mRNA_Ecto-sp6_S_contig95.18596.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig95.18596.1 vs. uniprot
Match: D7FMS9_ECTSI (Rubredoxin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS9_ECTSI) HSP 1 Score: 667 bits (1720), Expect = 1.150e-234 Identity = 357/397 (89.92%), Postives = 359/397 (90.43%), Query Frame = 3
Query: 195 MLGLVLALALGANTHAFVVTTQQHRPTLSSCARGQSSSPAVPVGDGQARSYSRLRRTGGYAVSPSGNTKNRLSTCMRVRRPGGGDVEIEGVGGETRRVQQRSRRRPDLRQIGLQTAAAVVVQQDEVVDVAEEQAGAEGDTIGEESGEEFMNLADSFDASQRLVEESMMDPQTGTIQDQYTKLYMPMDGLVIKKTYGFWTWQVFGLIFVQHFVRNLVRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKDDPHNQKRLEKMAANVAGPGKADGEGGXXXXXXXXXXXGEVVASATAGAPSTVSTAEATKAAPAPXXAAXXSGAPEQAPPESSGKNPTAEGADGAXXXXXXLLDM 1385
MLGLVLALALGANTHAFVVTTQQHRP LSSCARGQSSSP VPVGDG ARSYSRLRRTGGYAVSPSGNTKNRLSTCMRVRRPGGGDVEIEGVGGETRRVQQRSRRRPDLRQIGLQTAAAVVVQQDEVVDVAEEQAGAEGDTIGEESGEEFMNLA+SFDASQRLVEESMMDPQTGTIQDQYTKLYMPMDGLVIKKTYGFWTWQVFG IFVQHFVRNLVRKGGSLKKTSMSEL WDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDK+DPHNQKRLEKMAANVAGPGKADGEGG GEVVASATAGAPSTVSTAEATKAA XX XX SSGKNPTAE ADGA LLDM
Sbjct: 1 MLGLVLALALGANTHAFVVTTQQHRPALSSCARGQSSSP-VPVGDGPARSYSRLRRTGGYAVSPSGNTKNRLSTCMRVRRPGGGDVEIEGVGGETRRVQQRSRRRPDLRQIGLQTAAAVVVQQDEVVDVAEEQAGAEGDTIGEESGEEFMNLAESFDASQRLVEESMMDPQTGTIQDQYTKLYMPMDGLVIKKTYGFWTWQVFGFIFVQHFVRNLVRKGGSLKKTSMSELKWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKNDPHNQKRLEKMAANVAGPGKADGEGGGSEDADDGSSEGEVVASATAGAPSTVSTAEATKAAXXXXXXXXXXXXXXXXXXXSSGKNPTAEEADGADDDDDDLLDM 396
BLAST of mRNA_Ecto-sp6_S_contig95.18596.1 vs. uniprot
Match: A0A836CG96_9STRA (Rubredoxin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG96_9STRA) HSP 1 Score: 115 bits (288), Expect = 2.020e-25 Identity = 56/118 (47.46%), Postives = 77/118 (65.25%), Query Frame = 3
Query: 795 QVFGLIFVQHFVRNLVRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKDDPHNQKR-LEKMAANVAGPGKADGE 1145
Q+F + F VRKG S+++ EL W+++VTE EH+ EL AY CE+CGYTLFPAR RH+ FF++V+D+ CPEC A +S F D +D DP N R E++ A +A KA+ E
Sbjct: 7 QIFVPFVIVQFFITWVRKGFSIRRVMAPELKWEYLVTEKEHIKELHAYRCEQCGYTLFPARNRHKKFFEDVKDYTCPECGAAKSEFVDIHDLTDPRNIDRPREELEAALAAKIKAEAE 124
BLAST of mRNA_Ecto-sp6_S_contig95.18596.1 vs. uniprot
Match: A0A7S2D095_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D095_9EUKA) HSP 1 Score: 86.3 bits (212), Expect = 1.260e-14 Identity = 46/109 (42.20%), Postives = 60/109 (55.05%), Query Frame = 3
Query: 771 KTYGFWTWQVFGLIFVQHFVRNLVRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKDDPHNQKRL 1097
KT WT +F L+ V+ VR + G+L+ E N+ +I EL +CCE CGYT+FPARGR FF + FKCP CD+P+ SFFD D DP + L
Sbjct: 121 KTSFLWTGIIFTLLIVK-IVR--MAAAGNLRAAFFEEPNYKYIARSDAEEAELHEFCCETCGYTMFPARGREGKFFPDA--FKCPNCDSPKESFFDMTDLSDPRTIEAL 224
BLAST of mRNA_Ecto-sp6_S_contig95.18596.1 vs. uniprot
Match: A0A0G4GWS9_VITBC (Rubredoxin-like domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GWS9_VITBC) HSP 1 Score: 77.8 bits (190), Expect = 2.840e-12 Identity = 46/107 (42.99%), Postives = 58/107 (54.21%), Query Frame = 3
Query: 828 VRNLVRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKDDPHNQKRLEKMAANVAGPGKADGEG 1148
V NLV + G+ K+T I+ E EL + CE CGYT+FPARGR FF + DF+CP C A + F+D ND DDPHN+ E +A P K EG
Sbjct: 114 VLNLVTRSGA-KRTKA-------IIKTEEDAKELHRFTCENCGYTIFPARGREGKFFGD--DFECPVCGAKKEHFYDGNDPDDPHNKAPEEGESA----PDKKPAEG 206
BLAST of mRNA_Ecto-sp6_S_contig95.18596.1 vs. uniprot
