mRNA_Ecto-sp6_S_contig95.18581.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig95.18581.1
Unique NamemRNA_Ecto-sp6_S_contig95.18581.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig95.18581.1 vs. uniprot
Match: D7FMS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS0_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 9.770e-33
Identity = 69/93 (74.19%), Postives = 74/93 (79.57%), Query Frame = 2 
Query:  209 RSGTAYLGFVTTACAGRWKAFALDGTWTSRLWCPRQTARVRLELNQSAVVMTARATMHANSTRKLSHTRRLKLHTCWFQRLVMPTRQMQVHRT 487
            RS T  L F  ++   R K FALDGTWTSRLWCPR+  RVRLEL+QSAVVMTARATMHANSTRKLSHTR LKLH CW QRLVMP RQMQ  +T
Sbjct:   12 RSSTDTLDFPASSWGQR-KDFALDGTWTSRLWCPRKAVRVRLELSQSAVVMTARATMHANSTRKLSHTRWLKLHRCWLQRLVMPIRQMQHTQT 103
[Close]
BLAST of mRNA_Ecto-sp6_S_contig95.18581.1 vs. uniprot
Match: A0A6H5JUG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.280e-17
Identity = 75/216 (34.72%), Postives = 96/216 (44.44%), Query Frame = 1 
Query:   79 HIAHLSLSMVASMDDPSAYGLYDKLRNACNSTRPAGSLAIPPLEEWDGLSGICDNGLCRTMESLCSGRNLDF----------SFMVSSADGAGTSG-------------------------AEPVGGCDDC----TRDDARQQHA-----------EVVAHTA------------AQAAHVLVSTPCHAHPADAGAQDEFIAAEDWLDVAHATLDS 540
            H+AH+ LS+ AS+ D    GLY++LRNACN TRP GSLA PPLEEW G+S  CDN  CR++E+L + R +D           +    S +  G++                           E   GCD      +++D   + A           E V   A            A+A  VL S     H AD  AQD  IAAEDW DV HA L S
Sbjct:  412 HMAHVMLSVAASVGDSRDGGLYNRLRNACNLTRPQGSLAFPPLEEWQGISAFCDNVPCRSIEALFARRKVDLPPTAPLEDIKTLRPESLESIGSAKDYQTFSTLPSALRTPSAIDTFLAVVGEAQQGCDGAMDTLSQEDLLLEEASASPSLVNIRVETVGDAAEDCTCSDEGVPPAEAEEVLPS-----HAADEDAQDHVIAAEDWFDVIHAMLAS 622
[Close]
BLAST of mRNA_Ecto-sp6_S_contig95.18581.1 vs. uniprot
Match: D7FMS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS1_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.870e-12
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:  136 GLYDKLRNACNSTRPAGSLAIPPLEEWDGLSGICDNGLCRTMESLCSGRNLDF 294
            GLYD+LRNACN TRP GSLA PPLEEW G+S  CDN  CR++E+L + R  D 
Sbjct:  322 GLYDRLRNACNLTRPPGSLAFPPLEEWQGISAFCDNVPCRSIEALFARRKADL 374
[Close]
BLAST of mRNA_Ecto-sp6_S_contig95.18581.1 vs. uniprot
Match: D8LU09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU09_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 5.490e-12
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:   79 HIAHLSLSMVASMDDPSAYGLYDKLRNACNSTRPAGSLAIPPLEEWDGLSGICDNGLCRTMESLCSGRNLDFSFMVSSADG 321
            H AH+ L  +A++ D SA  +YD+LR + NS RPAGSL +PPLEEW G+   CD+  CR ME L +  +L  +F     DG
Sbjct:  345 HKAHIMLVCLAAIGDSSARAMYDRLRGSYNSFRPAGSLPVPPLEEWQGVGAFCDDFYCRAMEGLVAS-DLMKAFSAPCVDG 424
[Close]
BLAST of mRNA_Ecto-sp6_S_contig95.18581.1 vs. uniprot
