mRNA_Ecto-sp6_S_contig94.18526.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig94.18526.1 vs. uniprot
Match: A0A6H5JD38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD38_9PHAE) HSP 1 Score: 665 bits (1715), Expect = 1.380e-236 Identity = 366/543 (67.40%), Postives = 375/543 (69.06%), Query Frame = 1
Query: 13 RAIWALLLHNVSAWWLRGETSIPDEVPPLNFSVLVGKEAGGEWLQGAEARSGDSTDALEAGVQQAEGRRSTNIPPRWDSSTCMDSWGVPELQTAVDPGGYLLFSEGREQLGNNRFLLSDGLVIARALNRTLVEFPMQHSRISTADADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLLAAEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQARAWRSSTCYSFLCNYSENLDFEGPACQTRLLRIRGRRCLPELRFAYAASAAAVFFGKH*QMVVTKLASR*SGWIDMLS**KRQVIVMKMAWKSALRREPVDLLRPNPFYLDLVGQLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSANRGVVDAIRGDYPCAMDNTVYDILNDEQDAGVKAIISGLISASADFLLASSFNGTGSNECQKPHSKYIDLITDWRLDMVGKDLSSIGQMLPLPELVEGIGDGPPLALLVLLAGLVALAAALVWDQRVIGRPRSKK 1641
RAIW LLL VSAWWL GETSIPDEVPPLNFSVLVG+EAG EWLQGAEARSGDST ALE GVQQ EGRRSTNIPPRWDSSTCM+SWGVPELQT VDPGGYLLFSEGR YHRILDLWAFRALLRDRLL+AE FLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQARAWR REPVDLLRPNPFYL LVG+LIEAQEGWKDGGFLSVQWRTETSTGNLTECYG+HVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSA GVVDAIRGDYP AMDNTVYDILNDEQDAGVKAI+SGLISASADFLL SSFNGTGSNECQKPHSKYIDL+TDWRLD+VGKDLSSIGQMLPL L EG DG PLALLVLLAGLVALAA LVW+QRVIGRPRSKK
Sbjct: 4 RAIWTLLLQKVSAWWLWGETSIPDEVPPLNFSVLVGEEAGREWLQGAEARSGDSTAALE-GVQQVEGRRSTNIPPRWDSSTCMESWGVPELQTEVDPGGYLLFSEGR------------------------------------------------------YHRILDLWAFRALLRDRLLSAEGFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQARAWR--------------------------------------------------------------------------------------------REPVDLLRPNPFYLGLVGKLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGVHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSAYSGVVDAIRGDYPVAMDNTVYDILNDEQDAGVKAIVSGLISASADFLLTSSFNGTGSNECQKPHSKYIDLVTDWRLDVVGKDLSSIGQMLPLLSLEEGGEDGTPLALLVLLAGLVALAAVLVWNQRVIGRPRSKK 399
BLAST of mRNA_Ecto-sp6_S_contig94.18526.1 vs. uniprot
Match: D7G2V9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2V9_ECTSI) HSP 1 Score: 585 bits (1507), Expect = 3.560e-206 Identity = 310/408 (75.98%), Postives = 315/408 (77.21%), Query Frame = 1
Query: 418 MQHSRISTADADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLLAAEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQARAWRSSTCYSFLCNYSENLDFEGPACQTRLLRIRGRRCLPELRFAYAASAAAVFFGKH*QMVVTKLASR*SGWIDMLS**KRQVIVMKMAWKSALRREPVDLLRPNPFYLDLVGQLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSANRGVVDAIRGDYPCAMDNTVYDILNDEQDAGVKAIISGLISASADFLLASSFNGTGSNECQKPHSKYIDLITDWRLDMVGKDLSSIGQMLPLPELVEGIGDGPPLALLVLLAGLVALAAALVWDQRVIGRPRSKK 1641
MQHSRISTADADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLL+AEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQ VIVMKMAWKSALRREPVDLLRPNP YLD VGQLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSAN GVVDAIRGDYPCAMDNTVYDILNDE+DAGVKAIISGLISASADFLL SSFNGTGSNECQKPHSKYIDL+TDWRL++VGKDLSSIGQMLP P LVEG GDG PLALLVLLAGLVALAA LVWDQRVIGRPRSKK
Sbjct: 1 MQHSRISTADADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLLSAEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQ------------------------------------------------------------------------------------VIVMKMAWKSALRREPVDLLRPNPLYLDSVGQLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSANNGVVDAIRGDYPCAMDNTVYDILNDERDAGVKAIISGLISASADFLLTSSFNGTGSNECQKPHSKYIDLVTDWRLEVVGKDLSSIGQMLPPPLLVEGGGDGQPLALLVLLAGLVALAAVLVWDQRVIGRPRSKK 324
BLAST of mRNA_Ecto-sp6_S_contig94.18526.1 vs. uniprot
Match: A0A6H5KP62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP62_9PHAE) HSP 1 Score: 283 bits (723), Expect = 1.890e-85 Identity = 182/490 (37.14%), Postives = 250/490 (51.02%), Query Frame = 1
Query: 4 RAHRAIWALLLHNVSAWWLRGETSIPDEVPPLNFSVLVGKEAG-GEWLQGAEARSGDSTDALEAGVQQAEGRRSTNIPPRWDSSTCMDSWGVPELQTAVDPGGYLLFSEGREQLGNNRFLLSDGLVIARALNRTLVEFPMQHSRISTADADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLLAAEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQARAWRSSTCYSFLCNYSENLDFEGPACQTRLLRIRGRRCLPELRFAYAASAAAVFFGKH*QMVVTKLASR*SGWIDMLS**KRQVIVMKMAWKSALRREPVDLLRPNPFYLDLVGQLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSANRGVVDAIRGDYPCAMDNTVYDILNDEQDAGVKAIISGLISASADFLLASSFNGTGSNE---CQKPHSKYIDLITDWR 1461
R +A+ A L V+A W+ + V +V +G E G GEW++G + E R + +PP W S+ CM WGVP L T DP GYL+F GREQLG+NR+LLSDGL IA+ LNRTLVEFP+ ++RIS AD+DLG Y+ + LC YHRIL L AFR+L+ L E FL + + +L TA ++ F Y+ QVIVM WKS +RREP+ L++P PFY +L +LI+ Q+GW++ FL+VQWRTETSTGNLT CYG HVR AVE R GF R QVFFNTDL +S TY++ ++ + V+ I DYP AM++TV L++ +D GV+++ SG+++A A LLAS+ ++ CQK HS ++DL+ ++R
Sbjct: 58 RVLKALVATLAAAVAAVWVPSLWTRQSAVELT--TVRLGWEGGRGEWMRGQR--------------ELQERRDARFLPPEWSSADCMKRWGVPWLLTEPDPAGYLIFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRADSDLGFGAYWGLDSLCRYHRILGLGAFRSLIEAGRLDVEKFLVMTPVRPSADPMSTLKTAKDVREAFGGYED------------------------------------------------------------------------------------SQVIVMNDQWKSNIRREPLKLIKPLPFYENLARRLIDQQQGWENEAFLAVQWRTETSTGNLTACYG-HVREAVERYREQEGFDRGQVFFNTDLTPHSSGTYSSQQLAVKQQVLAMIDEDYPSAMNSTVTAYLDNLEDTGVQSLTSGVVAALARVLLASTKRKWWWSQRGVCQKIHSHFVDLVVEFR 446
BLAST of mRNA_Ecto-sp6_S_contig94.18526.1 vs. uniprot
Match: D8LFR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR0_ECTSI) HSP 1 Score: 279 bits (714), Expect = 4.170e-84 Identity = 174/456 (38.16%), Postives = 234/456 (51.32%), Query Frame = 1
