mRNA_Ecto-sp6_S_contig94.18530.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig94.18530.1
Unique NamemRNA_Ecto-sp6_S_contig94.18530.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: D7G2W2_ECTSI (GroES chaperonin, plastidal n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2W2_ECTSI)

HSP 1 Score: 502 bits (1293), Expect = 5.810e-175
Identity = 282/289 (97.58%), Postives = 282/289 (97.58%), Query Frame = 3
Query:   42 MAPVLNTLATLAVVASSTSAFVVTPGEVRPRSLTTAAAXXXXXXXXXXXXXXXXXXXSRRAPAGLLHSSETTAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 908
            MAPVLNTLATLAVVASSTSAFVVTPGEVRPRSLTTAAA  XXXXXXXXXXXXXXXX SRRAP GLL SSETTAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTA GEGKRHWDTGVKIPITVEVGERVVYGNFDGT VQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW
Sbjct:    1 MAPVLNTLATLAVVASSTSAFVVTPGEVRPRSLTTAAAGSXXXXXXXXXXXXXXXXRSRRAPVGLLRSSETTAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAVGEGKRHWDTGVKIPITVEVGERVVYGNFDGTSVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 289          
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: A0A836CC47_9STRA (Chaperonin 10-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC47_9STRA)

HSP 1 Score: 206 bits (523), Expect = 4.170e-60
Identity = 96/209 (45.93%), Postives = 151/209 (72.25%), Query Frame = 3
Query:  282 ELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 908
            ++R PL P+ DT++VK+ + K  T+GG+FLP M  V+ T GTV AAG GKRHW+TG   P+ V+ G++V++G FDG+ V+Y G++HLL+R  + L+ YEG+  +  TA+M+GDR+L+++  V +   + A+GV++A  A R  + T+G+VVK+GPGR+ P+G  +P+ C VGD +K++DFAAE + +E L+ D  + V I+N D++AKW
Sbjct:    1 QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRI--VRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 207          
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: K0T1C8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T1C8_THAOC)

HSP 1 Score: 176 bits (445), Expect = 3.700e-48
Identity = 97/213 (45.54%), Postives = 141/213 (66.20%), Query Frame = 3
Query:  270 LDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 908
            L+ +E+ G LTP  + V+VK+   +  TEGG+ L     +K T GTV +AG GK H ++G+  P+ VE G+ VVYG +DGT V+Y G +H L+RD ++L+ ++G+++TLDTA ++ D VL++V    + T+S   G+LIA SA +  +P+ G VVKVGPGRM  +G +M +   VGD VKY+DFA   + IEG   DEF +V  R  DILAK+
Sbjct:   38 LEGREIEGALTPTNNFVLVKIAPIEDETEGGILLTGSAKIKKTEGTVISAGPGKTHQESGLLFPMPVESGDGVVYGKYDGTEVEYDGDKHTLIRDDDILVKFKGDKLTLDTADVISDNVLVKVDDDGEETAS---GLLIAASAKKGGKPSTGTVVKVGPGRMASNGEIMTVDIGVGDMVKYRDFAGNEVTIEG---DEFSVV--RMTDILAKF 242          
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: W7TNB8_9STRA (20 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB8_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.180e-43
Identity = 91/218 (41.74%), Postives = 140/218 (64.22%), Query Frame = 3
Query:  255 TAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 908