Match: D8LU16_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU16_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.300e-11
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:   79 HIAHLSLSMVASMDDPSAYGLYDKLRNACNSTRPAGSLAIPPLEEWDGLSGICDNGLCRTMESLCSGRNLDFSFMVSSAD----GAGTSGAE 342
            H AH+ L  +A++ DP A  +YD LR   NS RPAGSL +PPLEEW G+   CD+  CR +E L +  ++  +F   S D    G GT+G +
Sbjct:  339 HNAHIVLVCLAAISDPRARAMYDSLRATYNSFRPAGSLPVPPLEEWHGVDVFCDDCYCRAIEQLVASEHIT-TFSAPSVDTIDVGDGTNGTD 429
[Close]
BLAST of mRNA_Ecto-sp6_S_contig95.18581.1 vs. uniprot
Match: D8LU28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU28_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 6.700e-10
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   79 HIAHLSLSMVASMDDPSAYGLYDKLRNACNSTRPAGSLAIPPLEEWDGLSGICDNGLCRTMESL 270
            HIAH  L  +A++DD  A GLY++LR+  N +RP+ SL  PPLEEW G+S  CD+  CR  E +
Sbjct:  320 HIAHGILGSLAAIDDSRAGGLYNRLRDVYNPSRPSSSLPAPPLEEWRGISAFCDDFQCRLTEGM 383
[Close]
BLAST of mRNA_Ecto-sp6_S_contig95.18581.1 vs. uniprot
Match: D8LU19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU19_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.780e-8
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   79 HIAHLSLSMVASMDDPSAYGLYDKLRNACNSTRPAGSLAIPPLEEWDGLSGICDNGLCRTMESLCSGRNL 288
            H+A   L  +A++DD  A GLY +LR   N +RP+ SL  PPLEEW G+S  CD+  CR  E + + + L
Sbjct:  322 HLAQCVLGALAAIDDSRARGLYARLREVYNPSRPSYSLPAPPLEEWRGISAFCDDFQCRIYECIITSQAL 391
[Close]
BLAST of mRNA_Ecto-sp6_S_contig95.18581.1 vs. uniprot
Match: A0A6H5KJH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.470e-8
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = -3 
Query: 1460 YHTCGQFSVFSRCRQTRRTVLLFLPSATAPGAPSY 1564
            YHT GQF+VF RCRQTRR VLLFLPS TAPGAPSY
Sbjct:   32 YHTRGQFTVFYRCRQTRRAVLLFLPSTTAPGAPSY 66
[Close]
BLAST of mRNA_Ecto-sp6_S_contig95.18581.1 vs. uniprot
Match: D8LU17_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU17_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 7.550e-8
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   79 HIAHLSLSMVASMDDPSAYGLYDKLRNACNSTRPAGSLAIPPLEEWDGLSGICDNGLC 252
            H+AH  L  +A++DD S+ GLY +LR   N +RP+ SL  PP EEW G+S  CD+  C
Sbjct:  464 HLAHSVLGALAAIDDSSSRGLYTRLREVYNPSRPSSSLPAPPWEEWRGISAFCDDFQC 521
[Close]
BLAST of mRNA_Ecto-sp6_S_contig95.18581.1 vs. uniprot
Match: D8LU22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU22_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 9.820e-7
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:    4 GLSDLSRLPDA*YDRLFDFSLW*REHIAHLSLSMVASMDDPSAYGLYDKLRNACNSTRPAGSLAIPPLEEWDGLSGICDN 243
            GL D   L DA  DR          H+AH  L+ +A++DD  A GLY++L+   NS+RP  SL  PPL++   +SG CD+
