mRNA_Ecto-sp6_S_contig94.18547.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig94.18547.1
Unique NamemRNA_Ecto-sp6_S_contig94.18547.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig94contigEcto-sp6_S_contig94:576225..578545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size517
Hectar predicted targeting categoryother localisation
Exons5
Cds size285
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig94.18547.1prot_Ecto-sp6_S_contig94.18547.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig94 577178..578523 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350573.5111217-UTR-Ecto-sp6_S_contig94:576224..5763511682350573.5111217-UTR-Ecto-sp6_S_contig94:576224..576351Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 576225..576351 +
1682350573.5208595-UTR-Ecto-sp6_S_contig94:577094..5771771682350573.5208595-UTR-Ecto-sp6_S_contig94:577094..577177Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 577095..577177 +
1682350573.565839-UTR-Ecto-sp6_S_contig94:578523..5785451682350573.565839-UTR-Ecto-sp6_S_contig94:578523..578545Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 578524..578545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350573.5294552-CDS-Ecto-sp6_S_contig94:577177..5772201682350573.5294552-CDS-Ecto-sp6_S_contig94:577177..577220Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 577178..577220 +
1682350573.5378811-CDS-Ecto-sp6_S_contig94:577396..5775191682350573.5378811-CDS-Ecto-sp6_S_contig94:577396..577519Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 577397..577519 +
1682350573.5468628-CDS-Ecto-sp6_S_contig94:577790..5779041682350573.5468628-CDS-Ecto-sp6_S_contig94:577790..577904Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 577791..577904 +
1682350573.5564404-CDS-Ecto-sp6_S_contig94:578518..5785231682350573.5564404-CDS-Ecto-sp6_S_contig94:578518..578523Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 578519..578523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig94.18547.1

>prot_Ecto-sp6_S_contig94.18547.1 ID=prot_Ecto-sp6_S_contig94.18547.1|Name=mRNA_Ecto-sp6_S_contig94.18547.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=95bp
MSRGDSQGERSFIYDPPGGDMIQDNGETAAQLLRAQNSAARKPTVAEKAA
EDARLANQRGLWSTGGLPRGGVAQYPTSHATQGASDTAAVGHEG*
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mRNA from alignment at Ecto-sp6_S_contig94:576225..578545+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig94.18547.1 ID=mRNA_Ecto-sp6_S_contig94.18547.1|Name=mRNA_Ecto-sp6_S_contig94.18547.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2321bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:576225..578545+ (Ectocarpus species6 EcLAC_371)
GGCTCAATCACCCCCGGACTTCCCGGGGTGAGCCACACTCTTCTTGCGCG
CCCCCATGTAGAGGGCGACATTAGCGAGGGCTTCGGTCAGCAGCCTCTTG
TCGTGCAGCATGGGGTAATGGCGCCCGGTGAGTCTGCTCGGTCATCGGGC
