mRNA_Ecto-sp6_S_contig94.18530.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: D7G2W2_ECTSI (GroES chaperonin, plastidal n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2W2_ECTSI) HSP 1 Score: 502 bits (1293), Expect = 5.810e-175 Identity = 282/289 (97.58%), Postives = 282/289 (97.58%), Query Frame = 3
Query: 42 MAPVLNTLATLAVVASSTSAFVVTPGEVRPRSLTTAAAXXXXXXXXXXXXXXXXXXXSRRAPAGLLHSSETTAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 908
MAPVLNTLATLAVVASSTSAFVVTPGEVRPRSLTTAAA XXXXXXXXXXXXXXXX SRRAP GLL SSETTAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTA GEGKRHWDTGVKIPITVEVGERVVYGNFDGT VQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW
Sbjct: 1 MAPVLNTLATLAVVASSTSAFVVTPGEVRPRSLTTAAAGSXXXXXXXXXXXXXXXXRSRRAPVGLLRSSETTAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAVGEGKRHWDTGVKIPITVEVGERVVYGNFDGTSVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 289
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: A0A836CC47_9STRA (Chaperonin 10-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC47_9STRA) HSP 1 Score: 206 bits (523), Expect = 4.170e-60 Identity = 96/209 (45.93%), Postives = 151/209 (72.25%), Query Frame = 3
Query: 282 ELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 908
++R PL P+ DT++VK+ + K T+GG+FLP M V+ T GTV AAG GKRHW+TG P+ V+ G++V++G FDG+ V+Y G++HLL+R + L+ YEG+ + TA+M+GDR+L+++ V + + A+GV++A A R + T+G+VVK+GPGR+ P+G +P+ C VGD +K++DFAAE + +E L+ D + V I+N D++AKW
Sbjct: 1 QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRI--VRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 207
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: K0T1C8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T1C8_THAOC) HSP 1 Score: 176 bits (445), Expect = 3.700e-48 Identity = 97/213 (45.54%), Postives = 141/213 (66.20%), Query Frame = 3
Query: 270 LDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 908
L+ +E+ G LTP + V+VK+ + TEGG+ L +K T GTV +AG GK H ++G+ P+ VE G+ VVYG +DGT V+Y G +H L+RD ++L+ ++G+++TLDTA ++ D VL++V + T+S G+LIA SA + +P+ G VVKVGPGRM +G +M + VGD VKY+DFA + IEG DEF +V R DILAK+
Sbjct: 38 LEGREIEGALTPTNNFVLVKIAPIEDETEGGILLTGSAKIKKTEGTVISAGPGKTHQESGLLFPMPVESGDGVVYGKYDGTEVEYDGDKHTLIRDDDILVKFKGDKLTLDTADVISDNVLVKVDDDGEETAS---GLLIAASAKKGGKPSTGTVVKVGPGRMASNGEIMTVDIGVGDMVKYRDFAGNEVTIEG---DEFSVV--RMTDILAKF 242
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: W7TNB8_9STRA (20 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB8_9STRA) HSP 1 Score: 164 bits (415), Expect = 1.180e-43 Identity = 91/218 (41.74%), Postives = 140/218 (64.22%), Query Frame = 3
Query: 255 TAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 908
T + LD +E+ GPL P+ + ++VKV + ++ GG+ LP K T G V AAG G++H +T V +P+ V+ G +V+YG FDG V Y G+ H+L+RD ++L+ + G +TLD + DR+L++VK K SA G+L+A S T++ RPT G+V+KVGPGR+ +G + + + GD VK+KDFA I+I+ DE LV + +VD+LA+W
Sbjct: 45 TRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVK---KAQEKSAGGILLAPSMTKA-RPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQ----DENYLV-MYSVDVLARW 253
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: A0A8J2WID0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WID0_9STRA) HSP 1 Score: 163 bits (413), Expect = 1.590e-43 Identity = 90/217 (41.47%), Postives = 133/217 (61.29%), Query Frame = 3
Query: 261 EYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGE-EITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 908
+Y LD+ + GPL PV + ++VK+D T+GGVFLP K + G V AAG GK H DTGV +P V G+RV+YG FDGT V+Y G +H L++D ++L+++ G+ +TL + + D VL+QV V + T+S G+ +A + TR T G VVK G GR+ G +P+ EVG+ VK+KD+A I+++G + + +R D LAKW
Sbjct: 30 DYTLDDAPIGGPLEPVANYILVKIDDGIDATKGGVFLPDQAKEKPSAGIVVAAGAGKAHPDTGVVVPNPVTEGDRVLYGKFDGTSVKYCGEDHQLIKDDDILLSWAGDASMTLGEVKCVADNVLVQVTKVEEETAS---GIALAAGVSEQTRTTSGVVVKTGTGRVAADGASVPVPVEVGESVKFKDYAGADIRLDGED-----YIVVRVPDCLAKW 238
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: A0A835YMZ7_9STRA (Chaperonin 10-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMZ7_9STRA) HSP 1 Score: 159 bits (401), Expect = 5.030e-42 Identity = 83/202 (41.09%), Postives = 129/202 (63.86%), Query Frame = 3
Query: 255 TAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIE-GLET 857
