mRNA_Ecto-sp6_S_contig94.18538.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig94.18538.1
Unique NamemRNA_Ecto-sp6_S_contig94.18538.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig94.18538.1 vs. uniprot
Match: D7G2W8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W8_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 4.210e-57
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:  121 MMGSQSRWGWSRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDLDQRDKGLRRLVAYLVFFLLFFGILILESDVTFQHSVETGITKFINQ 405
            MMGSQSRWGWSRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDLDQRDKGLRRLVAYLVFFLLFFGILILESDVTFQHSVETGITKFINQ
Sbjct:    1 MMGSQSRWGWSRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDLDQRDKGLRRLVAYLVFFLLFFGILILESDVTFQHSVETGITKFINQ 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2W8_ECTSI4.210e-57100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig94contigEcto-sp6_S_contig94:467134..470701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size777
Hectar predicted targeting categoryother localisation
Exons5
Cds size777
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350578.3340213-CDS-Ecto-sp6_S_contig94:467133..4672541682350578.3340213-CDS-Ecto-sp6_S_contig94:467133..467254Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 467134..467254 -
1682350578.3448784-CDS-Ecto-sp6_S_contig94:468273..4685241682350578.3448784-CDS-Ecto-sp6_S_contig94:468273..468524Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 468274..468524 -
1682350578.353224-CDS-Ecto-sp6_S_contig94:469064..4691761682350578.353224-CDS-Ecto-sp6_S_contig94:469064..469176Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 469065..469176 -
1682350578.3632236-CDS-Ecto-sp6_S_contig94:469500..4696411682350578.3632236-CDS-Ecto-sp6_S_contig94:469500..469641Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 469501..469641 -
1682350578.370983-CDS-Ecto-sp6_S_contig94:470549..4707011682350578.370983-CDS-Ecto-sp6_S_contig94:470549..470701Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 470550..470701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig94.18538.1prot_Ecto-sp6_S_contig94.18538.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig94 467134..470701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig94.18538.1

>prot_Ecto-sp6_S_contig94.18538.1 ID=prot_Ecto-sp6_S_contig94.18538.1|Name=mRNA_Ecto-sp6_S_contig94.18538.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=259bp
MWFTGRQPAADSRKSATATSLRSSRLLGHHVDSSRSVGGGMMGSQSRWGW
SRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDLDQRDKGLRRLV
AYLVFFLLFFGILILESDVTFQHSVETGITKFINQVTSGPDGNIRLEDVS
