mRNA_Ecto-sp6_S_contig94.18535.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig94.18535.1 vs. uniprot
Match: D7G2W6_ECTSI (Putative growth-on protein GRO10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2W6_ECTSI) HSP 1 Score: 374 bits (960), Expect = 1.250e-123 Identity = 185/208 (88.94%), Postives = 191/208 (91.83%), Query Frame = 1
Query: 10 MGLLMLPXXXXXXXXXXXXXXVTPRTLVVTVGLVLLLLAAGFDSAEAVLPTGELRLADGSTAYAAPAWFGLRLPEEKEATYLPLRVPKSDADGCGKVTVEDPPDGGGGFVLLVERGNCFFDAKALAAQEAGAEGLVVMNSVEGIYQDNSVATDKYDYECDNGEGWVKDLQSPVWDPLNTDETCWSNDACDSGVCVVTNVTDATLGTKV 633
MGLLMLP VTPRTL VT+GLVLLLLAAGFDSAEAVLPTGELRLADGSTAYAAPAWFGL+LPEEKEAT+LPLRVPKSDADGCGKVTVEDPP+GGGGFVLLVERGNCFFDAKALAAQEAGAEGLVVMNSVEGIYQDNS ATDKYDYECDNGEGWVKDLQ+PVWDPLNTDE CWSNDACDSGVCVVTNVT+ATLGTKV
Sbjct: 1 MGLLMLPPSSRRGSGGLSPGSVTPRTLAVTMGLVLLLLAAGFDSAEAVLPTGELRLADGSTAYAAPAWFGLQLPEEKEATHLPLRVPKSDADGCGKVTVEDPPEGGGGFVLLVERGNCFFDAKALAAQEAGAEGLVVMNSVEGIYQDNSAATDKYDYECDNGEGWVKDLQTPVWDPLNTDEACWSNDACDSGVCVVTNVTEATLGTKV 208
BLAST of mRNA_Ecto-sp6_S_contig94.18535.1 vs. uniprot
Match: A0A836CBZ5_9STRA (Putative growth-on protein GRO10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBZ5_9STRA) HSP 1 Score: 125 bits (315), Expect = 7.130e-30 Identity = 73/185 (39.46%), Postives = 99/185 (53.51%), Query Frame = 1
Query: 88 LVVTVGLVLLLLAAGFDSAEAVLPTGELRLADGS-TAYAAPAWFGLRLPEEKEATYLPLRVPKSDADGCGKVT--VEDPPDGGGGFVLLVERGNCFFDAKALAAQEAGAEGLVVMNSVEGIYQDNSVATDKYDYECDNGEGWVKDLQSPVWDPLNTDETCWSNDACDSGVCVVTNVTDATLGTKV 633
LV T ++LL S AVLPT +L + G + YAA + F LP A + P+ VP C + PP F+++ ERG C FD KA +A+ AGA +VV+N+ E Y D+ DYEC NGEGW+ + SP W N C ++ C SG C++TNVTD++LGTKV
Sbjct: 15 LVSTASWLVLLAVLPIVSISAVLPTAQLVVDSGEGSGYAAISSFSSVLPSSTSAAWTPMVVPSGSRTACDEALDIKASPP-----FIVVAERGECSFDFKAGSAKAAGASAIVVVNTWEATYGGREYGEDRTDYECGNGEGWLPSVTSPAWSAANDVPACSADARCASGRCMLTNVTDSSLGTKV 194
BLAST of mRNA_Ecto-sp6_S_contig94.18535.1 vs. uniprot
Match: A0A7S0SRX7_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRX7_9STRA) HSP 1 Score: 122 bits (305), Expect = 2.030e-28 Identity = 74/181 (40.88%), Postives = 107/181 (59.12%), Query Frame = 1
Query: 94 VTVGLVLLLLAAGFDSAEAVLPTGELRLA-DGSTAYAAPAWFGLRLPEEKEATYLPLRVPKSDA-DGCGK--VTVEDPPDGGGGFVLLVERGNCFFDAKALAAQEAGAEGLVVMNSVEGIYQDNSVATDKYDYECDNGEGWVKDLQSPVW-DPLNT--DETCWSNDACDSGVCVVTNVTDA 615
+T + ++L + F S +++PTGEL++ + Y AP FG L +E E +Y L + D DGC V++++ F LLV RGNC F KA+AA+ GA G+++ NS+EGIYQD S A D DY+CD G G+V LQ P++ D ++ +C CDSG CV+TNVTD+
Sbjct: 3 ITFNFLTIILLSIFISIYSIIPTGELKIRRTDNIIYVAPGSFGTSLEKESETSYKRLLLVNGDTHDGCENPSVSIKNIQS----FYLLVSRGNCSFVDKAIAAESIGAVGVIIYNSLEGIYQDRSYALDT-DYDCDKGSGYVTSLQYPIYSDEMDALMPTSCTGASTCDSGKCVLTNVTDS 178
BLAST of mRNA_Ecto-sp6_S_contig94.18535.1 vs. uniprot
Match: A0A7S2H102_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H102_9STRA) HSP 1 Score: 104 bits (259), Expect = 2.760e-22 Identity = 62/141 (43.97%), Postives = 79/141 (56.03%), Query Frame = 1