            T  + LD +E+ GPL P+ + ++VKV   + ++ GG+ LP     K T G V AAG G++H +T V +P+ V+ G +V+YG FDG  V Y G+ H+L+RD ++L+ + G  +TLD    + DR+L++VK   K    SA G+L+A S T++ RPT G+V+KVGPGR+  +G +  +  + GD VK+KDFA   I+I+    DE  LV + +VD+LA+W
Sbjct:   45 TRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVK---KAQEKSAGGILLAPSMTKA-RPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQ----DENYLV-MYSVDVLARW 253          
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: A0A8J2WID0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WID0_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.590e-43
Identity = 90/217 (41.47%), Postives = 133/217 (61.29%), Query Frame = 3
Query:  261 EYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGE-EITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 908
            +Y LD+  + GPL PV + ++VK+D     T+GGVFLP     K + G V AAG GK H DTGV +P  V  G+RV+YG FDGT V+Y G +H L++D ++L+++ G+  +TL   + + D VL+QV  V + T+S   G+ +A   +  TR T G VVK G GR+   G  +P+  EVG+ VK+KD+A   I+++G +      + +R  D LAKW
Sbjct:   30 DYTLDDAPIGGPLEPVANYILVKIDDGIDATKGGVFLPDQAKEKPSAGIVVAAGAGKAHPDTGVVVPNPVTEGDRVLYGKFDGTSVKYCGEDHQLIKDDDILLSWAGDASMTLGEVKCVADNVLVQVTKVEEETAS---GIALAAGVSEQTRTTSGVVVKTGTGRVAADGASVPVPVEVGESVKFKDYAGADIRLDGED-----YIVVRVPDCLAKW 238          
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: A0A835YMZ7_9STRA (Chaperonin 10-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMZ7_9STRA)

HSP 1 Score: 159 bits (401), Expect = 5.030e-42
Identity = 83/202 (41.09%), Postives = 129/202 (63.86%), Query Frame = 3
Query:  255 TAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIE-GLET 857
            TAE+ L  K + GPL P+ + ++V+V  + A T GGV L +    + T GTV A G GK+H +TGV+IP+   VG++V+YG FDGT ++Y G +H  +RDT++L  Y G+ +T +T +M+GD++L++V+   + TSS     L A+ +    +PT+G+V+ VGPGR    G  +PM  + GD +K++DFA   I +  GL T
Sbjct:    8 TAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGL--FLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRT 207          
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: B8CCQ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCQ7_THAPS)

HSP 1 Score: 157 bits (398), Expect = 2.360e-41
Identity = 91/228 (39.91%), Postives = 139/228 (60.96%), Query Frame = 3
Query:  225 PAGLLHSSETTAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 908
            P   L S       +L+ +E+ G LTP  + V+VKV + +  T GG+ L     +K T GTV + G GK H ++G+  P+ V  G  VVYG +DGT + Y G  H L+RD ++L+ ++G+ +TLD   ++ D VL++V    + TS    G+LIA ++ + ++P+ G+VVKVGPGRM  +G +M +   VGD VK++DFA   +QIEG   +E+ +V  R  DILAK+
Sbjct:   22 PYTSLSSRTRPLSVKLEGREIDGVLTPTNNFVLVKVAEIEEETAGGILLTGSAKIKKTEGTVISTGPGKTHQESGILFPMPVTPGNGVVYGKYDGTEIVYDGDRHTLIRDDDILVKFDGK-LTLDNVDVVSDNVLVKVNDDQEATSG---GLLIAATSKKGSKPSTGEVVKVGPGRMASNGEIMTVDISVGDEVKFRDFAGNEVQIEG---EEYAVV--RMTDILAKF 240          
