mRNA_Ecto-sp6_S_contig96.18609.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18609.1
Unique NamemRNA_Ecto-sp6_S_contig96.18609.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig96.18609.1 vs. uniprot
Match: D8LH31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH31_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 7.940e-15
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 MSRQRPLFRLYLHWARPRRNLPLNLRRHLAQAQKRLDAAFPRPHLRPR 144
            MSRQRP FRLYLHWARPRRNLPLNLRRHLA+AQKR       PHLRPR
Sbjct:    1 MSRQRPHFRLYLHWARPRRNLPLNLRRHLARAQKR-------PHLRPR 41
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BLAST of mRNA_Ecto-sp6_S_contig96.18609.1 vs. uniprot
Match: A0A6H5JQG3_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG3_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.120e-9
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 2 
Query:   14 GHSFA--CTCTGHDRAGICPSTYAGTWLKLRRDLMPHF 121
            GH+FA  CT TGHDRAGICP+TYA T L+L RDLMPH+
Sbjct:   56 GHTFAYACTYTGHDRAGICPTTYAATRLELTRDLMPHY 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LH31_ECTSI7.940e-1581.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQG3_9PHAE3.120e-973.68Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:109423..111171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size246
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_011010.1
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350587.175228-CDS-Ecto-sp6_S_contig96:109422..1095451682350587.175228-CDS-Ecto-sp6_S_contig96:109422..109545Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 109423..109545 +
1682350587.1840925-CDS-Ecto-sp6_S_contig96:110147..1102431682350587.1840925-CDS-Ecto-sp6_S_contig96:110147..110243Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 110148..110243 +
1682350587.192137-CDS-Ecto-sp6_S_contig96:111144..1111711682350587.192137-CDS-Ecto-sp6_S_contig96:111144..111171Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 111145..111171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18609.1prot_Ecto-sp6_S_contig96.18609.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 109423..111171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18609.1

>prot_Ecto-sp6_S_contig96.18609.1 ID=prot_Ecto-sp6_S_contig96.18609.1|Name=mRNA_Ecto-sp6_S_contig96.18609.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=82bp
MSRQRPLFRLYLHWARPRRNLPLNLRRHLAQAQKRLDAAFPRPHLRPRLH
LHWARPRRDLPYNLRNHPARAQKLAAYLQAG*
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mRNA from alignment at Ecto-sp6_S_contig96:109423..111171+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18609.1 ID=mRNA_Ecto-sp6_S_contig96.18609.1|Name=mRNA_Ecto-sp6_S_contig96.18609.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1749bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:109423..111171+ (Ectocarpus species6 EcLAC_371)
ATGTCGCGGCAGCGGCCACTCTTTCGCCTGTACCTGCACTGGGCACGACC
GCGCCGGAATCTGCCCCTCAACCTACGCCGGCACCTGGCTCAAGCTCAGA
AGAGACTTGATGCCGCATTTCCCGTTCAGCTATTTTGTCAGGCACTAGGT
GGTCGAATTATACATATCCCGTCAAATATGCCCAGTTCACTACCATCCGG
AGTGAATTTTTTCCGCACCCAAGACCAGTCCCCCTTGTCAAGGCTACGTT
ATTCTATCCGCCTGCATATCACGGGGCTAGTAGCCATCGCCACTTCTGAA
CGAAGGGTCTAAGCTTCCCCAAGTGCTGTTTACCGAGCTCTGTTGCTGGT
TTGCTCCCTACATGCTGTGTAGGGTCATGTTATCCTTCGGAATAACTCCG
AACGGCAGGAATTGAACCGATGCGCCGGCAGGAATCCTGTAGTTTACATT
TCCGACCGTTGTTTGTCGAGAGACCCAATCAAGACTTCAAGACTTTCTCG
AGCACCCATGTCTTCCGAACGTGTTGTTGTTCTTCCAACTGCTTGAGTGC
GCGCATCCATGCCACCACGGATGGTCGTCTGTCATGCTTCCCTTTTTGGC
TCGGCTTCCCGCTCCTCCGGCTGGGGGTATGTATGTAGGGTGAAGCATGA
GTAACTGGCGAAGCTCTCGAGTGTCCCAACCCAAATACGTCCTTAAGTAC
CCGCCAACCTGGTATCTCGCGGCAGCGGCCACACTTGCGCCCGCGGCTAC
ACCTGCACTGGGCACGGCCGCGCCGGGATCTACCCTACAACCTACGCAAC
CACCCGGCTCGAGCTCAGAAGGTAAGAGACTTGATGCCACATTTCCCATT
TAACAAGGGCATGCCGTATTGTAAAAAAAGGCACTAGGCGGTCGAAAAAT
GACATATCCCCGGCTTTTCTCCAAACATGCCCAGTTCACGGCCATCCGGA
GTGATATATTTCCGCACCAAACACCGGCCGCCCTCCTCAAGGCTACGGTA
TTCCATCCGCATTGTGACGGGGCTAGTAGTCATCACCGCTAGTGAACTCG
AGGCTTCAGCTTCCCCTAGTTCTGTTTCCCACCTCTGTTGCTTGTGTGCT
TCCTACATGCGGTAGGGGTCATCGTCGTGTGTTTGTATGTCGTCACGATT
TCATATTTGAAAAAAACGCCCCTATCTCGTGGTTGATACCGAGTCGATCG
ATTTCGGCGATTTCTACCAATCTCCCCGACAATGTATTGCAGAGGATAGG
AGATGGTGTCATACGCCCAATACCCACGCGAACGCGAAATGGCGCCGCCA
ATTAGCGACCGAATACGCCTGTTTTATCATTCGCAGCGAGTTCAAATGCT
CGGCGCTGCTGTCTTGTACGGGGTTACTCTCAGCCTCAATTCTCGATTTC
TCACACCATCCCCAGTCACCGCCCTCCCACGGGTCGCGTCAGGAGAACGG
TTGCGTTGTAGAAGAGTATGCGTCATGACGCAAACGAGAATGGCTTTGCC
AACGTAAGCCCGTCTTGAAACCCCCATGGACAAAAGTATGTCTGGTCTCT
CGCTCGAAAATTTTTCTGCCCACTGTTGGCCTTTTTATTTGCGGTTCAGT
GTTGACTAATTGACCAACCCCCGTCGGTTCCCTCGTCGAATTCCCCTGCG
GTATGCTCTTCCGTAGGATTAGACGTTCGCTTGTTCAATGTGTTTTGTGT
CTACGTAAATACCTCCGCTCAGCTTGCGGCTTACCTCCAGGCAGGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:109423..111171+

>mRNA_Ecto-sp6_S_contig96.18609.1 ID=mRNA_Ecto-sp6_S_contig96.18609.1|Name=mRNA_Ecto-sp6_S_contig96.18609.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:109423..111171+ (Ectocarpus species6 EcLAC_371)
ATGTCGCGGCAGCGGCCACTCTTTCGCCTGTACCTGCACTGGGCACGACC
GCGCCGGAATCTGCCCCTCAACCTACGCCGGCACCTGGCTCAAGCTCAGA
AGAGACTTGATGCCGCATTTCCCCGGCCACACTTGCGCCCGCGGCTACAC
CTGCACTGGGCACGGCCGCGCCGGGATCTACCCTACAACCTACGCAACCA
CCCGGCTCGAGCTCAGAAGCTTGCGGCTTACCTCCAGGCAGGGTAA
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