TREEFSAWALSLYMAMYDGTEVEDVCNACVALRAEDYNRNFFLEVSDSTW
GTDVPYNASSSGSGGGNDSFPFLVDNCALCYGSERASIVEGGAGSIGQEF
CDICIDLE*
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mRNA from alignment at Ecto-sp6_S_contig94:467134..470701-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig94.18538.1 ID=mRNA_Ecto-sp6_S_contig94.18538.1|Name=mRNA_Ecto-sp6_S_contig94.18538.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3568bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:467134..470701- (Ectocarpus species6 EcLAC_371)
ATGTGGTTCACGGGCAGACAGCCGGCGGCCGACTCGCGCAAGAGCGCTAC
TGCTACGTCGTTGCGAAGCAGTAGGCTACTCGGCCATCACGTCGACAGCA
GCAGGAGCGTTGGAGGGGGCATGATGGGAAGCCAATCTCGGTGGGGATGG
AGGTAGGTGCGTCGGCGGGCGGGGCGTAAGCTCTTGTATGTGTGATCATG
ACCATTGGAGGTTAGCGTTGGTGTGGGGCGACCTTGCGAGTCTGTCGAAA
GCATGGTTGTAGGGCAAGACGAACAGCCCATGAGCCGTCCTATGCATACA
CTATAGCAACACACGTCACAAGTGGTCACACTTTTGTTGCAGCCCGGTGT
GAACCCTAGAACCCGAGACTATATCAGAGGACCGAGTGCTGAGCACTTCT
GCGCCACTGCTAAGAGCCTGGTATGATCGTAGAACACTCCGCTTGGTGGA
TTCGCGCGATGCACTGCCCAAAGCTACCGCTGCATGGTATGTGACATACA
AGAAGTACATAATACATGTAGCAGACCCTTGACCACATGCGCTACCGTGT
AGCCTAGTTCGAGGGGTCGTGGACAACAAGCGCACACAGACGGACGGATA
GGGAAGCACAACCACCTCTCTGTGGGTACTTGGGGTGGCGCTGTAGCTCA
TGAACGAAGAACTGCTGTGTTCTACCGCGGCGGCTTGGAACGTCCCAAGG
CAGCAGTTCAGCAGTCCCACGACACCTCAGCGCACTGGCTTTCACCTGCT
CGCTCTCGGTTGTATCATCTGCGAGCCCCCCCCCCGTGGATGAAAGTTAG
TACAACTACAACTTCAATACCTACCCATTTACGGTCTCGCCTTCTGCACG
TCCACATTCTACTCTGGGCCGAATCCAGTTGTGACCACGCAAAAGCTTGT
TGGTTGCCATCACAATTACTTACTCGGAGTACTTTAGAACAAGAGGAGGC
CGGCCTATCGGCAAACAACAAAGATGCTCGTGAACCCCCCCTGTCCATTT
CCCGTGTGCGTGTGCCTGCTCCTCCTGACGGTTGACCGAAAAACATGGTG
GTTCTGCTAGCCGCTCAGAGACCGAGCGGCTGGTTCGGCTGCAAGCCGTC
GTGAGGGGGTGGCTGTTGCGGCGAAAGGTTAATTGGATCCCTGCGAGAGA
CCTGGAGGCTGTGCTGAAGGACCTGGACCAGAGGGACAAGGGCTTGAGAA
GGTACCGCTGTGGAACTCCCTCGTGTCTTGATGCTTGTGTGTGTCCATGC
CGTGGCCGGTTGCGTATCCTGTAATAGTCTACGGGACTGCTGTAGTTTGT
TTGAGCCCTCCAAGGGCAGGGTTTGGAGGGGACACGGGGAACGTGAGTCG
AGGTTTGCTCCCTCTCTCTGTCTATCTGTCTGTCTATCTCTCTCTTTCTC
TAGCTCAGTTTCTTCCTCAGTGCGTTCTCCTGCGTTCTAAATGCTGCGGT
CATGTTCTCCTTAACCTTGTACCTCATATGTACCTCTTGCGCCGCGTGTC
ATGATCGTCGTCATCATCACCACAGGCTGGTGGCCTACCTTGTCTTCTTT
CTGCTCTTCTTCGGGATCCTCATCCTAGAGTCCGACGTCACCTTCCAGCA
CTCCGTCGAGACCGGCATTACAAAATTCATCAACCAGGTTAGGCCCGCAA
GCAGCATCAGAAAGAAAAGGTCGGTCTTGTGTGCGTACTCTATGCCCCCC
CCGGTCCGAGAGGGGGAGAGTGTTCAAGACCACCTGACGTCGACGTTCAC
CGACCGGGTTGTCAAACGAATCAGTCGAGTCGCTCGTTGCTTGCAGTTCT
GGCACCAACATGTTTTCGTTTTATGTCGGCGTGCATCGGTGTCCCGCACG
TTGTCTGTAGTTCGGGCGCCGTGTGGTTCGGAGTGCTCTCGCCGAGTACT
TCTGCATCTGAACCTTGTTTTGTTGCTATTGTCGAGAGCTTGCCATGCTC
ATGAAGGAGGAGATATTTTTAAACGCCCGCCTCTAAACGAGGTATAGTCT
CCAAACTGGTCAACATCCACGCCCCCTACCCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTTCAACACATTAGGTAACGTCTGGGCCGGACGGTAA