Match: A0A7J7IMV8_9RHOD (Rubredoxin-like domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IMV8_9RHOD) HSP 1 Score: 75.9 bits (185), Expect = 1.970e-11 Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 3
Query: 792 WQVFGLIFV-QHFVRNLVRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKDDPHNQKRLEK 1103
W + G+ V + +R LVR+ KK + + E + EL Y C +CGYTL+PARGR FF + FKCP+C AP+S F+D ND +DP NQ+ E+
Sbjct: 142 WFLMGIFIVFLNVLRRLVRR----KKAENVPIGSEKYRAESDE--ELHVYRCGQCGYTLYPARGRELKFFPKT--FKCPQCSAPKSEFWDLNDPNDPRNQETDEE 238
BLAST of mRNA_Ecto-sp6_S_contig95.18596.1 vs. uniprot
Match: A0A8J6CCP8_DIALT (Rubredoxin-like domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCP8_DIALT) HSP 1 Score: 72.4 bits (176), Expect = 9.800e-11 Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 3
Query: 924 ELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKDDPHNQKRLEKMAANV 1118
ELKA+ CE CGY L+PARGR FF + FKCP C +P+ SF+D ND +DP N + ++ A+
Sbjct: 144 ELKAFKCENCGYELYPARGREGKFFPDT--FKCPMCKSPKESFYDMNDANDPRNWEEDDENGADA 206
BLAST of mRNA_Ecto-sp6_S_contig95.18596.1 vs. uniprot
Match: A0A7S1U8S4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8S4_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.490e-8 Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 3
Query: 879 ELNWDHIVTEPEHLLE--LKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKDDPHNQKRLEKMAANVAGPGK 1133
E NWD + +E L + CE+CG+T++PARGR FF + F CP C A + SF+D ND DP NQ+ E + PGK
Sbjct: 134 EPNWDAAELQATGEVEDVLHMFRCEDCGFTIYPARGREGKFFPKG--FTCPNCSASQESFYDLNDPTDPRNQE--EXXXXDAGPPGK 216
BLAST of mRNA_Ecto-sp6_S_contig95.18596.1 vs. uniprot
Match: M1VCH9_CYAM1 (Rubredoxin-like domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1VCH9_CYAM1) HSP 1 Score: 64.7 bits (156), Expect = 1.150e-7 Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 3
Query: 924 ELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDAND 1067
EL Y C +CGYTL+PARGR FF FKCP+C AP+S F+D ND
Sbjct: 182 ELHVYRCGKCGYTLYPARGRELKFFPRT--FKCPQCSAPKSEFWDLND 227
BLAST of mRNA_Ecto-sp6_S_contig95.18596.1 vs. uniprot
Match: A0A7S0E573_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E573_9EUKA) HSP 1 Score: 61.6 bits (148), Expect = 9.710e-7 Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 3
Query: 912 EHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKDDPHNQKRLEKM 1106
E EL + CE+CG+TLFPARGR FF + F+CP C+A + FFD D D ++ LE M
Sbjct: 148 EEEAELHEFVCEDCGFTLFPARGREGKFFSDS--FRCPTCNAAKEKFFDLTDVTD---ERSLEYM 207 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig95.18596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig95.18596.1 >prot_Ecto-sp6_S_contig95.18596.1 ID=prot_Ecto-sp6_S_contig95.18596.1|Name=mRNA_Ecto-sp6_S_contig95.18596.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=398bp MLGLVLALALGANTHAFVVTTQQHRPTLSSCARGQSSSPAVPVGDGQARSback to top mRNA from alignment at Ecto-sp6_S_contig95:553065..561810- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig95.18596.1 ID=mRNA_Ecto-sp6_S_contig95.18596.1|Name=mRNA_Ecto-sp6_S_contig95.18596.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8746bp|location=Sequence derived from alignment at Ecto-sp6_S_contig95:553065..561810- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig95:553065..561810- >mRNA_Ecto-sp6_S_contig95.18596.1 ID=mRNA_Ecto-sp6_S_contig95.18596.1|Name=mRNA_Ecto-sp6_S_contig95.18596.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1194bp|location=Sequence derived from alignment at Ecto-sp6_S_contig95:553065..561810- (Ectocarpus species6 EcLAC_371)back to top |