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: A0A7S2KVZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KVZ8_9STRA)

HSP 1 Score: 155 bits (393), Expect = 9.650e-41
Identity = 79/208 (37.98%), Postives = 127/208 (61.06%), Query Frame = 3
Query:  222 APAGLLHSSETTAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIE 845
            AP       + + + EL+ +++ G L P  + ++VK+ + +  TEGG+ L      K T G V + G G+ H ++G+  P+ V  GE V+YG +DGT + Y G +H L+RDT++++ Y G+++TL+   +  D VL++V     G    A+G+LIA SA+ +++P+ G VVKVGPGRM  +G MM M   VGD +K++DFA   + IE
Sbjct:   25 APTPFTTRQQISLQVELEGRDIEGALVPCTNFILVKIAEAEDQTEGGIILSGRAKQKKTEGVVVSIGPGRTHQESGITFPMPVSPGEGVLYGKYDGTELDYDGCKHTLVRDTDIMVKYSGDKMTLENCDVTSDSVLVKVNR--SGEEEMASGLLIASSASGNSKPSTGTVVKVGPGRMAQNGEMMDMDVAVGDEIKFRDFAGNEVSIE 230          
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: A0A6H5K7K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K5_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 8.630e-40
Identity = 81/216 (37.50%), Postives = 127/216 (58.80%), Query Frame = 3
Query:  219 RAPAGLLHSSET----TAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLE 854
            R PA  L S  T    TA+Y LD+K + GPLTP+ + ++VKV  +   ++GG+ LP+   VK T G V + G GK H +TGV + +   VG++V+YG FDGT V Y G++H  +RD ++L  Y GE +   T +M+ D +L++V   P+ T++ +  +L  +        T G+VV  GPGR    G ++PM    GD VK++ FA   + ++G++
Sbjct:   12 RPPASSLVSMSTAETETAQYLLDKKAIGGPLTPIANYILVKVRSKDVASQGGIILPEKAQVKPTEGVVVSMGPGKTHPETGVPVDMPCAVGDKVLYGEFDGTAVDYVGTDHQFVRDQDILFVYSGERMEPSTIKMIRDELLVKVD--PEATTTKSGLLLGQKEENTGEGSTTGEVVATGPGRSSSDGEIVPMSVATGDFVKFRPFAGSEVSLQGVD 225          
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Match: A0A7S2XVL1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XVL1_9STRA)

HSP 1 Score: 152 bits (385), Expect = 2.040e-39
Identity = 85/226 (37.61%), Postives = 135/226 (59.73%), Query Frame = 3
Query:  231 GLLHSSETTAEYELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVVYGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 908
            G+  SS +     L+ +++ G L P  + V+VK+   +  T GG+FL     ++ T GTV + G GK H ++GV   + V  G+ VVYG +DGT ++Y    H L+RD ++++ + GE +TLD+  + G+ VL+ VK+       SA+G+LIA    R ++P+ G++VKVGPG+M  +G +M M  EVG  VK++DFA   I+I+G E        +R  D+LAK+
Sbjct:   28 GVTKSSASQLGAILEGRKIEGELKPTNNFVLVKLAPIEESTSGGIFLTGSAKIEKTEGTVISVGPGKTHTESGVTFDMPVIPGDGVVYGKYDGTELEYNDERHTLIRDDDIMVKFTGE-LTLDSVEVTGENVLIAVKS--SDDEESASGLLIAAQTKRGSKPSTGEIVKVGPGKMASNGKLMDMDVEVGAMVKFRDFAGNEIKIDGKE-----FAVVRYTDLLAKF 245          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2W2_ECTSI5.810e-17597.58GroES chaperonin, plastidal n=2 Tax=Ectocarpus Tax... [more]
A0A836CC47_9STRA4.170e-6045.93Chaperonin 10-like protein (Fragment) n=1 Tax=Trib... [more]
K0T1C8_THAOC3.700e-4845.54Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
