCGGGAAG
TACCCAGGTGTTGAACGGTTGACTTTGGCTGGTTCGTGTAGGGTGATGCA
AATTCGTAACTTTTGCGAAGGGCTATGCATGATCGCACAGCCGTAAAGGG
TCGGGTGCGTGTTTAAACTAAATGTATGTACTTATGTAGATGTACCTAGT
TTACTTATGTAGATGTACCTAGTTTAGGCACCCGTCGGTTTGTTCCACGA
ATCGATCTCTCTTGTCCATCCGTCTTGATCCAACGCCACCCGCCGCCTTC
CCTTTGTGCGTCCGTCTTCTTCTGCCTTGAAAAACACGAACACCTCCTCG
GATCGCTGGCTGCAGTTCCTTTCGAATGGAGTTCTGTGGAACCACGTGCA
GCCGTGGGTGAAGAAGGACATGAACAAGCTGCTAAACCCTACTCCAGATG
AAATCAGGCGGGGTCCGTTTATTGCGCTACACGTGGCGGATGGGCAGGGC
AATCGGACGACAGCAAGTCGCACCCACAGGGGGCCAACGATGGGAACAAC
GCACGTCGTGGGGTTAGAGGTGAAACGTTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:156168..157848-

>mRNA_Ecto-sp6_S_contig96.18612.1 ID=mRNA_Ecto-sp6_S_contig96.18612.1|Name=mRNA_Ecto-sp6_S_contig96.18612.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:156168..157848- (Ectocarpus species6 EcLAC_371)
GTGACCAAATCAGACCTCCTGGAGACCTGGGTGTACGCTGTCGTTGCAAG
GCAACGCGAGGACGTGATGGTGGTGGATGAGTCTGGCATCCTTGACAACG
TCTCCTGCGAGGCTTCTACCAAGGGGAACGTCAAGTCGGGAATGGACTGC
ATCTGGGCCCCGATCCCGCACCTGTGCCTTTCCCAGAGCCAGCAGGAGTG
GGAGACGTTCATGCGTACGAGAGGAGCCGCGGAGCTAGGCATTCGGTCGG
CGACAAGTCTGACGTTCGACAGCGTGCAGAAGTCGATGCGTGATAACTCG
GAAGACTGGCTGCGAGAATTGGGCCTGGACCTCTTCAGGGCTCGCACCCG
TCGGTTTTTCCTTTCGAATGGAGTTCTGTGGAACCACGTGCAGCCGTGGG
TGAAGAAGGACATGAACAAGCTGCTAAACCCTACTCCAGATGAAATCAGG
CGGGGTCCGTTTATTGCGCTACACGTGGCGGATGGGCAGGGCAATCGGAC
GACAGCAAGTCGCACCCACAGGGGGCCAACGATGGGAACAACGCACGTCG
TGGGGTTAGAGGTGAAACGTTAA
back to top