mRNA_Ecto-sp6_S_contig95.18562.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig95.18562.1
Unique NamemRNA_Ecto-sp6_S_contig95.18562.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig95.18562.1 vs. uniprot
Match: D8LU15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU15_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 2.180e-97
Identity = 130/138 (94.20%), Postives = 131/138 (94.93%), Query Frame = 1 
Query:    1 MLPGGHTGPNTAHQHISNVSIPCSEVRFKGFIAQRFRDGIDSHTCGIAGTSPASDFTCRCPQHESAISVKLTTSANPWSAFGRIGPVDQRCGQTTKPWHQGTKGGLWHHTPSFILEPPIAQREDSSP*TTASGWSHQD 414
            MLPGGHTGPNT HQHISNVSIPCSEVRFKGFIAQRFRDGIDSHTCGIAGTSPASDFTCRCPQHESAISVKLTTSANPWSAFGRIGPVDQRCGQTTKPWHQGT+GGLWHHT S I EPPIAQREDSSP T AS WSHQD
Sbjct:    1 MLPGGHTGPNTTHQHISNVSIPCSEVRFKGFIAQRFRDGIDSHTCGIAGTSPASDFTCRCPQHESAISVKLTTSANPWSAFGRIGPVDQRCGQTTKPWHQGTRGGLWHHTLSCIPEPPIAQREDSSPWTAASAWSHQD 138
[Close]
BLAST of mRNA_Ecto-sp6_S_contig95.18562.1 vs. uniprot
Match: D8LU10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU10_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 5.540e-6
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = -2 
Query:  120 GFAEVVSFTEIADSCCGQRHVKSLAGEVPAMPQVCES 230
            GFAEVV FTE++DSCCGQR +   +GE  AMPQ+ E+
Sbjct:  168 GFAEVVKFTEVSDSCCGQRQINWSSGEEQAMPQLNEA 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig95.18562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU15_ECTSI2.180e-9794.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU10_ECTSI5.540e-662.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig95contigEcto-sp6_S_contig95:67780..68193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size414
Hectar predicted targeting categoryother localisation
Exons1
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350581.2920606-UTR-Ecto-sp6_S_contig95:67779..678091682350581.2920606-UTR-Ecto-sp6_S_contig95:67779..67809Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig95 67780..67809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350581.302508-CDS-Ecto-sp6_S_contig95:67809..681931682350581.302508-CDS-Ecto-sp6_S_contig95:67809..68193Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 67810..68193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig95.18562.1prot_Ecto-sp6_S_contig95.18562.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig95 67810..68193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig95.18562.1

>prot_Ecto-sp6_S_contig95.18562.1 ID=prot_Ecto-sp6_S_contig95.18562.1|Name=mRNA_Ecto-sp6_S_contig95.18562.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=128bp
MLPGGHTGPNTAHQHISNVSIPCSEVRFKGFIAQRFRDGIDSHTCGIAGT
SPASDFTCRCPQHESAISVKLTTSANPWSAFGRIGPVDQRCGQTTKPWHQ
GTKGGLWHHTPSFILEPPIAQREDSSP*
back to top

mRNA from alignment at Ecto-sp6_S_contig95:67780..68193-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig95.18562.1 ID=mRNA_Ecto-sp6_S_contig95.18562.1|Name=mRNA_Ecto-sp6_S_contig95.18562.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=414bp|location=Sequence derived from alignment at Ecto-sp6_S_contig95:67780..68193- (Ectocarpus species6 EcLAC_371)
ATGCTCCCTGGTGGACACACTGGTCCCAACACAGCACACCAGCACATCAG
CAACGTATCGATTCCATGCAGCGAGGTCAGGTTCAAAGGATTCATTGCCC
AACGATTCCGCGATGGAATCGACTCACACACCTGCGGCATTGCTGGCACT
TCACCAGCAAGCGACTTCACATGCCGCTGTCCGCAGCACGAGTCGGCGAT
CTCGGTAAAGCTAACAACCTCGGCGAACCCCTGGTCAGCGTTCGGCCGCA
TAGGACCCGTAGATCAGCGATGTGGACAGACAACCAAGCCATGGCATCAG
GGGACGAAAGGGGGACTTTGGCATCATACTCCATCGTTTATTCTAGAACC
GCCAATAGCCCAAAGGGAGGACTCTTCGCCTTGAACCACAGCAAGCGGTT
GGAGTCATCAAGAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig95:67780..68193-

>mRNA_Ecto-sp6_S_contig95.18562.1 ID=mRNA_Ecto-sp6_S_contig95.18562.1|Name=mRNA_Ecto-sp6_S_contig95.18562.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp6_S_contig95:67780..68193- (Ectocarpus species6 EcLAC_371)
ATGCTCCCTGGTGGACACACTGGTCCCAACACAGCACACCAGCACATCAG
CAACGTATCGATTCCATGCAGCGAGGTCAGGTTCAAAGGATTCATTGCCC
AACGATTCCGCGATGGAATCGACTCACACACCTGCGGCATTGCTGGCACT
TCACCAGCAAGCGACTTCACATGCCGCTGTCCGCAGCACGAGTCGGCGAT
CTCGGTAAAGCTAACAACCTCGGCGAACCCCTGGTCAGCGTTCGGCCGCA
TAGGACCCGTAGATCAGCGATGTGGACAGACAACCAAGCCATGGCATCAG
GGGACGAAAGGGGGACTTTGGCATCATACTCCATCGTTTATTCTAGAACC
GCCAATAGCCCAAAGGGAGGACTCTTCGCCTTGA
back to top