mRNA_Ecto-sp6_S_contig96.18607.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18607.1
Unique NamemRNA_Ecto-sp6_S_contig96.18607.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig96.18607.1 vs. uniprot
Match: A0A6H5K143_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K143_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 8.440e-56
Identity = 87/101 (86.14%), Postives = 93/101 (92.08%), Query Frame = 1 
Query:    4 CGTCFRSEHPDLVETFQVRTEHFVLAELQRRMPELEGIFLSWDCPLPCAISTERADMLWQIGSVLLHVEVDETATHEDDRNRLMRLLAGTDAVDHIVVRIH 306
            CG+C RSEH DL++ F+V+TEHFVLAELQRRMPELE  FLSWDCPLPCAISTERADMLWQIGS LLHVEVDE ATHEDDR RLMRLLAGTD+VDHIVVRIH
Sbjct:  229 CGSCVRSEHLDLLKRFKVKTEHFVLAELQRRMPELENNFLSWDCPLPCAISTERADMLWQIGSTLLHVEVDEIATHEDDRKRLMRLLAGTDSVDHIVVRIH 329
[Close]
BLAST of mRNA_Ecto-sp6_S_contig96.18607.1 vs. uniprot
Match: A0A6H5L073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 1.460e-55
Identity = 93/102 (91.18%), Postives = 96/102 (94.12%), Query Frame = 1 
Query:    1 LCGTCFRSEHPDLVETFQVRTEHFVLAELQRRMPELEGIFLSWDCPLPCAISTERADMLWQIGSVLLHVEVDETATHEDDRNRLMRLLAGTDAVDHIVVRIH 306
            LCG+C RSEHPDL + F+VRTEHFVLAELQRRMPELEG FLSWDCPLP AISTERADMLWQIGSVLLHVEVDETATHEDDRNRLMRLLAGTDAV HIVVRIH
Sbjct: 2137 LCGSCLRSEHPDLAKKFKVRTEHFVLAELQRRMPELEGNFLSWDCPLPYAISTERADMLWQIGSVLLHVEVDETATHEDDRNRLMRLLAGTDAVHHIVVRIH 2238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K143_9PHAE8.440e-5686.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L073_9PHAE1.460e-5591.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:79810..80115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size306
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350586.9783864-CDS-Ecto-sp6_S_contig96:79809..801151682350586.9783864-CDS-Ecto-sp6_S_contig96:79809..80115Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 79810..80115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18607.1prot_Ecto-sp6_S_contig96.18607.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 79810..80115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18607.1

>prot_Ecto-sp6_S_contig96.18607.1 ID=prot_Ecto-sp6_S_contig96.18607.1|Name=mRNA_Ecto-sp6_S_contig96.18607.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=102bp
LCGTCFRSEHPDLVETFQVRTEHFVLAELQRRMPELEGIFLSWDCPLPCA
ISTERADMLWQIGSVLLHVEVDETATHEDDRNRLMRLLAGTDAVDHIVVR
IH
back to top

mRNA from alignment at Ecto-sp6_S_contig96:79810..80115+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18607.1 ID=mRNA_Ecto-sp6_S_contig96.18607.1|Name=mRNA_Ecto-sp6_S_contig96.18607.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=306bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:79810..80115+ (Ectocarpus species6 EcLAC_371)
CTATGTGGCACCTGCTTTCGAAGCGAGCACCCCGATCTGGTCGAAACATT
TCAAGTACGGACCGAGCACTTTGTCCTGGCGGAGCTGCAGAGACGGATGC
CCGAGTTGGAAGGCATTTTTCTCTCGTGGGACTGCCCTCTTCCGTGTGCG
ATATCGACGGAGAGAGCCGATATGTTGTGGCAGATTGGATCGGTTTTGCT
GCATGTGGAAGTGGACGAGACGGCGACGCACGAAGACGACCGCAACCGGC
TTATGCGCCTCTTAGCGGGAACGGATGCCGTTGATCACATCGTAGTGAGA
ATCCAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:79810..80115+

>mRNA_Ecto-sp6_S_contig96.18607.1 ID=mRNA_Ecto-sp6_S_contig96.18607.1|Name=mRNA_Ecto-sp6_S_contig96.18607.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:79810..80115+ (Ectocarpus species6 EcLAC_371)
CTATGTGGCACCTGCTTTCGAAGCGAGCACCCCGATCTGGTCGAAACATT
TCAAGTACGGACCGAGCACTTTGTCCTGGCGGAGCTGCAGAGACGGATGC
CCGAGTTGGAAGGCATTTTTCTCTCGTGGGACTGCCCTCTTCCGTGTGCG
ATATCGACGGAGAGAGCCGATATGTTGTGGCAGATTGGATCGGTTTTGCT
GCATGTGGAAGTGGACGAGACGGCGACGCACGAAGACGACCGCAACCGGC
TTATGCGCCTCTTAGCGGGAACGGATGCCGTTGATCACATCGTAGTGAGA
ATCCAC
back to top