Query: 103 GLVLLLLAAGFDSAEAVLPTGELRL--ADGSTAYAAPAWFGLRLPEEKEATYLPLRVPKSDADGCGKVTVEDPPDGGGGFVLLVERG-NCFFDAKALAAQEAGAEGLVVMNSVEGIYQDNSVATDKYDYECDNGEGWVKDL 516
GLVL+ L +S LPTGE+ L G+ Y APA F LPEE E L + P + DGC + LLV+R NC F+A+ALAAQ+ GL+V NS+EGIY++ S TDKYDYECDNG + +
Sbjct: 21 GLVLVTL----NSVLGALPTGEIGLHHTGGAKIYCAPAVFSPYLPEESEHLSLKIVRPTNLQDGCDPKLPTSVVANARDYALLVQRSPNCTFEARALAAQQTNVSGLIVQNSIEGIYKNRSYTTDKYDYECDNGRSYTTSI 157
BLAST of mRNA_Ecto-sp6_S_contig94.18535.1 vs. uniprot
Match: G4Z3F2_PHYSP (PA domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z3F2_PHYSP) HSP 1 Score: 84.0 bits (206), Expect = 3.200e-15 Identity = 64/191 (33.51%), Postives = 92/191 (48.17%), Query Frame = 1
Query: 112 LLLLAAGFDSAEAVLPTGELRL-------------ADGSTAYAAPAWFGLRLPEEKEATYLPL-RVPKSDADGCGKVTV-EDPPDGGGGFVLLVERGNCFFDAKALAAQEAGAEGLVVMNSVEGIYQDNS--------VATDKYDYECDNGEGWVKDLQSPVWDPLNTD-ETCWSNDACDSGVCVVTNVTD 612
LL L A VLPTG L L A+ + +A A +G+ LP ++ + L ++P + DGC + D G V++V+RGNC F AKA AQ AGA+GL+V + +Y+ VA ++Y+C GE +V L +PVW TD E C + C S CV+T T+
Sbjct: 9 LLHLLLALPGARGVLPTGVLSLDLLPQTPHEPPAFAEQLCSPSAAAGWGVSLPARHDSRWKTLLQLPTDNRDGCASYQLPSDAATSVHGAVVVVDRGNCSFVAKAQKAQAAGAKGLIVRGTKRAVYEAVMTSVANLAVVAKPVFEYDCSRGEAFVDQLATPVW---QTDAEECSGDHRCASRSCVLTGHTE 196
BLAST of mRNA_Ecto-sp6_S_contig94.18535.1 vs. uniprot
Match: A0A6G0XXF2_9STRA (PA domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXF2_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.700e-13 Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 1
Query: 334 FVLLVERGNCFFDAKALAAQEAGAEGLVVMNSVEGIYQDN-SVATDKYD----YECDNGEGWVKDLQSPVWDPLNTDETCWSNDACDSGVCVVT 600
F+LLV+RGNC F KAL AQ+ GA GL++ ++VE IY + V KYD ++CD G+ + L P W LN C S C SG C+ T
Sbjct: 107 FILLVDRGNCTFTQKALIAQQLGAVGLIITDTVEAIYNASVRVNGSKYDKKGAFDCDQGQATLSSLALPPWSDLNDAAACSSASTCTSGRCIPT 200
BLAST of mRNA_Ecto-sp6_S_contig94.18535.1 vs. uniprot
Match: A0A6A3TN47_9STRA (PA domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TN47_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 4.290e-13 Identity = 63/203 (31.03%), Postives = 95/203 (46.80%), Query Frame = 1
Query: 118 LLAAGFDSAEAVLPTGELRL-------------ADGSTAYAAPAWFGLRLPEEKEATYLPL-RVPKSDADGCGKVTVE-DPPDGGGGFVLLVERGNCFFDAKALAAQEAGAEGLVVMNSVEGIYQ---------DNSVAT--------------DKYDYECDNGEGWVKDLQSPVWDPLNTD-ETCWSNDACDSGVCVVTNVT 609
LL A AVLPTG L L A+ + ++ A +G+ LP ++ + L ++P + DGC + D G V++V+RGNC F AKA AQ AGA+GL+V + +Y+ +SVA+ ++++C GE +V+ L +PVW TD E C + C S CV+T T
Sbjct: 9 LLLLALPCARAVLPTGILSLDLLPQTPHEPPAFAEQLCSPSSAAGWGVALPVSHDSRWKTLVQLPNDNRDGCASYQLSNDVTASAHGVVVVVDRGNCSFVAKAQKAQAAGAKGLIVRGTKRAVYEAVISHNTTNSSSVASAGATGVANLAVVSKPVFEFDCSRGEAFVETLATPVW---QTDAEQCSGDHRCASRSCVLTGHT 208
BLAST of mRNA_Ecto-sp6_S_contig94.18535.1 vs. uniprot
Match: A0A3R7WNZ2_9STRA (PA domain-containing protein n=3 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7WNZ2_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 5.760e-13 Identity = 65/206 (31.55%), Postives = 98/206 (47.57%), Query Frame = 1
