mRNA_Ecto-sp6_S_contig95.18595.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig95.18595.1
Unique NamemRNA_Ecto-sp6_S_contig95.18595.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig95.18595.1 vs. uniprot
Match: D7FMS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS8_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 5.160e-100
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1 
Query:    1 VVDLVSSLEALRDLDLRGNIVSRMAKYFERAVTRCGDLLATLDGKPVHAQHRSMLQRLDRHKRSEARKSAAKTLARSNTHAPIAEPGAQREDSARLHDGDFSKGHSHSEHQDPAKKSSMLDLNPSLRTTRAGVRFASSVGTSSSTSQDDRDKPLISWASSR 483
            VVDLVSSLEALRDLDLRGNIVSRMAKYFERAVTRCGDLLATLDGKPVHAQHRSMLQRLDRHKRSEARKSAAKTLARSNTHAPIAEPGAQREDSARLHDGDFSKGHSHSEHQDPAKKSSMLDLNPSLRTTRAGVRFASSVGTSSSTSQDDRDKPLISWASSR
Sbjct:  211 VVDLVSSLEALRDLDLRGNIVSRMAKYFERAVTRCGDLLATLDGKPVHAQHRSMLQRLDRHKRSEARKSAAKTLARSNTHAPIAEPGAQREDSARLHDGDFSKGHSHSEHQDPAKKSSMLDLNPSLRTTRAGVRFASSVGTSSSTSQDDRDKPLISWASSR 371
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig95.18595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMS8_ECTSI5.160e-100100.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig95contigEcto-sp6_S_contig95:551349..552773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score269.2
Seed ortholog evalue1e-69
Seed eggNOG ortholog2880.D7FMS8
Model size800
KEGG koko:K17579
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2CZ6V@1,2S8SX@2759
Cds size417
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350585.0015376-UTR-Ecto-sp6_S_contig95:551348..5514171682350585.0015376-UTR-Ecto-sp6_S_contig95:551348..551417Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig95 551349..551417 +
1682350585.03447-UTR-Ecto-sp6_S_contig95:552459..5527731682350585.03447-UTR-Ecto-sp6_S_contig95:552459..552773Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig95 552460..552773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350585.0106149-CDS-Ecto-sp6_S_contig95:551417..5514491682350585.0106149-CDS-Ecto-sp6_S_contig95:551417..551449Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 551418..551449 +
1682350585.0184708-CDS-Ecto-sp6_S_contig95:551804..5519631682350585.0184708-CDS-Ecto-sp6_S_contig95:551804..551963Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 551805..551963 +
1682350585.026267-CDS-Ecto-sp6_S_contig95:552233..5524591682350585.026267-CDS-Ecto-sp6_S_contig95:552233..552459Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 552234..552459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig95.18595.1prot_Ecto-sp6_S_contig95.18595.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig95 551418..552459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig95.18595.1

>prot_Ecto-sp6_S_contig95.18595.1 ID=prot_Ecto-sp6_S_contig95.18595.1|Name=mRNA_Ecto-sp6_S_contig95.18595.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=139bp
