mRNA_Ecto-sp6_S_contig94.18527.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig94.18527.1
Unique NamemRNA_Ecto-sp6_S_contig94.18527.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig94contigEcto-sp6_S_contig94:362790..363335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size546
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350573.691149-UTR-Ecto-sp6_S_contig94:362789..3629371682350573.691149-UTR-Ecto-sp6_S_contig94:362789..362937Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 362790..362937 +
1682350573.7293797-UTR-Ecto-sp6_S_contig94:363267..3633351682350573.7293797-UTR-Ecto-sp6_S_contig94:363267..363335Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 363268..363335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350573.7115114-CDS-Ecto-sp6_S_contig94:362937..3632671682350573.7115114-CDS-Ecto-sp6_S_contig94:362937..363267Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 362938..363267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig94.18527.1prot_Ecto-sp6_S_contig94.18527.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig94 362938..363267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig94.18527.1

>prot_Ecto-sp6_S_contig94.18527.1 ID=prot_Ecto-sp6_S_contig94.18527.1|Name=mRNA_Ecto-sp6_S_contig94.18527.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=110bp
MGGATVEKYWFIQPRRGTREVRIMRRLSLCLIFGSRFVQLQEGAMVSHLP
DMSPVMSGRLWRFFFLLVLFNFRHHVVRFVLIFRPFYSSAYCFLGYSSCP
VTTQGVLQV*
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mRNA from alignment at Ecto-sp6_S_contig94:362790..363335+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig94.18527.1 ID=mRNA_Ecto-sp6_S_contig94.18527.1|Name=mRNA_Ecto-sp6_S_contig94.18527.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=546bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:362790..363335+ (Ectocarpus species6 EcLAC_371)
TGGACCTTTCCCCGATATGATGTGGGTGTTCCATTGTTTATTCTTCTGTT
TGCTTTGCTTTGTAGCTGGGTGCGGCGTGGGTGAGCGTATCGAATCACCG
GCTTAGACCGTAGATCTTGAGCTCTCCACATGGTATGTGGGGAGTGGCAT
GGGCGGTGCAACCGTGGAGAAATACTGGTTCATCCAGCCTAGGAGGGGTA
CGAGGGAGGTTAGAATCATGCGCCGGTTGTCTTTATGTTTGATCTTTGGT
TCTCGTTTTGTTCAGTTGCAAGAGGGGGCGATGGTTTCGCATTTACCCGA
CATGTCGCCGGTGATGTCTGGACGTTTGTGGCGTTTCTTTTTTCTTCTGG
TACTATTCAATTTTCGTCATCATGTGGTAAGGTTTGTGTTGATATTCAGG
CCCTTTTATTCTAGCGCATACTGCTTTTTGGGTTACAGCAGTTGCCCTGT
GACCACGCAAGGCGTCCTGCAAGTTTGACGGACGTTAAAAGACTCTGAAC
AGAAATCAGAATGTATTGTTGTGGGAAGACCAAAACAACCAACGAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:362790..363335+

>mRNA_Ecto-sp6_S_contig94.18527.1 ID=mRNA_Ecto-sp6_S_contig94.18527.1|Name=mRNA_Ecto-sp6_S_contig94.18527.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:362790..363335+ (Ectocarpus species6 EcLAC_371)
ATGGGCGGTGCAACCGTGGAGAAATACTGGTTCATCCAGCCTAGGAGGGG
TACGAGGGAGGTTAGAATCATGCGCCGGTTGTCTTTATGTTTGATCTTTG
GTTCTCGTTTTGTTCAGTTGCAAGAGGGGGCGATGGTTTCGCATTTACCC
GACATGTCGCCGGTGATGTCTGGACGTTTGTGGCGTTTCTTTTTTCTTCT
GGTACTATTCAATTTTCGTCATCATGTGGTAAGGTTTGTGTTGATATTCA
GGCCCTTTTATTCTAGCGCATACTGCTTTTTGGGTTACAGCAGTTGCCCT
GTGACCACGCAAGGCGTCCTGCAAGTTTGA
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