Sbjct:  274 GLIDFEHLQDA-ADR---------SHVAHGILAALAAIDDSRARGLYNRLQEVYNSSRPPASLPAPPLQQSQRVSGFCDD 343
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig95.18581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FMS0_ECTSI9.770e-3374.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUG6_9PHAE3.280e-1734.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS1_ECTSI3.870e-1264.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU09_ECTSI5.490e-1246.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU16_ECTSI1.300e-1143.48Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU28_ECTSI6.700e-1050.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU19_ECTSI1.780e-844.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJH7_9PHAE2.470e-885.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU17_ECTSI7.550e-848.28Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU22_ECTSI9.820e-741.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig95contigEcto-sp6_S_contig95:378631..380507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1566
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_000410.1
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350583.645483-UTR-Ecto-sp6_S_contig95:378630..3796761682350583.645483-UTR-Ecto-sp6_S_contig95:378630..379676Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig95 378631..379676 -
1682350583.6742344-UTR-Ecto-sp6_S_contig95:380389..3805071682350583.6742344-UTR-Ecto-sp6_S_contig95:380389..380507Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig95 380390..380507 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350583.6554072-CDS-Ecto-sp6_S_contig95:379676..3799421682350583.6554072-CDS-Ecto-sp6_S_contig95:379676..379942Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 379677..379942 -
1682350583.6645598-CDS-Ecto-sp6_S_contig95:380253..3803891682350583.6645598-CDS-Ecto-sp6_S_contig95:380253..380389Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 380254..380389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig95.18581.1prot_Ecto-sp6_S_contig95.18581.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig95 379677..380389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig95.18581.1

>prot_Ecto-sp6_S_contig95.18581.1 ID=prot_Ecto-sp6_S_contig95.18581.1|Name=mRNA_Ecto-sp6_S_contig95.18581.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=134bp
MTPVLMGCTTSFGTLAIARGPQARWPFRRWRSGTAYLGFVTTACAGRWKA
FALDGTWTSRLWCPRQTARVRLELNQSAVVMTARATMHANSTRKLSHTRR
LKLHTCWFQRLVMPTRQMQVHRTSSLLRKTGWT*
back to top

mRNA from alignment at Ecto-sp6_S_contig95:378631..380507-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig95.18581.1 ID=mRNA_Ecto-sp6_S_contig95.18581.1|Name=mRNA_Ecto-sp6_S_contig95.18581.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1877bp|location=Sequence derived from alignment at Ecto-sp6_S_contig95:378631..380507- (Ectocarpus species6 EcLAC_371)
