mRNA_Ecto-sp6_S_contig95.18564.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig95.18564.1
Unique NamemRNA_Ecto-sp6_S_contig95.18564.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig95.18564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig95contigEcto-sp6_S_contig95:82255..89829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size252
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size168
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350581.3922727-UTR-Ecto-sp6_S_contig95:82254..822971682350581.3922727-UTR-Ecto-sp6_S_contig95:82254..82297Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig95 82255..82297 -
1682350581.4064145-UTR-Ecto-sp6_S_contig95:85855..858961682350581.4064145-UTR-Ecto-sp6_S_contig95:85855..85896Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig95 85856..85896 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350581.4177163-CDS-Ecto-sp6_S_contig95:85896..859891682350581.4177163-CDS-Ecto-sp6_S_contig95:85896..85989Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 85897..85989 -
1682350581.4282866-CDS-Ecto-sp6_S_contig95:89754..898291682350581.4282866-CDS-Ecto-sp6_S_contig95:89754..89829Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 89755..89829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig95.18564.1prot_Ecto-sp6_S_contig95.18564.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig95 85897..89829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig95.18564.1

>prot_Ecto-sp6_S_contig95.18564.1 ID=prot_Ecto-sp6_S_contig95.18564.1|Name=mRNA_Ecto-sp6_S_contig95.18564.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=56bp
MRRSCSECGRKKKSCDGDLVGKTQSQQHQEYKAVLESRVRGSPEHRSGLP
TFFYG*
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mRNA from alignment at Ecto-sp6_S_contig95:82255..89829-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig95.18564.1 ID=mRNA_Ecto-sp6_S_contig95.18564.1|Name=mRNA_Ecto-sp6_S_contig95.18564.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7575bp|location=Sequence derived from alignment at Ecto-sp6_S_contig95:82255..89829- (Ectocarpus species6 EcLAC_371)