GGTGAACTGTCATTTCGGCGAACTTTGTGATTCCATGTAGACTTCCGCGG
TCTTCTACCTACGGTGCGGTCGCTTGATGGACGGAGTTATTGTTTCGTTA
TTAACTTCCCTGAAAATCCGTTGACAGGTTAGTCGTGCAGCTCAATACGC
CGTATGCAACCGAATACGGTAGTTGGACGGGATCTTTTCTCGCTTTCTGC
TGTGGTAATCAGTGAACGATGTGATCTAGAAGTGATACATGCATAGGGGG
GAATGGTTCCACACGTACGTGTACAGCATCAAATGGATGTTCTTCAGACA
TGTCCTCGTCTTTATTTAGTTATTTATTTCTTTTGCTGCTGTCTTGTCAG
TGCGGGACGCCGATAACACTCGTCTGCTGCTTGTATCGCTTAGTTTATCT
GTGTTTGTAGTGGTTCCGTCTTTAAACTGATAATTTACGGACAACAGTCC
ACTACCGTGCGGTCGGGTCGCATTTCATGTGGTGAGTTTCGTCTCCTCCG
CTGTGAGGCATTCGTGGTCTTCTGCTCTCTCATGCCTCATTTTAAGGGGG
TGGCGCCATTATTCGACGGTGGGTAATTGGGACAGCTCTTCTACAGATGA
CGCATAGTACCACGGTAGAAATATAGCTGTGGCATGATGCATACGAGCAG
GAAGTCTACGCTTGGACGAGTAACGCCCCCTTTTCGGTGCTGTCGTCCCG
ACCCCCCGCTCAAGGGACAGGCTCCGCCACTCCCAGTTAACTATCGGCAC
GCCTGCAATCCAACCCCTACCGGACCCCGGCGCCCGCCCAGTTGCAGGGC
AACATGAGCCGGGGCGATAGCCAAGGAGAACGATCTTTCATCTATGGTAA
GTATGTTGTGTTAGTTTGCGACAAGTTTACATTCCAGGCTGTATGCAGTA
GTCGTTTTTTCCGCGTTGATGGCGTAAGTATTAGGACCATCCCATTCGCG
TGTTCCACCTGCGGAGATTAAAACTGGCGACGCGGCGGTTTATTTCCGTC
TTCGTGTCGGCTGTATTTTAAGATCCTCCTGGAGGTGACATGATCCAGGA
CAACGGTGAGACGGCGGCCCAGCTTCTGCGTGCTCAGAACTCGGCGGCGA
GGAAACCAACCGTCGCTGAGAAGGCAGCGGAAGACGCCCGTCTTGGTGAG
TGGTTGTGGTTTCCCTCCTAGACCTACATAATGAAGGTATTTTGTATGCA
TTCGTTATCTTCACGGCGATACGACAGCGTACAGAATACGGATCGCACGA
GCGTACGTGTCATTTAGGTGTCCAGGCTTCAGGGCAATATGAGAAAACAC
GAACTGGCTTATTCGATCGTTGCTCGAGCCCAGGGTTGTGCGCTTATGCA
TGCAGAATAGCAACATGCGAAACCTGACCCATCCGTTTCCACCACCCATT
ATTACCCTATGCACAGCCAATCAGCGCGGGCTTTGGTCTACGGGAGGGCT
TCCGCGAGGGGGGGTGGCCCAGTACCCGACAAGTCACGCGACCCAAGGCG
CGAGCGACACCGCAGCTGTGGGGCATGAAGGTGCGTCCCCAATTCCGTGT
CTGTTTTTGTTGTTTCCTTCTGCAACACGTTATGCGGTGTGTATCCGTCA
ACTAGAATTATCCGTACTGCTACAACTGGGGAGGACTGGATGGTCTGTCC
GCTGTGCTGAATCCTGACACGGGGGGTGTGCTCTGGTTGCGACTGAGGTG
ATTATACGACGTGATGTGTATGCTGCCGTAGGATACCATAACACCTGTAC
TTCCCACCCAACTAGGAGGCCCCGCCATGGGGGTGGGGAGGGTGGGGGTG
GGGAGACCCGCGTGTGTGCCCGAACATGTTTGTGATATGTACCCTTCTTG
CCTGTGTTTTATTATCTCGCATCATCCGCTCGGGATCTCTTGCGTGTTTC
GGTGCACTGCTCGCGCTTGCAAACTTAGTGTTTATTTGGTCAGGGTACCT
GAAGACAGGCACTACGACAGGCACTACTGTGTACTCGTTCGCACACGCAA
CAGGAGACAAACGCCGCCACGCACACGAGAGTCTCACAGATCCCTCCATC
GTTAGATCCACTTCTGACAACAAATAACCCAACCCACCGCCACACGCCTT
CCACATCCTGTCATACCCTCGGTGCTATATCCCACCGTACGCAGGGTGAG
AGCCTCCATGCGTACCTCCAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:576225..578545+

>mRNA_Ecto-sp6_S_contig94.18547.1 ID=mRNA_Ecto-sp6_S_contig94.18547.1|Name=mRNA_Ecto-sp6_S_contig94.18547.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:576225..578545+ (Ectocarpus species6 EcLAC_371)
ATGAGCCGGGGCGATAGCCAAGGAGAACGATCTTTCATCTATGATCCTCC
TGGAGGTGACATGATCCAGGACAACGGTGAGACGGCGGCCCAGCTTCTGC
GTGCTCAGAACTCGGCGGCGAGGAAACCAACCGTCGCTGAGAAGGCAGCG
GAAGACGCCCGTCTTGCCAATCAGCGCGGGCTTTGGTCTACGGGAGGGCT
TCCGCGAGGGGGGGTGGCCCAGTACCCGACAAGTCACGCGACCCAAGGCG
CGAGCGACACCGCAGCTGTGGGGCATGAAGGGTGA
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