MAKYFERAVTRCGDLLATLDGKPVHAQHRSMLQRLDRHKRSEARKSAAKT
LARSNTHAPIAEPGAQREDSARLHDGDFSKGHSHSEHQDPAKKSSMLDLN
PSLRTTRAGVRFASSVGTSSSTSQDDRDKPLISWASSR*
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mRNA from alignment at Ecto-sp6_S_contig95:551349..552773+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig95.18595.1 ID=mRNA_Ecto-sp6_S_contig95.18595.1|Name=mRNA_Ecto-sp6_S_contig95.18595.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1425bp|location=Sequence derived from alignment at Ecto-sp6_S_contig95:551349..552773+ (Ectocarpus species6 EcLAC_371)
GTGGTTGATCTGGTGAGCAGCCTGGAGGCGCTGAGGGACCTAGACCTCAG
AGGAAACATCGTCAGTCGCATGGCCAAGTACTTCGAGAGAGCCGTCACGA
GGTGAAGATTGACGGACGGAGCATTTCTCATGCACGGCTGCTTTGTCGCC
AAGTCAAGTACAACCTGTACTGTTGTTCCTCTGCCAGGCGTACTCCTCTT
GCGAGTGGAACAACCGCTGCCTGAGGCAACAGTTTTCAAGAAGCAAATAC
ATGGTCTAGTCCATGGCCGTGCATTTATTGTTGGTAGGAACCGCTCGCAC
GTATGTTGTCCTCGACGATGACAGGACACTCCACACTCTCGGTTAATCCA
ATTTCGGGGTACACAAGCGCGGGGATGAGCGAACGATACCGACTGATCAA
TCGATGCGCTGACCCTTGCAACCGGGATCTCTGCCAACGGATGCACGCCC
ATCAAGGTGTGGAGACCTCTTGGCGACCCTAGACGGCAAACCGGTGCATG
CGCAACACCGCTCGATGCTGCAACGGCTAGACCGCCACAAGCGTTCGGAG
GCTAGGAAGTCCGCCGCTAAAACCCTCGCCCGCTCCAACACCCACGCGCC
CATTGCAGAACCCGGGTGGGTGAAGTGTATAGTACAAGAAGTGTGGTAAC
TCTAGGCGCAATGCACTACTAATCGTTCTCCGACTATTGTGCCGGTAGAT
GTACACACCTACACTAGTCTACATGTAGCTACGGCGGACATGACAGGCTC
GTGCGACACGTTGCATTCACATCAAGGACAGATTCATTCGTTCACACCCT
TCGCCTGTATGTAGCATGATAGTTAGTGCATTGGGTATACCTCACGCTCA
TGAGCACACGATATGCGTCTCTTTCCTGCTAACAGGGCCCAACGCGAAGA
CTCAGCGAGGCTCCACGACGGGGACTTCTCCAAGGGCCACAGCCACAGCG
AGCATCAAGACCCGGCAAAAAAGTCTTCGATGCTGGACCTAAACCCTTCC
TTGCGCACAACGCGCGCGGGGGTGCGCTTTGCCAGCAGCGTAGGCACTTC
TAGTAGTACCAGTCAAGATGATCGCGACAAGCCGTTGATTTCTTGGGCGA
GCTCGCGGTAAATGGCCCTCAAAGGCTTGTCAATGTGAGGATCTCCCGAT
GCTTTCTTCTTGAGCTTCGCTCTGGGTCGGTTTCGAGAGCACTTCACAAT
CAGAACCGGCCGCTCAGTGCTTGGGCGAGTTCGGCGTACAGTATTTATTG
TAGTGTCTCTTGAAGTAAGAGTGCGGTCATCAAAGGCTTGGGAATGGGAG
GGGGGACAGAAGCGATGTTTGTGGATTTCGCGTCGGTTATTATATGCCTA
GAGAGACGTTATCGTTTGTTTCGTTGCTTCTCAGTTCTTACCTTATGTTA
CAGCAGGGACTAGCCTACAGTCCAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig95:551349..552773+

>mRNA_Ecto-sp6_S_contig95.18595.1 ID=mRNA_Ecto-sp6_S_contig95.18595.1|Name=mRNA_Ecto-sp6_S_contig95.18595.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp6_S_contig95:551349..552773+ (Ectocarpus species6 EcLAC_371)
ATGGCCAAGTACTTCGAGAGAGCCGTCACGAGGTGTGGAGACCTCTTGGC
GACCCTAGACGGCAAACCGGTGCATGCGCAACACCGCTCGATGCTGCAAC
GGCTAGACCGCCACAAGCGTTCGGAGGCTAGGAAGTCCGCCGCTAAAACC
CTCGCCCGCTCCAACACCCACGCGCCCATTGCAGAACCCGGGGCCCAACG
CGAAGACTCAGCGAGGCTCCACGACGGGGACTTCTCCAAGGGCCACAGCC
ACAGCGAGCATCAAGACCCGGCAAAAAAGTCTTCGATGCTGGACCTAAAC
CCTTCCTTGCGCACAACGCGCGCGGGGGTGCGCTTTGCCAGCAGCGTAGG
CACTTCTAGTAGTACCAGTCAAGATGATCGCGACAAGCCGTTGATTTCTT
GGGCGAGCTCGCGGTAA
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