mRNA_Ecto-sp6_S_contig94.18526.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig94.18526.1
Unique NamemRNA_Ecto-sp6_S_contig94.18526.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig94.18526.1 vs. uniprot
Match: A0A6H5JD38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD38_9PHAE)

HSP 1 Score: 665 bits (1715), Expect = 1.380e-236
Identity = 366/543 (67.40%), Postives = 375/543 (69.06%), Query Frame = 1
Query:   13 RAIWALLLHNVSAWWLRGETSIPDEVPPLNFSVLVGKEAGGEWLQGAEARSGDSTDALEAGVQQAEGRRSTNIPPRWDSSTCMDSWGVPELQTAVDPGGYLLFSEGREQLGNNRFLLSDGLVIARALNRTLVEFPMQHSRISTADADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLLAAEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQARAWRSSTCYSFLCNYSENLDFEGPACQTRLLRIRGRRCLPELRFAYAASAAAVFFGKH*QMVVTKLASR*SGWIDMLS**KRQVIVMKMAWKSALRREPVDLLRPNPFYLDLVGQLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSANRGVVDAIRGDYPCAMDNTVYDILNDEQDAGVKAIISGLISASADFLLASSFNGTGSNECQKPHSKYIDLITDWRLDMVGKDLSSIGQMLPLPELVEGIGDGPPLALLVLLAGLVALAAALVWDQRVIGRPRSKK 1641
            RAIW LLL  VSAWWL GETSIPDEVPPLNFSVLVG+EAG EWLQGAEARSGDST ALE GVQQ EGRRSTNIPPRWDSSTCM+SWGVPELQT VDPGGYLLFSEGR                                                      YHRILDLWAFRALLRDRLL+AE FLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQARAWR                                                                                            REPVDLLRPNPFYL LVG+LIEAQEGWKDGGFLSVQWRTETSTGNLTECYG+HVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSA  GVVDAIRGDYP AMDNTVYDILNDEQDAGVKAI+SGLISASADFLL SSFNGTGSNECQKPHSKYIDL+TDWRLD+VGKDLSSIGQMLPL  L EG  DG PLALLVLLAGLVALAA LVW+QRVIGRPRSKK
Sbjct:    4 RAIWTLLLQKVSAWWLWGETSIPDEVPPLNFSVLVGEEAGREWLQGAEARSGDSTAALE-GVQQVEGRRSTNIPPRWDSSTCMESWGVPELQTEVDPGGYLLFSEGR------------------------------------------------------YHRILDLWAFRALLRDRLLSAEGFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQARAWR--------------------------------------------------------------------------------------------REPVDLLRPNPFYLGLVGKLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGVHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSAYSGVVDAIRGDYPVAMDNTVYDILNDEQDAGVKAIVSGLISASADFLLTSSFNGTGSNECQKPHSKYIDLVTDWRLDVVGKDLSSIGQMLPLLSLEEGGEDGTPLALLVLLAGLVALAAVLVWNQRVIGRPRSKK 399          
BLAST of mRNA_Ecto-sp6_S_contig94.18526.1 vs. uniprot
Match: D7G2V9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2V9_ECTSI)

HSP 1 Score: 585 bits (1507), Expect = 3.560e-206
Identity = 310/408 (75.98%), Postives = 315/408 (77.21%), Query Frame = 1