Query: 106 SVLVGKEAG-GEWLQGAEARSGDSTDALEAGVQQAEGRRSTNIPPRWDSSTCMDSWGVPELQTAVDPGGYLLFSEGREQLGNNRFLLSDGLVIARALNRTLVEFPMQHSRISTADADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLLAAEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQARAWRSSTCYSFLCNYSENLDFEGPACQTRLLRIRGRRCLPELRFAYAASAAAVFFGKH*QMVVTKLASR*SGWIDMLS**KRQVIVMKMAWKSALRREPVDLLRPNPFYLDLVGQLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSANRGVVDAIRGDYPCAMDNTVYDILNDEQDAGVKAIISGLISASADFLLASSFNG---TGSNECQKPHSKYIDLITDWR 1461
+V +G E G GEW +G + E R + +PP W S+ CM WGVP L T DP GY++F GREQLG+NR+LLSDGL IA+ LNRTLVEFP+ ++RIS AD+DLG Y+D + LC YHRIL L AFR+L+ L E FL + + +L TA ++ F Y+ QVIVM WKS +RR P+ L+RP PFY +L +LI+ Q+GW++ FL+VQWRTETSTGNLT CYG HVR AVE R GF R QVFFNTDL+ +S TY++ ++ V+ I DYP AM+NTV L++ +D GV+++ SG+++A LLAS+ + CQK HS ++DL+ ++R
Sbjct: 92 TVQLGWEGGRGEWTRGQR--------------KLPERRDARFLPPEWGSAGCMKRWGVPWLLTEPDPAGYIIFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRADSDLGFGAYWDLDSLCQYHRILGLGAFRSLIEAGRLDVEKFLVMTPVRPSADPMSTLRTAKDVREAFGGYED------------------------------------------------------------------------------------SQVIVMNGQWKSNIRRYPLKLIRPLPFYENLARRLIDQQQGWENEAFLAVQWRTETSTGNLTACYG-HVREAVERYREQEGFDRGQVFFNTDLMPHSSGTYSSQQLAVKLQVLAMIDEDYPSAMNNTVTAYLDNLEDTGVQSLTSGVVAALPRVLLASTERKWWWSRRGVCQKIHSHFVDLVVEFR 448
BLAST of mRNA_Ecto-sp6_S_contig94.18526.1 vs. uniprot
Match: A0A6H5JCA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA8_9PHAE) HSP 1 Score: 276 bits (707), Expect = 3.970e-82 Identity = 162/460 (35.22%), Postives = 238/460 (51.74%), Query Frame = 1
Query: 166 GDSTDALEAGV-----QQAEGRRSTNIPPRWDSSTCMDSWGVPELQTAVDPGGYLLFSEGREQLGNNRFLLSDGLVIARALNRTLVEFPMQHSRISTAD-ADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLLAAEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQARAWRSSTCYSFLCNYSENLDFEGPACQTRLLRIRGRRCLPELRFAYAASAAAVFFGKH*QMVVTKLASR*SGWIDMLS**KRQVIVMKMAWKSALRREPVDLLRPNPFYLDLVGQLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSANRGVVDAIRGDYPCAMDNTVYDILNDEQDAGVKAIISGLISASADFLLASSFNGTGSNE------CQKPHSKYIDLITDWRLDMVGKDLSSIGQMLP 1509
G+S D E G +QA + PP WDS+ CM WGVPELQ DP GY+++ GREQLG N+FL+SDG+ +A+AL RT VE+P++ +R++ + A +G Y+D LC YHRILDL +FR ++ D + E F T+ S E LL ++ F++Y+++Q VIVM+ WKS R+ + LRPNPF++ +V L+EAQ+ W+ G F++VQWRTE S GNLTECY V++ VEE+R++LG+ QV FNTDL G+TS TY A+ + V+D I DYP A+ N ++ + D+GV+A +SGL AS+ ++ SS N + + C+KP+S YI LIT+WR +++ K+ ++ +M P
Sbjct: 187 GESFDVRENGASAGPQEQALTEGTLATPPAWDSTLCMAHWGVPELQDEPDPNGYVVYVNGREQLGGNKFLVSDGIFMAKALGRTFVEYPVKDARVAKLEEASIGLGAYWDLSELCMYHRILDLNSFRNMMVDGRIPPEAFTTIRSDSHE-VLLYHATDEEHMVDMFKDYEKYQ------------------------------------------------------------------------------------VIVMESTWKSGNERDALQFLRPNPFFVGIVRMLLEAQKDWETGEFVAVQWRTELSNGNLTECYQ-EVKALVEEQRVALGYGTHQVLFNTDLYGKTSGTYKASAQAHGAAVLDLINHDYPHALHNELHQFFTEIDDSGVRAFVSGLAVASSQVMIGSSLNDPRTKDILDAYRCEKPYSGYITLITEWREEILHKEPETVVRMFP 560