TAE+ L K + GPL P+ + ++V+V + A T GGV L + + T GTV A G GK+H +TGV+IP+ VG++V+YG FDGT ++Y G +H +RDT++L Y G+ +T +T +M+GD++L++V+ + TSS L A+ + +PT+G+V+ VGPGR G +PM + GD +K++DFA I + GL T
Sbjct: 8 TAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGL--FLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRT 207
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: B8CCQ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCQ7_THAPS) HSP 1 Score: 157 bits (398), Expect = 2.360e-41 Identity = 91/228 (39.91%), Postives = 139/228 (60.96%), Query Frame = 3
Query: 225 PAGLLHSSETTAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 908
P L S +L+ +E+ G LTP + V+VKV + + T GG+ L +K T GTV + G GK H ++G+ P+ V G VVYG +DGT + Y G H L+RD ++L+ ++G+ +TLD ++ D VL++V + TS G+LIA ++ + ++P+ G+VVKVGPGRM +G +M + VGD VK++DFA +QIEG +E+ +V R DILAK+
Sbjct: 22 PYTSLSSRTRPLSVKLEGREIDGVLTPTNNFVLVKVAEIEEETAGGILLTGSAKIKKTEGTVISTGPGKTHQESGILFPMPVTPGNGVVYGKYDGTEIVYDGDRHTLIRDDDILVKFDGK-LTLDNVDVVSDNVLVKVNDDQEATSG---GLLIAATSKKGSKPSTGEVVKVGPGRMASNGEIMTVDISVGDEVKFRDFAGNEVQIEG---EEYAVV--RMTDILAKF 240
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: A0A7S2KVZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KVZ8_9STRA) HSP 1 Score: 155 bits (393), Expect = 9.650e-41 Identity = 79/208 (37.98%), Postives = 127/208 (61.06%), Query Frame = 3
Query: 222 APAGLLHSSETTAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIE 845
AP + + + EL+ +++ G L P + ++VK+ + + TEGG+ L K T G V + G G+ H ++G+ P+ V GE V+YG +DGT + Y G +H L+RDT++++ Y G+++TL+ + D VL++V G A+G+LIA SA+ +++P+ G VVKVGPGRM +G MM M VGD +K++DFA + IE
Sbjct: 25 APTPFTTRQQISLQVELEGRDIEGALVPCTNFILVKIAEAEDQTEGGIILSGRAKQKKTEGVVVSIGPGRTHQESGITFPMPVSPGEGVLYGKYDGTELDYDGCKHTLVRDTDIMVKYSGDKMTLENCDVTSDSVLVKVNR--SGEEEMASGLLIASSASGNSKPSTGTVVKVGPGRMAQNGEMMDMDVAVGDEIKFRDFAGNEVSIE 230
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: A0A6H5K7K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K5_9PHAE) HSP 1 Score: 153 bits (387), Expect = 8.630e-40 Identity = 81/216 (37.50%), Postives = 127/216 (58.80%), Query Frame = 3
Query: 219 RAPAGLLHSSET----TAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLE 854
R PA L S T TA+Y LD+K + GPLTP+ + ++VKV + ++GG+ LP+ VK T G V + G GK H +TGV + + VG++V+YG FDGT V Y G++H +RD ++L Y GE + T +M+ D +L++V P+ T++ + +L + T G+VV GPGR G ++PM GD VK++ FA + ++G++
Sbjct: 12 RPPASSLVSMSTAETETAQYLLDKKAIGGPLTPIANYILVKVRSKDVASQGGIILPEKAQVKPTEGVVVSMGPGKTHPETGVPVDMPCAVGDKVLYGEFDGTAVDYVGTDHQFVRDQDILFVYSGERMEPSTIKMIRDELLVKVD--PEATTTKSGLLLGQKEENTGEGSTTGEVVATGPGRSSSDGEIVPMSVATGDFVKFRPFAGSEVSLQGVD 225
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: A0A7S2XVL1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XVL1_9STRA) HSP 1 Score: 152 bits (385), Expect = 2.040e-39 Identity = 85/226 (37.61%), Postives = 135/226 (59.73%), Query Frame = 3
Query: 231 GLLHSSETTAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 908
G+ SS + L+ +++ G L P + V+VK+ + T GG+FL ++ T GTV + G GK H ++GV + V G+ VVYG +DGT ++Y H L+RD ++++ + GE +TLD+ + G+ VL+ VK+ SA+G+LIA R ++P+ G++VKVGPG+M +G +M M EVG VK++DFA I+I+G E +R D+LAK+
Sbjct: 28 GVTKSSASQLGAILEGRKIEGELKPTNNFVLVKLAPIEESTSGGIFLTGSAKIEKTEGTVISVGPGKTHTESGVTFDMPVIPGDGVVYGKYDGTELEYNDERHTLIRDDDIMVKFTGE-LTLDSVEVTGENVLIAVKS--SDDEESASGLLIAAQTKRGSKPSTGEIVKVGPGKMASNGKLMDMDVEVGAMVKFRDFAGNEIKIDGKE-----FAVVRYTDLLAKF 245 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig94.18530.1 >prot_Ecto-sp6_S_contig94.18530.1 ID=prot_Ecto-sp6_S_contig94.18530.1|Name=mRNA_Ecto-sp6_S_contig94.18530.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=290bp MAPVLNTLATLAVVASSTSAFVVTPGEVRPRSLTTAAAGSTATARRVGGGback to top mRNA from alignment at Ecto-sp6_S_contig94:393909..397904- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig94.18530.1 ID=mRNA_Ecto-sp6_S_contig94.18530.1|Name=mRNA_Ecto-sp6_S_contig94.18530.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3996bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:393909..397904- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:393909..397904- >mRNA_Ecto-sp6_S_contig94.18530.1 ID=mRNA_Ecto-sp6_S_contig94.18530.1|Name=mRNA_Ecto-sp6_S_contig94.18530.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=870bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:393909..397904- (Ectocarpus species6 EcLAC_371)back to top |