Query:  418 MQHSRISTADADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLLAAEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQARAWRSSTCYSFLCNYSENLDFEGPACQTRLLRIRGRRCLPELRFAYAASAAAVFFGKH*QMVVTKLASR*SGWIDMLS**KRQVIVMKMAWKSALRREPVDLLRPNPFYLDLVGQLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSANRGVVDAIRGDYPCAMDNTVYDILNDEQDAGVKAIISGLISASADFLLASSFNGTGSNECQKPHSKYIDLITDWRLDMVGKDLSSIGQMLPLPELVEGIGDGPPLALLVLLAGLVALAAALVWDQRVIGRPRSKK 1641
            MQHSRISTADADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLL+AEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQ                                                                                    VIVMKMAWKSALRREPVDLLRPNP YLD VGQLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSAN GVVDAIRGDYPCAMDNTVYDILNDE+DAGVKAIISGLISASADFLL SSFNGTGSNECQKPHSKYIDL+TDWRL++VGKDLSSIGQMLP P LVEG GDG PLALLVLLAGLVALAA LVWDQRVIGRPRSKK
Sbjct:    1 MQHSRISTADADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLLSAEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQ------------------------------------------------------------------------------------VIVMKMAWKSALRREPVDLLRPNPLYLDSVGQLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSANNGVVDAIRGDYPCAMDNTVYDILNDERDAGVKAIISGLISASADFLLTSSFNGTGSNECQKPHSKYIDLVTDWRLEVVGKDLSSIGQMLPPPLLVEGGGDGQPLALLVLLAGLVALAAVLVWDQRVIGRPRSKK 324          
BLAST of mRNA_Ecto-sp6_S_contig94.18526.1 vs. uniprot
Match: A0A6H5KP62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP62_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 1.890e-85
Identity = 182/490 (37.14%), Postives = 250/490 (51.02%), Query Frame = 1
Query:    4 RAHRAIWALLLHNVSAWWLRGETSIPDEVPPLNFSVLVGKEAG-GEWLQGAEARSGDSTDALEAGVQQAEGRRSTNIPPRWDSSTCMDSWGVPELQTAVDPGGYLLFSEGREQLGNNRFLLSDGLVIARALNRTLVEFPMQHSRISTADADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLLAAEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQARAWRSSTCYSFLCNYSENLDFEGPACQTRLLRIRGRRCLPELRFAYAASAAAVFFGKH*QMVVTKLASR*SGWIDMLS**KRQVIVMKMAWKSALRREPVDLLRPNPFYLDLVGQLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSANRGVVDAIRGDYPCAMDNTVYDILNDEQDAGVKAIISGLISASADFLLASSFNGTGSNE---CQKPHSKYIDLITDWR 1461
            R  +A+ A L   V+A W+    +    V     +V +G E G GEW++G                +  E R +  +PP W S+ CM  WGVP L T  DP GYL+F  GREQLG+NR+LLSDGL IA+ LNRTLVEFP+ ++RIS AD+DLG   Y+  + LC YHRIL L AFR+L+    L  E FL +         + +L TA ++   F  Y+                                                                                      QVIVM   WKS +RREP+ L++P PFY +L  +LI+ Q+GW++  FL+VQWRTETSTGNLT CYG HVR AVE  R   GF R QVFFNTDL   +S TY++  ++  + V+  I  DYP AM++TV   L++ +D GV+++ SG+++A A  LLAS+      ++   CQK HS ++DL+ ++R