W7TNB8_9STRA1.180e-4341.7420 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=42... [more]
A0A8J2WID0_9STRA1.590e-4341.47Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835YMZ7_9STRA5.030e-4241.09Chaperonin 10-like protein n=1 Tax=Tribonema minus... [more]
B8CCQ7_THAPS2.360e-4139.91Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2KVZ8_9STRA9.650e-4137.98Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A6H5K7K5_9PHAE8.630e-4037.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2XVL1_9STRA2.040e-3937.61Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig94contigEcto-sp6_S_contig94:393909..397904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score179.5
Seed ortholog evalue2.3e-42
Seed eggNOG ortholog159749.K0T1C8
Model size1518
KEGG koko:K04078
Hectar predicted targeting categorychloroplast
Exons3
EggNOG free text desc.Belongs to the GroES chaperonin family
EggNOG OGs2XGQX@2836,COG0234@1,KOG1641@2759
Ec32 ortholog descriptiongroES chaperonin, plastidal
Ec32 orthologEc-09_004690.1
Cds size870
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350577.4614859-UTR-Ecto-sp6_S_contig94:393908..3945151682350577.4614859-UTR-Ecto-sp6_S_contig94:393908..394515Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 393909..394515 -
1682350577.5194848-UTR-Ecto-sp6_S_contig94:397863..3979041682350577.5194848-UTR-Ecto-sp6_S_contig94:397863..397904Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 397864..397904 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350577.474486-CDS-Ecto-sp6_S_contig94:394515..3946111682350577.474486-CDS-Ecto-sp6_S_contig94:394515..394611Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 394516..394611 -
1682350577.4855473-CDS-Ecto-sp6_S_contig94:395537..3957651682350577.4855473-CDS-Ecto-sp6_S_contig94:395537..395765Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 395538..395765 -
1682350577.4959533-CDS-Ecto-sp6_S_contig94:397317..3978631682350577.4959533-CDS-Ecto-sp6_S_contig94:397317..397863Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 397318..397863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig94.18530.1prot_Ecto-sp6_S_contig94.18530.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig94 394516..397863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig94.18530.1

>prot_Ecto-sp6_S_contig94.18530.1 ID=prot_Ecto-sp6_S_contig94.18530.1|Name=mRNA_Ecto-sp6_S_contig94.18530.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=290bp
MAPVLNTLATLAVVASSTSAFVVTPGEVRPRSLTTAAAGSTATARRVGGG
ADSSSRRSRRAPAGLLHSSETTAEYELDEKELRGPLTPVEDTVMVKVDKQ
KAVTEGGVFLPKMKNVKITRGTVTAAGEGKRHWDTGVKIPITVEVGERVV
YGNFDGTLVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVK
AVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCE
VGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW*