TATGGGCTTTCTGACCTCTCTCGTTTGCCCGATGCTTGATATGATCGCTT
GTTCGATTTTTCGTTGTGGTGAAGAGAACACATAGCGCACCTATCGTTAT
CGATGGTAGCAAGCATGGATGACCCCAGTGCTTATGGGCTGTACGACAAG
CTTCGGAACGCTTGCAATAGCACGCGGCCCGCAGGCTCGTTGGCCATTCC
GCCGTTGGAGGAGTGGGACGGCTTATCTGGGATTTGTGACAACGGCCTGT
GCAGGTTTGTTCAGATTGGGACTGTGGTGTGCGTGCTTCATCCCTACTCC
TGTCGAGGAAAGTTCACCAGTGAAATGGTTTCTAACGCCGCATGGGTGCC
CGAAGCTTTCTTCCCACCTGTCATGAGTGCATTATGAAGTATTTTTGAGA
TAGCTGTGAAAGCGTTCTACGCATAGTCAACTGCTCGCCTGTGTTGCATC
AAGACTTAACCATCGATGGTCATTGCAGTAGCATCCTTCAAGAAGGGGCA
ACTGTACGTTTTACCTTTCACCTGGTGCACACGTACGTCCCCACACGCAC
CCTTTCATTGGTCAGGACGATGGAAAGCCTTTGCTCTGGACGGAACTTGG
ACTTCTCGTTTATGGTGTCCTCGGCAGACGGCGCGGGTACGTCTGGAGCT
GAACCAGTCGGCGGTTGTGATGACTGCACGCGCGACGATGCACGCCAACA
GCACGCGGAAGTTGTCGCACACACGGCGGCTCAAGCTGCACACGTGTTGG
TTTCAACGCCTTGTCATGCCCACCCGGCAGATGCAGGTGCACAGGACGAG
TTCATTGCTGCGGAAGACTGGTTGGACGTAGCACACGCCACACTAGATTC
GCCTTGATATGGAGAAGATCGGTTAGTGACGCCCTGTCGACCTGCCTGGG
TATCTATCGTCAACCATCAACCGTGATCAACAGCGTCTCGTGCGTCTCGT
TCCTACAAATCGAGGGCGTGATGTTTTCAAGCAAATCATACATGTGGGAG
ACGTAAATAGTGGTGAACCCAGCATATGCAAACCCGACGGCTAAAAATAT
TTGTGTTCGACGATAACCCCCTGATCGGCTGTAGTGCATTCGATGTGCGT
GTACGCCGATGCTCGGCGAGATTTGGAGATTGGAGGTTTAGAAGCTGTGC
TCCTGCTTGTGATTGGAGATTTGGCGACTCCACCGAAAACAAAAATTGTC
CTCGGCTTCGGAGCAACCTTGAGAGATGTGTGCGTGTGCGAACTTGCAAG
AATAGTGCTGATGTCCACTTGTTCGATACGCGTCCATCCTGATGCTTGAT
TATAGAGAGTTGGAGGTTGAGGTTGAGCGCGTGACAGCGTTATTGATTGG
TTGAAGATTTGGCGCCTCTGCTTTCATAGAGGTCCGCTCTGTAGATTCCT
CGACTGAAACGAGCTTCTGAGATGTGTGCGTGCGCGAACTTACAATGTGT
AAGTTTGATGTTGTGTTGCCCATTCGATGTGCGTGTACGCCGATGCTTGG
AGAGAGCTGGAGGTTGGATGTTAGAGCTAGCTGTCAACGTTGACGGTTAT
GTTTTGGTAGAAGTGCCTCTACCATACTAGATTCTCGCCACATATGTACC
TCGGCTGCAACAAACTTCCGAGATGTGTGCGTGCGCGAACCTACAAAAAC
ATAGATGTCAGCCCATTCGATATGAATGAGTGGACGCGGATGTGATAATA
ATGGGGGGTTGGAGGTTGGAGCTTGTCAGCAGCGTTCATGATGGAAGATT
TGGTGCATCTACCCTGTCGGATAGCTTGGTGCGCCCGGCGCAGTTGCAGA
CGGCAAAAATAAGAGAACCGTGCGGCGAGTTTGCCGGCAACGAGAAAACA
CAGAAAACTGCCCACAGGTGTGGTAAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig95:378631..380507-

>mRNA_Ecto-sp6_S_contig95.18581.1 ID=mRNA_Ecto-sp6_S_contig95.18581.1|Name=mRNA_Ecto-sp6_S_contig95.18581.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp6_S_contig95:378631..380507- (Ectocarpus species6 EcLAC_371)
ATGACCCCAGTGCTTATGGGCTGTACGACAAGCTTCGGAACGCTTGCAAT
AGCACGCGGCCCGCAGGCTCGTTGGCCATTCCGCCGTTGGAGGAGTGGGA
CGGCTTATCTGGGATTTGTGACAACGGCCTGTGCAGGACGATGGAAAGCC
TTTGCTCTGGACGGAACTTGGACTTCTCGTTTATGGTGTCCTCGGCAGAC
GGCGCGGGTACGTCTGGAGCTGAACCAGTCGGCGGTTGTGATGACTGCAC
GCGCGACGATGCACGCCAACAGCACGCGGAAGTTGTCGCACACACGGCGG
CTCAAGCTGCACACGTGTTGGTTTCAACGCCTTGTCATGCCCACCCGGCA
GATGCAGGTGCACAGGACGAGTTCATTGCTGCGGAAGACTGGTTGGACGT
AG
back to top