Sbjct:   58 RVLKALVATLAAAVAAVWVPSLWTRQSAVELT--TVRLGWEGGRGEWMRGQR--------------ELQERRDARFLPPEWSSADCMKRWGVPWLLTEPDPAGYLIFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRADSDLGFGAYWGLDSLCRYHRILGLGAFRSLIEAGRLDVEKFLVMTPVRPSADPMSTLKTAKDVREAFGGYED------------------------------------------------------------------------------------SQVIVMNDQWKSNIRREPLKLIKPLPFYENLARRLIDQQQGWENEAFLAVQWRTETSTGNLTACYG-HVREAVERYREQEGFDRGQVFFNTDLTPHSSGTYSSQQLAVKQQVLAMIDEDYPSAMNSTVTAYLDNLEDTGVQSLTSGVVAALARVLLASTKRKWWWSQRGVCQKIHSHFVDLVVEFR 446          
BLAST of mRNA_Ecto-sp6_S_contig94.18526.1 vs. uniprot
Match: D8LFR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR0_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 4.170e-84
Identity = 174/456 (38.16%), Postives = 234/456 (51.32%), Query Frame = 1
Query:  106 SVLVGKEAG-GEWLQGAEARSGDSTDALEAGVQQAEGRRSTNIPPRWDSSTCMDSWGVPELQTAVDPGGYLLFSEGREQLGNNRFLLSDGLVIARALNRTLVEFPMQHSRISTADADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLLAAEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQARAWRSSTCYSFLCNYSENLDFEGPACQTRLLRIRGRRCLPELRFAYAASAAAVFFGKH*QMVVTKLASR*SGWIDMLS**KRQVIVMKMAWKSALRREPVDLLRPNPFYLDLVGQLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSANRGVVDAIRGDYPCAMDNTVYDILNDEQDAGVKAIISGLISASADFLLASSFNG---TGSNECQKPHSKYIDLITDWR 1461
            +V +G E G GEW +G                +  E R +  +PP W S+ CM  WGVP L T  DP GY++F  GREQLG+NR+LLSDGL IA+ LNRTLVEFP+ ++RIS AD+DLG   Y+D + LC YHRIL L AFR+L+    L  E FL +         + +L TA ++   F  Y+                                                                                      QVIVM   WKS +RR P+ L+RP PFY +L  +LI+ Q+GW++  FL+VQWRTETSTGNLT CYG HVR AVE  R   GF R QVFFNTDL+  +S TY++  ++    V+  I  DYP AM+NTV   L++ +D GV+++ SG+++A    LLAS+      +    CQK HS ++DL+ ++R
Sbjct:   92 TVQLGWEGGRGEWTRGQR--------------KLPERRDARFLPPEWGSAGCMKRWGVPWLLTEPDPAGYIIFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRADSDLGFGAYWDLDSLCQYHRILGLGAFRSLIEAGRLDVEKFLVMTPVRPSADPMSTLRTAKDVREAFGGYED------------------------------------------------------------------------------------SQVIVMNGQWKSNIRRYPLKLIRPLPFYENLARRLIDQQQGWENEAFLAVQWRTETSTGNLTACYG-HVREAVERYREQEGFDRGQVFFNTDLMPHSSGTYSSQQLAVKLQVLAMIDEDYPSAMNNTVTAYLDNLEDTGVQSLTSGVVAALPRVLLASTERKWWWSRRGVCQKIHSHFVDLVVEFR 448          
BLAST of mRNA_Ecto-sp6_S_contig94.18526.1 vs. uniprot
Match: A0A6H5JCA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA8_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 3.970e-82
Identity = 162/460 (35.22%), Postives = 238/460 (51.74%), Query Frame = 1