ATGCGCCGAAGTTGCTCAGAATGTGGACGGAAAAAGAAGAGCTGTGATGG
CGACCTCGTCGGCAAGACTCAGTCGGTGAGGCAAGGCTCAGTCGATCGAT
GTACGAGGGCGGGGTAATTACTGACGTACGAGGGCGGCGTAAAAAATATT
TCTTGCAGTCGCGGAGTCGACTCAGTTCCGTGCAATAAATAGTCTTACAG
TATATCTGCGATGCTGATGGTGCGCCAATGCCGATACACAGCAGCGTGAA
GAATCGTTTGCGGTGCAGCTACGTGCACCGAGCGATTGGACCAGCGATTG
GACCAATATGTAATACAGGTGGCGCCCGCAGTTTAGAAACGTCAAATCCG
GGTCGAGCCTCGATCCCTCTTATTTTGGGTCGAAGAGTTAGCCGAAGTCG
TCCATTCTTATTCCTTCGCAATTCCTTATTCCTACCTTTTGATCTCTGGG
GAAAATCCACTTCTTCCTCAAGCCTTCCCGAAAGGTGGTGGAGAGTGCCG
TCAACCCGCACAGGACAGCATGTGGTTGTCCGCGATGTGTGGCAGTAGTA
CTGTATGCAGTAGTAGAGTTATTCAAAACTCGAAAGACTGCATGAAACCA
GTGAAAGAGCCCGAAAAGTAGATGAATCGAGTTTTATATCGGAGGGGACT
TTAGGACAAAAATGCATGGATCGTGAGCAAAAATATGTTTGGGGCTCCAG
AGCCCCAAGTATATATTTGTGTTCCGAGACGAACAGACTACTAGCTGCTC
TCTCTATCTCCCTCCCTCCTTGTCCCTCCCTCTGTTCTCTCCTCGCTTTT
GCAGCAAACGTCACCGCCGTCACAACAGCAAAGACACCGCAAACAGTCAT
AACAACGCCGCCGCCACCGCCAGCCCCCAACCAAGCTTTCAGGCACTGCC
CGGACGATTTTTTGTTGTGCTGCATGCGTATCAACGTGTACGTGAGGTTG
CTGCATGCTGCTGCACCCTCTCTTTTCCCTCTGCCCTCCTCTCTCGTCGT
CCTCCTTTTTCTTTCTCGCTTTCTTTGGTGCCGCGATCGCACGCAAGCAC
AGACGAACTAACGAACAGGTACACAGTTCCACAAGGCTCGCCGCGTAGCT
TATGGGCTGCCCCGTTATTTTTGAGGGGAGGGCGGCCCTTCCTAGTCGGC
ATTGCGGGGAGGCTGGAGGTTGTCGTTGCCCCTGATGCACAGGGTGTGCG
TATATGCCTGTCTGCCTGTCTTTTCTTACCTCTCTCTCGTTTTGTCCTTG
GCACAAAAAAAAAAGAGAAAAAGGACCAACGGTTTTTTATCATCAACGTG
CCCGAGTGCCAACATACGGAGTACCAGCTGGCGTGGGTTGGGGGCGCTCT
TGGCAGAGACGAACGCGCCTTGTCCGCTATTCGTTCACTGCGTAAGGGTG
TGCATATTCGTATAACCTTGAAAAAAGGCACTCTTTTTTCGGATGCTGCT
TGTTTCCGGTTGATCAAATTTGGCTGCACCACAACGGCAGCCCACTTGCC
CAACACCAGCTGTCCGAGGATGTATTGGCGCAGGCTAACCGTCTTGTATT
TTTGTGCTGTGACGATGTATTCTCGGGTTTGGTATCACGAGAGTTTTCCA
CCAAAAATGTACAAAGCAGCGAAAGGCCCAAAAAAGTCCCGCCGGTCCAT
GAATCGAGTTTTAAATAACTCTAATAGTAGTACACCACAGTGAGCAGCAG
GGGCGCGGGGGGCGCCGCGAAACCAACCACTCTCCCCCGTACAAAACGAT
GCACTGTTCAGCTATGTTACGTAGGGGGTTGGGAGCACCGGAGCAGCAGT
TGGACGTTTCTTGCCTTTGACGCGATCCCCCAGCTACCTCTTGTTACTCA
TGTCTTGGGTGTGTCGCACCATCATGTTTCTTTTTGGGGAGTTTCTTGGT
TTGTGGCCGAGATTGAGCTGTTTTTCTTAGCCTATTTTTCTGAACAGATT
TTTTCTTGCCTGCGGGCGCTATCTGTAGTGCTGCGGCCCCGTTCAACATG
