mRNA_Ecto-sp6_S_contig95.18563.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig95.18563.1
Unique NamemRNA_Ecto-sp6_S_contig95.18563.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig95.18563.1 vs. uniprot
Match: A0A6H5JYQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ0_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 7.930e-24
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    4 LLQPVVTQKSSSL-SHPAVRCLQFLMREEFSTLFPLCTHDLALSTRPGAEAREKLALQEKLPYARILT 204
            LLQPVVTQKS SL S PAV CL+FLMRE+FST FPLCTH+LALSTRPGAEAREKL LQEKL YA + T
Sbjct:  124 LLQPVVTQKSPSLPSPPAVLCLRFLMREQFSTFFPLCTHELALSTRPGAEAREKLTLQEKLAYAGVRT 191
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BLAST of mRNA_Ecto-sp6_S_contig95.18563.1 vs. uniprot
Match: A0A6H5JLU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU5_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.740e-17
Identity = 48/70 (68.57%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    4 LLQPVVTQKSS---SLSHPAVRCLQFLMREEFSTLFPLCTHDLALSTRPGAEAREKLALQEKLPYARILT 204
            LLQPVVTQKS    SL    V  + F ++E FSTLFPLCTH+LALSTRPGAEAREKL +QEKL YA I T
Sbjct:   15 LLQPVVTQKSPPLPSLLRYFVVVVVFTLKE-FSTLFPLCTHELALSTRPGAEAREKLNVQEKLAYAGIRT 83
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BLAST of mRNA_Ecto-sp6_S_contig95.18563.1 vs. uniprot
Match: A0A6H5KKL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 6.430e-17
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = -1 
Query:   15 SFSLASAPGLVDSARSCVHRGKRVLNSSRIKN*RQRTAGWE-REELFCVTT 164
            SFSLASAPGLVDSA SCVHRGKRVLNSSR+KN RQ TAG E RE LFCVTT
Sbjct:    2 SFSLASAPGLVDSASSCVHRGKRVLNSSRLKNRRQGTAGGEGREGLFCVTT 52
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BLAST of mRNA_Ecto-sp6_S_contig95.18563.1 vs. uniprot
Match: A0A6H5L041_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L041_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.270e-16
Identity = 46/62 (74.19%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   22 TQKSSSL-SHPAVRCLQFLMREEFSTLFPLCTHDLALSTRPGAEAREKLALQEKLPYARILT 204
            T+ S SL S PA+ CL+FL+R EFSTLF LCTH LALSTRPGAEAREKL LQEKL YA I T
Sbjct:  821 TRVSPSLPSPPAILCLRFLLRGEFSTLFTLCTHGLALSTRPGAEAREKLTLQEKLAYAGIRT 882
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BLAST of mRNA_Ecto-sp6_S_contig95.18563.1 vs. uniprot
Match: A0A6H5JSR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR5_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 6.530e-16
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   76 MREEFSTLFPLCTHDLALSTRPGAEAREKLALQEKLPYARILTL*KDSRI 225
            MREEFSTLFPLCTH+LALSTRPGAEAR KL LQEKL YA I T  +D  +
Sbjct:    1 MREEFSTLFPLCTHELALSTRPGAEARGKLTLQEKLAYAGIRTPLEDFEV 50
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BLAST of mRNA_Ecto-sp6_S_contig95.18563.1 vs. uniprot
Match: A0A6H5L3Y5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y5_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 7.590e-16
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   76 MREEFSTLFPLCTHDLALSTRPGAEAREKLALQEKLPYARILT 204
            MREEFSTLFPLCTH+LALSTRPG EAREKL LQEKL YA I T
Sbjct:    1 MREEFSTLFPLCTHELALSTRPGGEAREKLTLQEKLAYAGIRT 43
[Close]
BLAST of mRNA_Ecto-sp6_S_contig95.18563.1 vs. uniprot
Match: A0A6H5K2Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Z5_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 9.690e-16
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   76 MREEFSTLFPLCTHDLALSTRPGAEAREKLALQEKLPYARILT 204
            MREEFSTLFPLCTH+LALSTRPGAEAREKL LQE L YA I T
Sbjct:    1 MREEFSTLFPLCTHELALSTRPGAEAREKLTLQETLAYAGIRT 43
[Close]
BLAST of mRNA_Ecto-sp6_S_contig95.18563.1 vs. uniprot
Match: A0A6H5JMV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV9_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.060e-15
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   76 MREEFSTLFPLCTHDLALSTRPGAEAREKLALQEKLPYARILT 204
            MREEFSTLFPLCTH+LALSTRPG EAREKL LQEKL YA I T
Sbjct:    1 MREEFSTLFPLCTHELALSTRPGTEAREKLTLQEKLAYAGIRT 43
[Close]
BLAST of mRNA_Ecto-sp6_S_contig95.18563.1 vs. uniprot