Query:  166 GDSTDALEAGV-----QQAEGRRSTNIPPRWDSSTCMDSWGVPELQTAVDPGGYLLFSEGREQLGNNRFLLSDGLVIARALNRTLVEFPMQHSRISTAD-ADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLLAAEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQARAWRSSTCYSFLCNYSENLDFEGPACQTRLLRIRGRRCLPELRFAYAASAAAVFFGKH*QMVVTKLASR*SGWIDMLS**KRQVIVMKMAWKSALRREPVDLLRPNPFYLDLVGQLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSANRGVVDAIRGDYPCAMDNTVYDILNDEQDAGVKAIISGLISASADFLLASSFNGTGSNE------CQKPHSKYIDLITDWRLDMVGKDLSSIGQMLP 1509
            G+S D  E G      +QA    +   PP WDS+ CM  WGVPELQ   DP GY+++  GREQLG N+FL+SDG+ +A+AL RT VE+P++ +R++  + A +G   Y+D   LC YHRILDL +FR ++ D  +  E F T+ S   E  LL       ++   F++Y+++Q                                                                                    VIVM+  WKS   R+ +  LRPNPF++ +V  L+EAQ+ W+ G F++VQWRTE S GNLTECY   V++ VEE+R++LG+   QV FNTDL G+TS TY A+  +    V+D I  DYP A+ N ++    +  D+GV+A +SGL  AS+  ++ SS N   + +      C+KP+S YI LIT+WR +++ K+  ++ +M P
Sbjct:  187 GESFDVRENGASAGPQEQALTEGTLATPPAWDSTLCMAHWGVPELQDEPDPNGYVVYVNGREQLGGNKFLVSDGIFMAKALGRTFVEYPVKDARVAKLEEASIGLGAYWDLSELCMYHRILDLNSFRNMMVDGRIPPEAFTTIRSDSHE-VLLYHATDEEHMVDMFKDYEKYQ------------------------------------------------------------------------------------VIVMESTWKSGNERDALQFLRPNPFFVGIVRMLLEAQKDWETGEFVAVQWRTELSNGNLTECYQ-EVKALVEEQRVALGYGTHQVLFNTDLYGKTSGTYKASAQAHGAAVLDLINHDYPHALHNELHQFFTEIDDSGVRAFVSGLAVASSQVMIGSSLNDPRTKDILDAYRCEKPYSGYITLITEWREEILHKEPETVVRMFP 560          
BLAST of mRNA_Ecto-sp6_S_contig94.18526.1 vs. uniprot
Match: D7G2V8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2V8_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 2.260e-61
Identity = 102/110 (92.73%), Postives = 103/110 (93.64%), Query Frame = 1
Query:    1 LRAHRAIWALLLHNVSAWWLRGETSIPDEVPPLNFSVLVGKEAGGEWLQGAEARSGDSTDALEAGVQQAEGRRSTNIPPRWDSSTCMDSWGVPELQTAVDPGGYLLFSEG 330
            LR H AIWALLLHNVSAW L GETSIPDEVPPLNFSVLVGKEAGGEWLQGAEARSGDST ALE GVQQAEGRRSTNIPPRWDSSTCM+SWGVPELQT VDPGGYLLFSEG
Sbjct:   16 LRLHGAIWALLLHNVSAWRLWGETSIPDEVPPLNFSVLVGKEAGGEWLQGAEARSGDSTAALE-GVQQAEGRRSTNIPPRWDSSTCMESWGVPELQTEVDPGGYLLFSEG 124          
BLAST of mRNA_Ecto-sp6_S_contig94.18526.1 vs. uniprot
Match: D8LN55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN55_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 8.150e-32
Identity = 77/182 (42.31%), Postives = 111/182 (60.99%), Query Frame = 1
Query:  166 GDSTDALE----AGVQQ---AEGRRSTNIPPRWDSSTCMDSWGVPELQTAVDPGGYLLFSEGREQLGNNRFLLSDGLVIARALNRTLVEFPMQHSRISTA-DADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLLAAEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQARAWRSS 687