TGGCACTCTGCGGTACGATGATGCACACACCCACACCCACGACCCACGAA
AAAAAAAATGATATCAAGTCTTCCCGCTCTGCGGACGACGCAAAACACGC
ACAAATAGTATGCCTTCATCTGGAAGAGGAACGCATGCGGCATATGCCTG
GCGAGACATATTATCACACCGCCGAGGAGCACGAGCAGCAACAACGTAGA
CATGATTGCGACAGACAGATGCATGCGTGATAGACAGATGGCAAGTATTG
TGTGAGATTCACAATTTACCCGCCACATTCGTCCCAAGTCTCCGAATTTC
CCGCCACCGTGCAAATCGATGGTTGAGTGCGGAGCTTCATCAGGTCGTTT
GAATACTATACGGTGCTCAAGTCCTGAATCTCGATCTGCCTTCGCACAGT
CAATACTGTAGTTCTGTTATTCCAACGACTCATGGCGTTGCTGGACTCAA
AGCAGCTACAGTCGGATTCGTATTGACGAGTGCAGTGCACGCCCTTCATC
TGGGAAGGTAGGACGACCAAAATCACTTGTTACGCTGCGTAAACCTGGCT
CCGAGGGTATCCGTTTGACGTTCCTGGGCGTTGAGACGAAGAAGAGATTT
TCGATGCGATCGCGCGAGGGGCGGAGTTGAGCGAGGTCCGGGAAGGGCAT
CCGCTTCCGATGAACCCGATCATGCGTATTCTGATTTGCATTTGCTGTGG
GAACACGATCTTGCATATCTATTTTGCTGAAGACCGTGTTTCATGGAACC
GGCTGTCAGCGCAACCGATTTTCCAAATCCTTTAGTCTACTGTACGAGGT
CTCCTTTCGGGTCAAGCTTCCCGCGGGTGACGCAAGACCACATGCGCATT
GCCCGAGGGTCATGTGTCTTTTTTTTCATGGACAGTGTAAAGGGATAAAT
ATTTCACAAAGCCGTTTTTGATGGGTTTCAGAATTGGTTCGCCAGGCTTT
GTCTGTGCGGAACGCCCCCCCGGGGAATAGAGCCGTTTTCCGGCACTTTG
ACCATCAACCACACTTGCCACGGAGGCCTACCAAGCTCCGGGCACCAGCG
TTAATGTACCGACGAGCCTCCTGCCTGCCACAAAGAAGGAATGCCGAGGA
AAGACTCGTTGCCGCGAGAGAAAGACATGCGTGAGCATGAAAAGTGACCA
AATCTAGCATGTACATGTGAAGTTCAAATCCAAACTGGTGGAGATTGATT
TTCAATTTTGCGGTGCCAGAGTGGCTTGCTCATGCGGTGGGCCTCCGTGC
TTCACTTAGGCTTGGTGGTAGGTGGCGAAATACCTACGAAACACTGGCTA
ACAAACAACCCGGGTCAGCAGACGCTGACATCGCGAAGTGAATTCAGCAG
GGATACCCTCCACGAAGATGACGGCCGGCTTGCGCTTTGTTATCCGCCCT
TTCTGGACCCCTGCCTTACGACCTTCCGTTCTCTGTTCACACTGTAGATT
CGGACGCCTGACGTACGCACACGTTCCCATGGGGCCCAAGGTGCTCTATA
AAAAGATAAATATTCACGCGGACAGTCCCTCTTGTCGGTCATTTTTGTAC
TCTGTGGGCATTGGCATGGCAGTGCTTGCCTACCTGTACGGCGTTATGCA
AGACTGGGTGACGCGTTTACCCTGCCCCTGCCGTGTATGTGAGTGCGCAT
CGCTGCTGACTCGGGATCAAATCAGTTCTGGCTTCTGTGTATCACAGCAA
CTGATGCGTTATATACATTTCAAGTGAGTCGGTCCGGCGGCCTGCTTGCA
TCATTCCTGGGAGTGAAAATGGTCTGTTCCAGCTAATTCGCATTTTTTGT
TTCTCTGACGTGCTTCCGGTGAATTTCATCCACCGTACAGCAACAGCATC
AAGAGTATAAGGCGGTCTTGGAGTCACGTGTTCGGGGTTCACCCGAGCAC
AGGTCGGGCCTACCGACATTCTTCTATGGATAGTGTGAGCTGCATTTCGA
GCCTCTCGAAGGAGCGGTAGATCGGTGAGTCGAATGGCGTAATGCAACAC