BLAST of mRNA_Ecto-sp6_S_contig94.18526.1 vs. uniprot
Match: D7G2V8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2V8_ECTSI) HSP 1 Score: 207 bits (527), Expect = 2.260e-61 Identity = 102/110 (92.73%), Postives = 103/110 (93.64%), Query Frame = 1
Query: 1 LRAHRAIWALLLHNVSAWWLRGETSIPDEVPPLNFSVLVGKEAGGEWLQGAEARSGDSTDALEAGVQQAEGRRSTNIPPRWDSSTCMDSWGVPELQTAVDPGGYLLFSEG 330
LR H AIWALLLHNVSAW L GETSIPDEVPPLNFSVLVGKEAGGEWLQGAEARSGDST ALE GVQQAEGRRSTNIPPRWDSSTCM+SWGVPELQT VDPGGYLLFSEG
Sbjct: 16 LRLHGAIWALLLHNVSAWRLWGETSIPDEVPPLNFSVLVGKEAGGEWLQGAEARSGDSTAALE-GVQQAEGRRSTNIPPRWDSSTCMESWGVPELQTEVDPGGYLLFSEG 124
BLAST of mRNA_Ecto-sp6_S_contig94.18526.1 vs. uniprot
Match: D8LN55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN55_ECTSI) HSP 1 Score: 138 bits (347), Expect = 8.150e-32 Identity = 77/182 (42.31%), Postives = 111/182 (60.99%), Query Frame = 1
Query: 166 GDSTDALE----AGVQQ---AEGRRSTNIPPRWDSSTCMDSWGVPELQTAVDPGGYLLFSEGREQLGNNRFLLSDGLVIARALNRTLVEFPMQHSRISTA-DADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLLAAEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQARAWRSS 687
G+S D E AG Q+ EG +T PP WDS+ CM WGVPELQ DP GY+++ GREQLG N+FL++DG+ +A+AL RT VE+P++ +R++ DA +G Y+D LC YHRILDL +FR ++ D + E F T+ S + + LL +I F++ D++Q A S+
Sbjct: 62 GESFDVRENGASAGPQEQPLTEGTLAT--PPAWDSTLCMAHWGVPELQDEPDPNGYVVYVNGREQLGGNKFLVTDGIFMAKALGRTFVEYPVKDARVAKLEDASIGLGAYWDLSELCMYHRILDLTSFRNMMADGRIPPEAFTTIRS-DTHEVLLRHATDEEHIVDMFKDSDKYQVIAMEST 240 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig94.18526.1 >prot_Ecto-sp6_S_contig94.18526.1 ID=prot_Ecto-sp6_S_contig94.18526.1|Name=mRNA_Ecto-sp6_S_contig94.18526.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=241bp MKMAWKSALRREPVDLLRPNPFYLDLVGQLIEAQEGWKDGGFLSVQWRTEback to top mRNA from alignment at Ecto-sp6_S_contig94:357137..362412+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig94.18526.1 ID=mRNA_Ecto-sp6_S_contig94.18526.1|Name=mRNA_Ecto-sp6_S_contig94.18526.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5276bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:357137..362412+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:357137..362412+ >mRNA_Ecto-sp6_S_contig94.18526.1 ID=mRNA_Ecto-sp6_S_contig94.18526.1|Name=mRNA_Ecto-sp6_S_contig94.18526.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=723bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:357137..362412+ (Ectocarpus species6 EcLAC_371)back to top |