            G+S D  E    AG Q+    EG  +T  PP WDS+ CM  WGVPELQ   DP GY+++  GREQLG N+FL++DG+ +A+AL RT VE+P++ +R++   DA +G   Y+D   LC YHRILDL +FR ++ D  +  E F T+ S +  + LL       +I   F++ D++Q  A  S+
Sbjct:   62 GESFDVRENGASAGPQEQPLTEGTLAT--PPAWDSTLCMAHWGVPELQDEPDPNGYVVYVNGREQLGGNKFLVTDGIFMAKALGRTFVEYPVKDARVAKLEDASIGLGAYWDLSELCMYHRILDLTSFRNMMADGRIPPEAFTTIRS-DTHEVLLRHATDEEHIVDMFKDSDKYQVIAMEST 240          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JD38_9PHAE1.380e-23667.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2V9_ECTSI3.560e-20675.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KP62_9PHAE1.890e-8537.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFR0_ECTSI4.170e-8438.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCA8_9PHAE3.970e-8235.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2V8_ECTSI2.260e-6192.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LN55_ECTSI8.150e-3242.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig94contigEcto-sp6_S_contig94:357137..362412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1650
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_004720.2
Cds size723
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig94.18526.1prot_Ecto-sp6_S_contig94.18526.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig94 359757..362412 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350577.0118852-UTR-Ecto-sp6_S_contig94:357136..3573261682350577.0118852-UTR-Ecto-sp6_S_contig94:357136..357326Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 357137..357326 +
1682350577.0229645-UTR-Ecto-sp6_S_contig94:357777..3579191682350577.0229645-UTR-Ecto-sp6_S_contig94:357777..357919Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 357778..357919 +
1682350577.0326622-UTR-Ecto-sp6_S_contig94:358731..3588931682350577.0326622-UTR-Ecto-sp6_S_contig94:358731..358893Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 358732..358893 +
1682350577.0421817-UTR-Ecto-sp6_S_contig94:359323..3597561682350577.0421817-UTR-Ecto-sp6_S_contig94:359323..359756Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 359324..359756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350577.052579-CDS-Ecto-sp6_S_contig94:359756..3598611682350577.052579-CDS-Ecto-sp6_S_contig94:359756..359861Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 359757..359861 +
1682350577.0625606-CDS-Ecto-sp6_S_contig94:360622..3608141682350577.0625606-CDS-Ecto-sp6_S_contig94:360622..360814Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 360623..360814 +