CATACGACTAGAAGACGTTTCTACTCGAGAAGAGTTCTCCGCCTGGGCGC
TATCCCTGTACATGGCCATGTACGACGGGACGGAGGTTGAGGACGTCTGC
AACGCCTGTGTGGCCCTCAGGGCGGAGGATTACAACAGGAACTTTTTCCT
AGAAGTTTCCGATTCTACGTGGGGCACAGACGTGCCGTATAACGCTTCTT
CTTCTGGTAGTGGAGGCGGCAACGATAGGTGAGGCTATGGGAACCACGCT
GTTTCCACACGTCATCGAGGCTCGTGCGGAGTCCATCTTTTTTGTTAATC
CCGCTCGTAGCAATGGCTCGGCGTTTTTAGGGGGGGACCCGGATGACCGT
TTCACATGGAACGTGGCTCGTGTAGCACCAGTGTCGTATCGTATGCTAAC
TCTCGCAACAGTCTTATTGCGCTTTTTTCGTGGGTTAATTGGTTTGCTCC
GAGTTGTTCGATCTACAATGGGGTAGAGATGCTTTGAAGTCTTGGCGGTT
ACCCGACAAGGTACAATAGTCTCGATCGATAATCACCATGACGGCGTAGG
GATTTCGAGGCCAACAGCGGTTGTGAGTTGTTGACAAGTTACCGTGAACC
GTTCGTCATCTTTCTCCATGTGTCAACAGCTGGCGTCCGTCTGGTTTTGG
TTATCTTGGTTCAGGGCTAGGTTAAGAGAGACATCCTTGGTGCCTTCTTT
TGTCATGCGCGTGACGTTTTCTGCGGCAATAGCTAGGAATAATAGCTTCC
TGCCGACATTGCTTAGCGATATGCCCTTATCTCCCCCAACAATACGATAG
CGTACGAATTGAAACCAGAAAAGGAGTTTGTCTTCTATTTTGGTCTTGCG
CAGTAACTCGTAGATCTCGTAGATCGACCCCTCTTGATTCGTGCGCGTGG
CACACATTCCTGTCCTAGTACCATACAGTACCAGACGTGCTAGGAAGGTC
GAACGCGAATTTGGGGGAGGGCTCGCGAATTTCATTTGTTAGCCCTCTCT
GCCCCCCTACTTCTGCCCCCCATTTCCCTGTGCCCGCCATCCTTATTCCC
CCGCAATTTCTCCGCCCTCCCCTCCCCCTCATTCTATACCGGTGTGGCAC
GTTGGCATGGGCCACTCTCACCTCCGACCTTCCTGTGGTTTTCGTATGCA
GATACAACACGCCCATTTCGACGGCCTCGCTTCGATTCGATTTGGTGAGC
TACTGTCCGCATGTGCTTGCCTGCTTGCACTTTTTTTTTTTTTACAGTTT
CCCCTTCCTGGTGGACAACTGCGCGCTGTGCTACGGATCGGAGCGGGCTT
CGATTGTCGAGGGCGGGGCCGGCTCCATCGGGCAAGAGTTCTGCGACATC
TGTATCGACTTGGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:467134..470701-

>mRNA_Ecto-sp6_S_contig94.18538.1 ID=mRNA_Ecto-sp6_S_contig94.18538.1|Name=mRNA_Ecto-sp6_S_contig94.18538.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=777bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:467134..470701- (Ectocarpus species6 EcLAC_371)
ATGTGGTTCACGGGCAGACAGCCGGCGGCCGACTCGCGCAAGAGCGCTAC
TGCTACGTCGTTGCGAAGCAGTAGGCTACTCGGCCATCACGTCGACAGCA
GCAGGAGCGTTGGAGGGGGCATGATGGGAAGCCAATCTCGGTGGGGATGG
AGCCGCTCAGAGACCGAGCGGCTGGTTCGGCTGCAAGCCGTCGTGAGGGG
GTGGCTGTTGCGGCGAAAGGTTAATTGGATCCCTGCGAGAGACCTGGAGG
CTGTGCTGAAGGACCTGGACCAGAGGGACAAGGGCTTGAGAAGGCTGGTG
GCCTACCTTGTCTTCTTTCTGCTCTTCTTCGGGATCCTCATCCTAGAGTC
CGACGTCACCTTCCAGCACTCCGTCGAGACCGGCATTACAAAATTCATCA
ACCAGGTAACGTCTGGGCCGGACGGTAACATACGACTAGAAGACGTTTCT
ACTCGAGAAGAGTTCTCCGCCTGGGCGCTATCCCTGTACATGGCCATGTA
CGACGGGACGGAGGTTGAGGACGTCTGCAACGCCTGTGTGGCCCTCAGGG
CGGAGGATTACAACAGGAACTTTTTCCTAGAAGTTTCCGATTCTACGTGG
GGCACAGACGTGCCGTATAACGCTTCTTCTTCTGGTAGTGGAGGCGGCAA
CGATAGTTTCCCCTTCCTGGTGGACAACTGCGCGCTGTGCTACGGATCGG
AGCGGGCTTCGATTGTCGAGGGCGGGGCCGGCTCCATCGGGCAAGAGTTC
TGCGACATCTGTATCGACTTGGAGTGA
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