GAGTATACAGATGCTTTTGTTCTTAGCACCAGCTGTCATCACTGATACAA
TCCAGTGTATGTATTGGCATAAACCATATCAAAACACACCCGGTTTCCAC
GCGGTATACCTCCACTCACTGAAAATACTACAGCGCATCCCTTTCGACTG
TGGTTCGACTTTGGCTATATCTCGAACGGGTAGACTTTCTGTGAGATTGT
GGAAACTTTCTAAAGAAGAGTCACGCACCAGGGACGCGGGGCCCCGCAGT
CTCAAGCCATTGTTGATCAACATATCATTCACGAAAAAGCACAGGGCTGC
TGAGAACGGGAGCTCACCCGACAAATCCAACCGCAAGAAAAGCACGACTG
GTGCACGAGACTTGAAAGCTAGCACGTCCGCCAGGACGGGTTGATACAAA
ACATATCGCCGAATGAATTTGAACGTCACCCCTTTGGTTTGGCTGATACG
CATGTCGGCAAAAGAATCAAAGACGGAATCCGTTCAGGTGCCGGTAAGTT
TCGCGGTCACCATCGGCTGGTGTACAGTCTTCTGTCCAAAAAGGCTGTAT
TCTGTCCAAAAGGACTGTGCTAGGGTGATTCGCGGTGGCGAGCGGCTGTT
TTCGTCGGTTCGGAAGGGCGATGTTATGGCTAGTGAAGGTGCCGTTGTTG
AGTCCGTCGGAATGGGTATATCGCCGGTGAGATGATGGTGATGCAAATTT
GATCAAACGACAATGTTTACTGTACATGTACCTTCGGACGGAGTATTAAG
CAATATTTGGGAAGGACGAGGTATTGAAGGGCGTGTCTACGGCAATACGG
TCGAGGCCAAAGCCTTGACTTTGTTCGGCGTCATTGTTGTGGCATCGTTC
ATATCGCAAAAGTCGTCGTGTTGGTACTTGTCGCACGTTCCTATTCTCCC
TACGTCGACCCTGACCTCCGCCAACACTGACCACAAGTTGAATCCTACCT
CACTCCAAGACAGAACCGACGAAGTTGAAGCCCTCCGAGACAGGCGAACT
GCACAATACCTTCTTCTTAAGCAACCGTCAACACCCAGCACAACTGCAAG
TTCAGCGTACCCACACTCGGATAGAATGAAGGAAGATACGTCGGTTGCTT
GTACGGCGTTCTTCCTAGACTCGTACGCGGCCAACATGTGGCACATAGCC
GAGGTAGGTGGACAGGACGATGCGCGAAAGGTCGACGCTGAATTATGGGC
GGAAGTGGTCGAAGGAGAGGGTTGAGCGCGAAGCCCTGTTTAATTGAAGA
AGAAAACGGGGAAAAGGTGGGGGGGCTGGAAGCGGCAAGCGATGAACGAA
AAGTATGAAGCAATAAAACTGGAAGGAACCAAAGAAACACGTATGGAAAA
ACGAAGGGTGTTGGTACAAGAGAAAGTTGGAGCGAGCAGTACTGTATGCA
AGAAAATGAAGGGTGGTGCCTACATCCATCCGTGCATCCGCAAGCAAGTC
CGGAAACGTGGTGCACAAGGTGTGGTACATTCACATATATATTCACATCT
ACGAACTGGCATAGAGTACGCATAGCCATGCACACACGCATACATACAGA
CGGAGATCTACGCATACACACAGCATGGTGGTCTTTGCCAAAAGGCGCTC
GGCGGCTAATCGTAGCTATCGCCACCGTCTCGCCGACGAAGCTTCTCCAG
GAGAAATTTCGACGATGAAACAGCTTTTCCACAAAGATTACCCTACCAAG
AGAATTCGGAGACAGTCCACCTTCAGAGCTGGCTCGTTTTCTCTCGGTAC
GAACTCGTGACTCCTTCGAAGTGATCGACTAAAGTCCGCGACGGCCCAAC
AGGTTAAGATTTCAGTATAGTGTAGTGAAGAGGGTAGTGATGGCATGAGA
GTGGTAGTATTTTTGGGAGTGACGGAGGTTGAAGGAAAGGGAAAAGGGAG
AAAGGAGGGTGGAGGCGATTAGAATACTGTAGAGAAGACCTGCCAAGGGT
AGTGAGGATATTGGCGAGAAGAATGACGGTGGTAGAAAATGCGGGGAGGA
CAATACAGACAACAAGCCGAAACGAACGAGCGTCCAAAGCAGTAGCAGCC