1682350577.072535-CDS-Ecto-sp6_S_contig94:361191..3612871682350577.072535-CDS-Ecto-sp6_S_contig94:361191..361287Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 361192..361287 +
1682350577.0825253-CDS-Ecto-sp6_S_contig94:362082..3624121682350577.0825253-CDS-Ecto-sp6_S_contig94:362082..362412Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 362083..362412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig94.18526.1

>prot_Ecto-sp6_S_contig94.18526.1 ID=prot_Ecto-sp6_S_contig94.18526.1|Name=mRNA_Ecto-sp6_S_contig94.18526.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=241bp
MKMAWKSALRREPVDLLRPNPFYLDLVGQLIEAQEGWKDGGFLSVQWRTE
TSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATV
VSANRGVVDAIRGDYPCAMDNTVYDILNDEQDAGVKAIISGLISASADFL
LASSFNGTGSNECQKPHSKYIDLITDWRLDMVGKDLSSIGQMLPLPELVE
GIGDGPPLALLVLLAGLVALAAALVWDQRVIGRPRSKKGN*
back to top

mRNA from alignment at Ecto-sp6_S_contig94:357137..362412+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig94.18526.1 ID=mRNA_Ecto-sp6_S_contig94.18526.1|Name=mRNA_Ecto-sp6_S_contig94.18526.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5276bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:357137..362412+ (Ectocarpus species6 EcLAC_371)
CTTCGCGCGCACAGGGCAATTTGGGCGCTTCTTCTGCACAATGTGTCGGC TTGGTGGCTAAGGGGAGAAACGAGCATCCCGGACGAGGTTCCTCCTCTCA ATTTCAGTGTGCTTGTTGGGAAGGAGGCTGGCGGAGAGTGGCTGCAAGGG GCGGAGGCTAGGTCGGGCGATAGCACTGACGCACTTGAAGGTATGTCTAC TGTACAACCTCCTCCTGCTGTCACGGAGTTTTCAGTTGGGAGCGGGGTGG ACCTATTTTTGGCCCCCTCGGTATCGCTGATCACCCCATGTCGGTGTTTC AGCACGTATGTAGCCCAGGCGATAAATCCCGATCAATGTGGTATGCACAG CAGAACCCGCAGCTTACCGAAGCCCTCGAATCGGCCCACGGCGTGGCCAC GAATCTACGCCTAGTTCTACTGATAACGCCGTTCCCTGAATATTTGAACT GCTTCCAGCTTGTGCATTGCCAGAGCGTTGTTACAGACAGCGCAGTCCCA ATACAGTGATGTGTATTGGGGGCGATACGATTCTCTTCCATTCTCTGCAT CTGACGCGTTACGCGAGGAGGATCGGAGGTGGGGGAGAGACAACGACACG CCGCTACCCCAAACACAATCACGAAAACAACGAAACCTCAGCAGGGGTTC AACAAGCCGAAGGTAGACGATCGACCAACATTCCGCCACGGTGGGATTCT AGCACCTGCATGGACAGTTGGGGGGTCCCGGAGCTTCAGACGGCGGTCGA TCCGGGGGGTTACCTGTTGTTCTCGGAGGGAAGGTGCGAGTGTGCCTTAT GGTTTATTCTTGTTTAATTTCCTGTAGACAGCTGCCTCGTATGTCGGTTG ACAGTTAACCTTGGTACCTGGTGCATCACAACAGATGTCGGAGGTTGTTT GCCGACCGAGTTTCCTTGTTTTTCTCGACGATGCACTGCTCTCGATTGGT GAAGCGTGAAGTAGACCACCTGCAATTATTGCTTCCTTTTCGCAATTTCG CGTTTCGTGAGGTCTACGCGGCCGCAAACATCACAACTCAATCGATGATA TAGACATACTGACACGTGGTTTCACCCCGCCTTCCGCTGCTCATGCAGCA GTGGCACGACATGTTGGACCAACGGCTGTGTCAGGTTTTCGAGACTTGGC CACCTGCCCCACCCAACCCTCGTCGTTGCGAAGCATCCACGTCGTTAAAC TGGCTCGAGGGTACTACCTTGGTCGTGCTGAGTCGCAAGCTTCCAGTACC TGCTATCGTCGGACCTGTCCAATCGCCGTCCCACCTCTAGTCGCCAACCC