Match: A0A6H5JNE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE5_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 8.220e-15
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   76 MREEFSTLFPLCTHDLALSTRPGAEAREKLALQEKLPYARILT 204
            MREEF+TLFPLCTH+LALSTRPGAEAREKL L EKL YA + T
Sbjct:    1 MREEFTTLFPLCTHELALSTRPGAEAREKLTLLEKLAYAGVRT 43
[Close]
BLAST of mRNA_Ecto-sp6_S_contig95.18563.1 vs. uniprot
Match: A0A6H5KD99_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD99_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.860e-14
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   76 MREEFSTLFPLCTHDLALSTRPGAEAREKLALQEKLPYARILT 204
            MREEFSTLFPLCTH+LALSTRPGAEAREKL LQE L YA I T
Sbjct:    1 MREEFSTLFPLCTHELALSTRPGAEAREKLTLQETLAYAGIRT 43
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig95.18563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYQ0_9PHAE7.930e-2480.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLU5_9PHAE2.740e-1768.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKL9_9PHAE6.430e-1786.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L041_9PHAE1.270e-1674.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSR5_9PHAE6.530e-1676.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3Y5_9PHAE7.590e-1686.05Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K2Z5_9PHAE9.690e-1686.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMV9_9PHAE2.060e-1586.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNE5_9PHAE8.220e-1581.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD99_9PHAE3.860e-1486.05Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig95contigEcto-sp6_S_contig95:78861..79261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size401
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size135
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350581.331402-UTR-Ecto-sp6_S_contig95:78860..789351682350581.331402-UTR-Ecto-sp6_S_contig95:78860..78935Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig95 78861..78935 +
1682350581.3585231-UTR-Ecto-sp6_S_contig95:79070..792611682350581.3585231-UTR-Ecto-sp6_S_contig95:79070..79261Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig95 79071..79261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350581.3455374-CDS-Ecto-sp6_S_contig95:78935..790701682350581.3455374-CDS-Ecto-sp6_S_contig95:78935..79070Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 78936..79070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig95.18563.1prot_Ecto-sp6_S_contig95.18563.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig95 78936..79070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig95.18563.1

>prot_Ecto-sp6_S_contig95.18563.1 ID=prot_Ecto-sp6_S_contig95.18563.1|Name=mRNA_Ecto-sp6_S_contig95.18563.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=45bp
MREEFSTLFPLCTHDLALSTRPGAEAREKLALQEKLPYARILTL*
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mRNA from alignment at Ecto-sp6_S_contig95:78861..79261+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig95.18563.1 ID=mRNA_Ecto-sp6_S_contig95.18563.1|Name=mRNA_Ecto-sp6_S_contig95.18563.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=401bp|location=Sequence derived from alignment at Ecto-sp6_S_contig95:78861..79261+ (Ectocarpus species6 EcLAC_371)
GTCCTACTCCAGCCCGTGGTCACACAGAAGAGCTCCTCTCTCTCCCATCC
TGCGGTACGTTGCCTTCAATTTTTAATGCGAGAAGAGTTCAGCACTCTCT
TCCCTCTGTGTACACACGATCTAGCGCTATCCACTAGGCCAGGAGCGGAA
GCGAGAGAAAAACTCGCTTTGCAAGAAAAGCTCCCTTACGCCAGGATTCT
AACCCTCTAGAAGGATTCGAGGATACCAACTAGACCACCGGGGCGACCGG
CAATCGGGAGACCGTGAAATAAGAACAGTTGCATATTGTGGGGTCCGTCT
TTTTGTCCCGGCTTAGCCCGACTCTCTCTCTCTCCCTCTCTCCGGATATA
TGTAGTCTATGCTCCCGAGAAGTACATAGCAAAGGACCTTGAGGGGCGTC
G
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig95:78861..79261+

>mRNA_Ecto-sp6_S_contig95.18563.1 ID=mRNA_Ecto-sp6_S_contig95.18563.1|Name=mRNA_Ecto-sp6_S_contig95.18563.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp6_S_contig95:78861..79261+ (Ectocarpus species6 EcLAC_371)
ATGCGAGAAGAGTTCAGCACTCTCTTCCCTCTGTGTACACACGATCTAGC
GCTATCCACTAGGCCAGGAGCGGAAGCGAGAGAAAAACTCGCTTTGCAAG
AAAAGCTCCCTTACGCCAGGATTCTAACCCTCTAG
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