Query: 115 LLLAAGFDSAEAVLPTG--ELRLADGSTAYAAP-----------AWFGLRLPEEKEATYLPL-RVPKSDADGCGKVTVEDPPDGG-GGFVLLVERGNCFFDAKALAAQEAGAEGLVVMNSVEGIYQ--------DNSVAT------------------DK--YDYECDNGEGWVKDLQSPVWDPLNTD-ETCWSNDACDSGVCVVT 600
LLL F AE VLPTG L L S + P A +G+ LP ++ + L ++P+ DGC + D + G +++V+RGNC F AKAL AQ AGA+GL++ + + +Y+ ++S +T DK ++Y+C G+ +V L +PVW TD E C + C S CV+T
Sbjct: 5 LLLLLSFPCAECVLPTGILSLNLLPESQHESQPLTKQFCSPSVAAGWGVALPARVDSHWKTLTQLPEGKRDGCASYKLHDDAETSTDGQMVVVDRGNCSFVAKALQAQAAGAKGLIIRGTKKAVYEAVASRNSTNSSTSTLHNVETGKATAATSLESLDKPVFEYDCRRGQAFVDKLATPVW---QTDAEECKGDSRCLSRSCVLT 207
BLAST of mRNA_Ecto-sp6_S_contig94.18535.1 vs. uniprot
Match: A0A225VF36_9STRA (Aspartyl protease (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VF36_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 7.820e-13 Identity = 64/204 (31.37%), Postives = 93/204 (45.59%), Query Frame = 1
Query: 106 LVLLLLAAGFDSAEAVLPTGELRL------ADGSTAYA-------APAWFGLRLPEEKEATYLPL-RVPKSDADGCGKVTVEDPPDGGGGFVLLVERGNCFFDAKALAAQEAGAEGLVVMNSVEGIYQ---------------------DNSVATDK--YDYECDNGEGWVKDLQSPVWDPLNTDETCWSNDACDSGVCVVTNV 606
LVLLL G VLPTG L L +TA++ A A +G+ LP ++ + L ++P + DGC ++D G V++ +RGNC F AKA AQ AGA+GL+V + +Y+ N DK ++Y+C G+ V L +PVW L + C + C S CV+T V
Sbjct: 5 LVLLLALPGV---HCVLPTGLLSLDLLPQSPHETTAFSELLCSPSAAAGWGVALPARHDSRWKTLTQLPSENRDGCASYQLQDTSVHGA--VVVADRGNCSFVAKAFKAQAAGAKGLIVRGTKRAVYEAIVSRNSTNSTFVTSGNTETGTNLAVLDKPVFEYDCSRGQALVDVLATPVW--LTDSQLCSGDRRCTSKSCVLTGV 201
BLAST of mRNA_Ecto-sp6_S_contig94.18535.1 vs. uniprot
Match: A0A024UW86_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UW86_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 1.950e-12 Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 1
Query: 325 GGGFVLLVERGNCFFDAKALAAQEAGAEGLVVMNSVEGIYQDN-SVATDKYD----YECDNGEGWVKDLQSPVWDPLNTDETCWSNDACDSGVCVVT 600
G F+LLVERGNC F KALAAQ+AGA +++ ++VE IY + V KYD ++C G + + SP W LN C ++ C S C+ T
Sbjct: 104 GSRFILLVERGNCTFTEKALAAQQAGAAAVIIADTVEAIYNSSVRVNGSKYDKGGAFDCSQGSAVLPSVASPPWSDLNNAAACRTSPLCTSQRCIPT 200 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig94.18535.1 >prot_Ecto-sp6_S_contig94.18535.1 ID=prot_Ecto-sp6_S_contig94.18535.1|Name=mRNA_Ecto-sp6_S_contig94.18535.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=208bp MGLLMLPPSSRRGSGGSSASSVTPRTLVVTVGLVLLLLAAGFDSAEAVLPback to top mRNA from alignment at Ecto-sp6_S_contig94:442298..444253+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig94.18535.1 ID=mRNA_Ecto-sp6_S_contig94.18535.1|Name=mRNA_Ecto-sp6_S_contig94.18535.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1956bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:442298..444253+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:442298..444253+ >mRNA_Ecto-sp6_S_contig94.18535.1 ID=mRNA_Ecto-sp6_S_contig94.18535.1|Name=mRNA_Ecto-sp6_S_contig94.18535.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:442298..444253+ (Ectocarpus species6 EcLAC_371)back to top |