ATCCCATTCCATCCCATCCTACGCCACTTTAAGATACTGGCGAAGACCGT CCTAGCATTAGTCGCCCACCCATCCCATGCCACGTTTTTTTATATTGACG TGGGGATCCTTGTGTTGGCGGTATTAAAACCGTCGGTGAAACCACCACGT CGTGAATCGCCGTTCGTCCCGAGACACCGCCGGTGTTTCGATTTTTCTTC CCCTAACCGTATCTTCGATGCTGCCACGGAAGCAGTCCCGTTTCGTCTCA ACATCGTGACCTATGATACCATGCCGACACATGCTTTCGTTTCAGGGAGC AACTAGGCAACAACAGGTTTCTCTTGTCCGATGGTCTGGTCATTGCCAGA GCTCTCAACCGCACCCTCGTCGAGTTCCCCATGCAGCACTCACGGATCTC CACGGCCGACGCGGACCTCGGGTCGTGTGACTACTTCGACTGCGAAAGAT TGTGCTCGTGAGTTACTTTGTTTTTAAGGTGTCCTGTTTCTGAGAAAATA AAACGGGTTTGGGTTGCTGCGTGTCAGCTGTGCAAATCGGGCACCGCCTT GGGCCAGGGCTCAATGGTCACAGAGTTTGTATATCGTCCTGGTCTCGAGT GCAGAGATTTTCCTTTGGGCATATTGTGTTTATTTTCCGGTGGCATTCCC CTCCTATGTGTGGCTCAGCGTACATGTTTCTGGGTCTAAGTTTAGACATC GGCGAACAGTAGTGCCGGCGATCGATCTCGAGGGAACCACACAGTCATAT TGTCACTCAGATCAGACTGCCAAGACTTACAACAAACAACCGACTAGCAA CCTCGCCGTGATCAACGGTACCCTCTTCCTCGTCCCCCCCTCCCCGTGCC TGTTCTCTGGCGGGGGAACGCAACTGTACCTCAACAGGTACCATCGAATC CTAGATCTCTGGGCGTTTCGAGCATTGCTGCGAGATCGCCTCCTGGCGGC GGAGGATTTTCTGACGGTCCTTTCGGCAGAGTGGGAGCAGACGCTGCTGC CCAGCCTCGTCACAGCGGGCAACATCACATCCTTTTTTGAGGAGTACGAC CAGTGGCAGGCGAGAGCGTGGCGGTCATCAACGTGCTACAGTTTCTTGTG CAATTATTCCGAAAACCTTGATTTTGAAGGCCCTGCTTGTCAAACACGGC TGCTGCGAATCCGAGGCAGACGTTGCCTGCCGGAACTACGGTTCGCGTAT GCGGCATCAGCTGCAGCAGTATTTTTCGGGAAGCACTAGCAGATGGTCGT GACGAAACTTGCATCGAGATGAAGTGGGTGGATTGACATGTTGTCGTGAT GAAAACGACAGGTTATTGTGATGAAGATGGCGTGGAAAAGCGCTCTCAGG CGAGAACCCGTGGATCTTCTGAGGCCAAACCCCTTCTACCTGGATTTGGT AGGACAACTCATTGAGGCGCAGGAGGTCAGTCAACCCAATACAAGTACTA TTCCCTTGCACTGTACGCCGTTGGAATGGCGGAGAGTATCACCGCCATAT ATCTGCCGCAAAATTGAGGCGGTGGTGAACATTTTAGGCTGAACACGGCA ACCACACTAGTACATGATCTAAGCACCCGAGTGTCGGTGGAGTCTTCGAT ATGGCTTAGGACGGGCCTAAGTACCTTCCTCCATCTCCGAGTAGGATGCT TGGTTGGGTGGACGTCGAATGAAAATGCCACACAGGACACGAGCATCACA CATCCGAAGAGGGTATTTCGGTACTTCGCATGTAAACCACAAGCACAAAG AAGGCAAGCATGGTTTTCCCGCAAAGCTCGCTTCTTCGGCTACTCCTGAG CCTGTCTGTCTATGGAACGAGAGACATGTCGTTCGTGCGCAAACAGGATT CACGTGTCGTCGTCCTCGCTTCTGCTTTCTTTGGGTATTCACAGCAGTAA CGGACCCAGGGCAAGGGAAAGGAGGTATTGTACTCGGGGCGACGCAAGAA AACAAGTCATTCCCCTGAACCTAAATCACCAGAAATTATGTGACACCACG TTACACAGCAAAGGTCCTGGTACCGGAAAACACATCCCGCCACGCTCCGA CTGCGCCTCTGCACAACGGTCTGAAGCTGCTTCGTTCGACGCCCCCATCA CCGCCTCGCGTGCAACCGTTCCCTGCACACGTTTGACATGTGCACGCAAC ACGACGACGACAACGACGGCGCGTTCTCGAAACAAGGGTTGGAAGGACGG CGGGTTCTTGTCTGTGCAGTGGAGGACGGAGACGTCCACCGGAAACTTGA CGGAGTGCTACGGGCTCCACGTGCGGTCGGCGGTAGAAGAGCGGCGTCTG TCGTTGGGGTTTAGTCGAAGCCAGGTGTTCTTCAACACCGACCTGGTGGG CGAGACCTCGACAACCTACAACGCCACGGTGCGACACACCGTTTGGATAC TGTACACCCAAATACACCTTAAACGGCGCCCCCTGTGGGGGACCTCGTGA AAACACAGAGCTTTCTGGAACGTTTTGACTCGGTTTTAGCGTTTTGGGGG ATTCCCCCAGTGTTGGCGCGGCTGATGCTACGATAAATTATGTTCACACA