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mRNA from alignment at Ecto-sp6_S_contig94:393909..397904-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig94.18530.1 ID=mRNA_Ecto-sp6_S_contig94.18530.1|Name=mRNA_Ecto-sp6_S_contig94.18530.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3996bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:393909..397904- (Ectocarpus species6 EcLAC_371)
GTTAGCTGTTAGCTGCGAACTCCAGTGCCAGTCCAGCAATCATGGCGCCA GTACTAAACACGCTCGCGACACTGGCCGTGGTCGCTTCGTCGACGTCGGC CTTCGTTGTCACGCCCGGCGAAGTCCGACCAAGGTCCCTGACGACAGCAG CAGCAGGGTCAACAGCAACTGCACGACGCGTGGGCGGCGGTGCGGACAGC AGCAGCAGACGATCACGAAGAGCACCGGCGGGCTTGTTGCACTCCTCGGA GACAACGGCGGAGTACGAACTGGATGAGAAGGAGCTCCGCGGGCCTCTCA CCCCAGTGGAAGACACCGTCATGGTCAAGGTGGACAAACAGAAGGCTGTC ACGGAGGGTGGAGTTTTCTTGCCCAAGATGAAGAACGTCAAGATCACCAG GGGGACTGTGACGGCGGCGGGAGAGGGGAAGAGGCACTGGGACACCGGGG TCAAGATCCCCATCACGGTAGAGGTCGGCGAGCGCGTGGTGTACGGCAAC TTCGACGGGACGTTGGTGCAGTACCAGGGCTCGGAGCACCTGCTAATGAG GGACACCGAGCTCCTCATGGCGTACGAAGGGGAAGAGGTGAACTGTGGGG CGCAGAGTCTACATGCAGAGCGCGCACCTCATCCCATTATCATGATCATG ATCATGTGTCTCAGACTAGACGCAACCCCGTTATCATGGTCATGATCATG TGTCTCAGACTAGACATAGATGGAGACCAACCAACCTTGCTGCTCTCTAC GGAGGAGCAAATTTCCGCAGTCTGGTCTCCCCTGTTGTTGCTGTTGCTTT CGCACCCACACCGTACAGCTGCTGCCATGCGCGTAGTGGGGAGAAATATG CGTGCTTTATGTTTCACGTGTAACAGCACACCGTTCCGATTGTCGATAAT ATGTTAACAATGAAGGAGCGTCAGCGAAGGCTTACCTGTATTGCCACGAT TTCCCGAGCAGCACACAGCGACATCTCCCCCGTGGGTAACAGGGTCAACA AGGCAGTTTGGTGGCCATCTTGTGCATCTTTTATTTTGTTTGCTCAAGCA GGCCATCGCGAGCATAGAGAGCAAGGGCGAGAGTTGACAAGCTCGATCGA GTCACCGTGTGTCAACAGGAACATCAGTACTGTTGTCTTATGTGCACACA ATGGAGCCCGGAAGCAGTCCAACGTTCTTCGCAGATAAAGGGAAAGGATG ATTTGGCTTGTGGGTAGGACGAGAGGAAATCATCATCACCATCCCTACCC CCCCTCCCCTAGACCCCATGGACTACGCGAAAAAGCTGAAATTGCAATTT CGAGTTGTAGGCGATCTGGACTTGCCAGAACGGAGGAAGAGGTATACCAG CCGTAGGAGAGAGGAAGAGGAGGTAGGCCCCACATAGTTGGGGAGTGTGA GTTGTACAGGAAGGAAAGAGAGGATCTCGAGGAGGAAATGAGACAGAGAG GGTGTGACATGGACAAGTTAAATTAGACAACGGCGAAAAATCGATCGTAA TTGGGGATAGATGGTGGGCACAAGAGGCCCTAGAGAGCGGAGATAAGATA TGCAAGGAATTTTTATGTAGTTTGTGGCAGAAACGTAAAGAGCTCCCAAA TGTTGGTGGTGTCTCTAGTAGGGGTAGGAACGGTGCTCCGTCTCGAAAGG GACGCGTGGTCAATGGTCAAATGACTAAGGCAAGCAACAAATGAGTACGC CCCCCACCACTAGACTTCATACCGTATTTGTGCGTGTTATCGCACCCCCG TGTTAGCGTTTTTCTATAGCGTATTTCTCCATAACCAGGGAGATATCACC TCCGAATAGGGTGGTTTTGGAAACATCTCGTCGACGGCTATCCGGAGAGA TATCAGTTGGTGTTCGCACCTCCTAGTTGGAGAAAAACGCTTTTGTATAG ACAAACGCTAAACCGGGGGTGCGCGAACACGCACAATTACGGTATGCCGC TCTGTTGTAGTTGCATTTTTCTCGATCACAACGGTGAGAAACGAAGAATC ATGTTTCTTGGGCACCCCACCTTCGCACGGAGCGCCCATCCACCCGAACT TTCCTCGAACGTTTATCCCAAGTTATCCCGTGCCCACCACCACCGTGCAC TCCCCCCCCCCCCCCCCCCTCGCATTCATTTGTCGTCAGATCACCTTGGA CACAGCTCGCATGCTCGGCGACAGGGTGCTTCTGCAGGTGAAAGCCGTAC CGAAGGGGACTTCCTCTTCCGCCGCGGGTGTTCTCATCGCCGAGTCGGCC ACGCGGTCCACCCGCCCTACAGTCGGGCAGGTGGTGAAGGTCGGCCCGGG GAGGATGGTTCCCAGCGGGCTCATGATGCCCATGTACTGCGAGGTCGGGG ACTGCGTCAAGTACAAGGTGGGTGGTGGTTGACTTTTTCGCTGCTACTGC TGCTGCTACGGGGACGGGGGACGGGGGGACCATATTGCATCTCCTTACCT