ACGGTGAACATGTACAGTTTTCTTATGTTGCTACGGAATCTGTCATAAAT
CAGGAGAGTAGCGTAGACTCCCCCATGACACTCCCTCATGTTCCCAGATC
GTGGCCGATAGAAGCACTTTGTAGTTTTAGCCGGAAATATTGACGTACAA
TATTTAGTCAACGAGTTTGCGCGGTCGAAGCTAAGAAAAACACAAACGGA
AGAATGCAAAAGTTCGCACGTGTGCTGCACCCAGAAAAGAGGCGACAGCA
CGCCAGCAAGCGTTCAGCACCACAGCCACACAAGCAAACACAAACACCGC
CCCGAACGAGAACCCATAACACGACCACCTCGGTATACGGAGGAAGCCAG
AGGAAGTCAGCATTGATAAGACAATGAGGCCGCACCGATAAAGCGACAAG
AATAGTCACGGCGCTGTCCTTGGGGAGACCACGCACATTGTCACACTTGC
GACGCGAGGACAGGGCATCAACTTCTCCTCCTCTGATGCTTTTATATAGA
GATGCCAGTACTGTGTCTACGAACGCACAACCTTCAAACGCACAAAATGA
ACCAAAACGCATTGCCATCCGTGAGAAACTTCTCCCCTCCCTTCCAGCAA
CAAGTATATTTTCGGAAGAGAACTTTCTTTGCCTGCTCAAAAGCCGCACT
CAGAGGGCGAAACACACCAAGATGGCATCTGCCCACTGCAGATGGCGGAA
GCTCGTGAATCTCCGGGACGGCTGATGATTCTCGATTCCCTCCAAGTCAT
GCCTCGGGTATCGCCTGACGTGCGCCGTAGCTCGAGACCGAGCTTTGACA
CCCGATCGGGCAAGGCGTAGGCTATGCGAATGGGAACGACACGAAAAAAC
AAAACACTTTTGGTCTGAAGAGCCCCAAGCTAGAGCTTGGATATTGGTCC
AGTGGTTCCGTGTGCGTCAAGCAAGAGGGGTGGTCCCAACTGGGCTGGTG
TACAGCCCGAACCATCAGTGACCTGCTGGCTTCGTGGGGTCCAAGCCCCT
GGGCGTGTTTCTGAACTTTCTGGGGGCCCAACTCATTTTTGCCTTCGTTT
GTTGCCACCACAAACCGCCAGCCAGAGAAAAGCAAAGAATAAATTCGAGC
GATAATCGATATGGCGGGCCTCGTCTTCCTGAAACACACGAACACGGCGA
AAAAACAACTCCTAGACAAGTTTGGTCGGCCTTGTCTGTCTGAAACGTTC
CTTGTTTATTTTTCGGGAAGCCGCGACTACGTACTACGGTCACACGAGCA
CGAGACACAGCAAAACAATTGACTGAAGAATGAAGATGTCCAGACCTCAA
CGAAGCCCTTAAAATTATTGTGCAGATGATGACATGACCAAAGAACAAAG
TCCGAAGAAAACCTACGCTGACAGAATATGTCAAAAATGCTAAACGCAAA
AGAAATCGCATGACAATACGCCTCGGGCAGTTCCCCCCGATGGGCGGACA
GGGCCTGAAGTATGTTGGTCGTTTGGCAACAGGCTTCCAACGGATGGGCT
GCAGCGGCACCGGCGGCGAGAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig95:82255..89829-

>mRNA_Ecto-sp6_S_contig95.18564.1 ID=mRNA_Ecto-sp6_S_contig95.18564.1|Name=mRNA_Ecto-sp6_S_contig95.18564.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp6_S_contig95:82255..89829- (Ectocarpus species6 EcLAC_371)
ATGCGCCGAAGTTGCTCAGAATGTGGACGGAAAAAGAAGAGCTGTGATGG
CGACCTCGTCGGCAAGACTCAGTCGCAACAGCATCAAGAGTATAAGGCGG
TCTTGGAGTCACGTGTTCGGGGTTCACCCGAGCACAGGTCGGGCCTACCG
ACATTCTTCTATGGATAG
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