CAACAACGAATATCGCCCTTTGAGGTACTGCAGATGTCTGCTCGGAACCC TGTGCACGGCGTGTGCCCCCAAAGCTAGTTGCGGTACCGTCTTTATCCAC GACGATGCCGTCGGAATGCCTGTTACTCCTGCTCCCAATCCGAGCCTGGT CCCTCTGGTCCCGTCGACTCGCGTGTGCCGGTTGTCTCTGCTGGCTTACG AGCAGGTGGTGTCCGCGAACCGCGGCGTCGTGGATGCAATCCGCGGGGAC TACCCTTGTGCGATGGATAACACCGTCTACGACATCCTAAATGACGAGCA GGTGCGGCTTTGGGTATTAAAGCAGTATTGATCGCGTCAACGATGTCGTC GTCCACCAGTGATGAGCTGACGCCAAACAAGTATGGTATGCGTGCCTAAT AGATAGTTTTGTGTGTGTGTCTTGTCGAGGTGTTGCAGGTGTTCATTGCA AGGTTCATGACTGGTCCAGCCGTAATCCATTTGAATTTTTTCGTTTTGTT TGATGAAAGGCTTCACGCCGTGATGGTGCTATCGAAGCACAAATCAGCTC TCGACTTGTGATGCGTGCACGCTTCCAAGGAAGCAGATCCCTTGTCGCCG CCCGTACGACTGCCTAATCGCGCCCTGCGTGTCTGAAAGAAGGAATAATC GAACATCATGCTCTCTCTCGCTCATAAGCGACGACGGCTGATTTTCTGAA TAGCCCCGATTTCGATTGCAGTCGGGGGTCTCTCTAGACTCATTGGCGGT TCGGTCCGATATGGGGTGGATGAAATATCTTCGCTCAGATAGAAACAATC AAGTTGTTGTTTTATTCTCCATAGTTTGAACATGGCGGGTGTGCCCGCTA CTACCACACTACAGGTCGGGTTAATTGACCCGACACCCACCCACCCCACA GAGAGACCCCCTTCTACTCTACCATGATCAGAAGGGCATCCCACAACAAC ATACCTCTGGTTGACCTATTAATAGATGCTACTGTAGTCGAGAGATGGCG TATTGGAGCTCTACTTTTACGAGAACAAGTCATGCAAATTATTGCGCGTG TTCGGGCTATCCCTCCCGGCTCATCCCCCCCATCCCCACAAAAAAGGACG CAGGCGTGAAGGCAATAATCTCCGGCTTGATCTCCGCCTCGGCGGACTTC CTGCTAGCCTCCTCTTTCAACGGCACCGGCAGCAACGAGTGTCAGAAGCC TCACTCCAAGTACATCGACCTCATCACGGACTGGCGGCTGGACATGGTCG GGAAAGACCTCTCCTCTATCGGGCAGATGCTGCCGCTACCGGAGCTCGTG GAGGGCATCGGGGACGGTCCCCCTCTGGCTCTGCTTGTGCTTTTGGCCGG ACTTGTGGCTCTGGCGGCGGCGTTGGTTTGGGACCAGCGTGTCATCGGAC GGCCCCGATCGAAGAAGGGCAACTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:357137..362412+

>mRNA_Ecto-sp6_S_contig94.18526.1 ID=mRNA_Ecto-sp6_S_contig94.18526.1|Name=mRNA_Ecto-sp6_S_contig94.18526.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=723bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:357137..362412+ (Ectocarpus species6 EcLAC_371)
ATGAAGATGGCGTGGAAAAGCGCTCTCAGGCGAGAACCCGTGGATCTTCT
GAGGCCAAACCCCTTCTACCTGGATTTGGTAGGACAACTCATTGAGGCGC
AGGAGGGTTGGAAGGACGGCGGGTTCTTGTCTGTGCAGTGGAGGACGGAG
ACGTCCACCGGAAACTTGACGGAGTGCTACGGGCTCCACGTGCGGTCGGC
GGTAGAAGAGCGGCGTCTGTCGTTGGGGTTTAGTCGAAGCCAGGTGTTCT
TCAACACCGACCTGGTGGGCGAGACCTCGACAACCTACAACGCCACGGTG
GTGTCCGCGAACCGCGGCGTCGTGGATGCAATCCGCGGGGACTACCCTTG
TGCGATGGATAACACCGTCTACGACATCCTAAATGACGAGCAGGACGCAG
GCGTGAAGGCAATAATCTCCGGCTTGATCTCCGCCTCGGCGGACTTCCTG
CTAGCCTCCTCTTTCAACGGCACCGGCAGCAACGAGTGTCAGAAGCCTCA
CTCCAAGTACATCGACCTCATCACGGACTGGCGGCTGGACATGGTCGGGA
AAGACCTCTCCTCTATCGGGCAGATGCTGCCGCTACCGGAGCTCGTGGAG
GGCATCGGGGACGGTCCCCCTCTGGCTCTGCTTGTGCTTTTGGCCGGACT
TGTGGCTCTGGCGGCGGCGTTGGTTTGGGACCAGCGTGTCATCGGACGGC
CCCGATCGAAGAAGGGCAACTGA
back to top