CCCCCCCGTTAGGCCGAAGCCAAGAGACACGGTAGGGAGGCAGAGATAAA TAGTCCGGAGGCGAGGAACGGGCGTTTTCTCTTCCGTGGCGCCTCCTGTC CTAGGGGAAGAAGCGCAAGGAATGACTCGATTTCGGCCTCTCATGCCGGC CGTGTGATGGGAGTTGGGTCCGATCGCTCAAGGGTCCAACGAGTCCGGGC ATGGCGGTGCAGGCCATTCCAAAGCTTTTGGTTGCTCATTTTGTTTTTTT TGGGGGGGGTGGGGACATCGAGAACGTAGCCAACATTTTGCCTTGTTTTG CCTTGGGCAAGGAGCGCCCGACCTCACGCCCTGCCTTGACCTTCCTCAAG TACACGGGCTTGCTGTGTTATTTTTTGTCTATTGCTGCCTTGCTATTCCT GCACGGCTGTTTGTGCCGATTGTGTCTGTGCTGACTGCTGCTTCAATTGG CTAGAGGCAAGGTTCCGCTGCTGTTGAGGAACATAGGATTATTATCGTCT CTGATGCCGTTCTCGCTTGTTCGGTTTCACGTAATGCTGCTACGGGGCAG CGTGTTGCCAACGCACGTAGCCGTGCTCGTCGTTTTCCTGATAGTTGGCT TCAGGCACGTGTTGTATGCATAGCAGGTCTATTAGTACCACAGCCCTATA CGCACCAACACTACAACATGCAATAAAACCTCTCTGACACGCGAGGTTCA CGTGAAGATCGCTCAACTCCATTGGAGGTGGAATGAGGCTACACTTGAGG CTTGTCAGACCATCGTGCACCACTCAGCGCCTTAGTCAACGTCTGTTTAG TTTGCTGTGTTCGGCCGTGCTTGTTCGCGGCGATGACTGACAGGACTTCG CGGCAGAAGTGATCCAGATCGAAGGCCTAGAGACGGACGAGTTCGAGCTG GTCTGCATCCGCAACGTCGACATCCTCGCCAAGTGGTGACAAGGACACCC ACACACCCTTCGGTTTGGCAGAAAGCCGGAGTATTGGCGCCGACTCTGCC TCCCTTAACCCCCTTTGGTGCGGTGATAAACCGTTGACATGGCGACGCGT GCATGAATGAGTGTTTTGGCGAATTGGTTTTCGTCCGTGGCATGGGGGTT CTCGCCGACGGTGACAACACCGCCGACGGCTTGACACCTTTCGAGTTTCG TAGATGCAGTTAGTTGCCTTGGTCCCCAAATGTGCATGTATCCGTCAAAG TTGAGTGAACTCAAGCATTGTTTTTTTTTGGCCGCGGGATCACGGGTTTT TGAGCTTGCCATTCGCCGATAGGCTGTTCCGCCATTTTTGTGGTAAAACC GGCAATGAACGCGACCCTTTCTGCAGCAGTAGTTAGCAATGGCTGCGCCT TCGGTAGGGATTTTCTGTTGAACATCAGTACACCTGTAGCAAGTAACACT TTGTTCGTGCAGACGATCGATAGTGGACGTTGGCCTACCGTTGATGGTAG ATTGAAAAATTTGGAAAAACCACTTTGCAACTTCGACGGTTGGGAGGGAC GGAGCCATCAACCATGTGCTCAACGTTCGCAATGTTTTCGCCTGTC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:393909..397904-

>mRNA_Ecto-sp6_S_contig94.18530.1 ID=mRNA_Ecto-sp6_S_contig94.18530.1|Name=mRNA_Ecto-sp6_S_contig94.18530.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=870bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:393909..397904- (Ectocarpus species6 EcLAC_371)
ATGGCGCCAGTACTAAACACGCTCGCGACACTGGCCGTGGTCGCTTCGTC
GACGTCGGCCTTCGTTGTCACGCCCGGCGAAGTCCGACCAAGGTCCCTGA
CGACAGCAGCAGCAGGGTCAACAGCAACTGCACGACGCGTGGGCGGCGGT
GCGGACAGCAGCAGCAGACGATCACGAAGAGCACCGGCGGGCTTGTTGCA
CTCCTCGGAGACAACGGCGGAGTACGAACTGGATGAGAAGGAGCTCCGCG
GGCCTCTCACCCCAGTGGAAGACACCGTCATGGTCAAGGTGGACAAACAG
AAGGCTGTCACGGAGGGTGGAGTTTTCTTGCCCAAGATGAAGAACGTCAA
GATCACCAGGGGGACTGTGACGGCGGCGGGAGAGGGGAAGAGGCACTGGG
ACACCGGGGTCAAGATCCCCATCACGGTAGAGGTCGGCGAGCGCGTGGTG
TACGGCAACTTCGACGGGACGTTGGTGCAGTACCAGGGCTCGGAGCACCT
GCTAATGAGGGACACCGAGCTCCTCATGGCGTACGAAGGGGAAGAGATCA
CCTTGGACACAGCTCGCATGCTCGGCGACAGGGTGCTTCTGCAGGTGAAA
GCCGTACCGAAGGGGACTTCCTCTTCCGCCGCGGGTGTTCTCATCGCCGA
GTCGGCCACGCGGTCCACCCGCCCTACAGTCGGGCAGGTGGTGAAGGTCG
GCCCGGGGAGGATGGTTCCCAGCGGGCTCATGATGCCCATGTACTGCGAG
GTCGGGGACTGCGTCAAGTACAAGGACTTCGCGGCAGAAGTGATCCAGAT
CGAAGGCCTAGAGACGGACGAGTTCGAGCTGGTCTGCATCCGCAACGTCG
ACATCCTCGCCAAGTGGTGA
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