mRNA_Ecto-sp6_S_contig94.18524.1 (mRNA) Ectocarpus species6 EcLAC_371
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig94.18524.1 vs. uniprot
Match: A0A6H5J746_9PHAE (UBA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J746_9PHAE) HSP 1 Score: 602 bits (1553), Expect = 1.120e-213 Identity = 367/419 (87.59%), Postives = 377/419 (89.98%), Query Frame = 1
Query: 52 MSEPASLADENPVAKAYRVWASTCPFTARCTMVGIVGSYLLSFFLPQLDLALNNSPFRTVESFEVYRVVTTVFCSGGLLTVIFGLMSFNTVGPNLERSLGSTGLLALMATLTVVTNLAFIALCYVLVIMGKKKYAFYSSSGIWNLLIALIAVECMATPNVPRRFFILPWDIPGKYYPLFLACIFSFMRGSWMDLFCAVGIGYAYADGRLDRLKPSRSRLASWESGCLANFVERPGYIVSGAAMGAAAFGTPLNNPADHPSNQRAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT------RSSGRSSQTRHDPETARLARLAALEGRTGAXXXXXX---AAAPLLAASDHDVLTLQDMGFTAAEAREALQFTNGDVEAAASYLAA 1281
MSEPASLADENPVAKAYRVWASTCPFTARCTMVGIVGSYLLSFFLPQLDLAL+NSPFRT+ESFEVYR+VTTVFCSGGLLTVIFGLMSFN+VGPNLERSLGSTGLLALM TLT +TNLAFIALCYVLVIMG+KKYAFYSS GIWNLLIALIAVECMATP+VPRRFFILPWDIPGKYYPLFLAC+FSFMRGSWMDLFCA GIGYAYADGRLDRLKPSRS+LASWESGC+ANFVERPGYIVSGAAMGAAAFGTPLNNPADHPSNQRAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RSS RHDPETARLARLAALEGRTGAXXXXXX AAAPLLAASDHDVLTLQDMGFTAAEAREALQFTNGDVEAAASYLAA
Sbjct: 1 MSEPASLADENPVAKAYRVWASTCPFTARCTMVGIVGSYLLSFFLPQLDLALSNSPFRTIESFEVYRLVTTVFCSGGLLTVIFGLMSFNSVGPNLERSLGSTGLLALMVTLTALTNLAFIALCYVLVIMGEKKYAFYSSKGIWNLLIALIAVECMATPDVPRRFFILPWDIPGKYYPLFLACLFSFMRGSWMDLFCAAGIGYAYADGRLDRLKPSRSKLASWESGCMANFVERPGYIVSGAAMGAAAFGTPLNNPADHPSNQRAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRGGTAGTSSLSGDSFAGSGQTLGXXXXXXXXXRSSGRRHDPETARLARLAALEGRTGAXXXXXXXXEAAAPLLAASDHDVLTLQDMGFTAAEAREALQFTNGDVEAAASYLAA 419
BLAST of mRNA_Ecto-sp6_S_contig94.18524.1 vs. uniprot
Match: A0A835Z2V1_9STRA (UBA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2V1_9STRA) HSP 1 Score: 227 bits (579), Expect = 1.500e-66 Identity = 160/427 (37.47%), Postives = 204/427 (47.78%), Query Frame = 1
Query: 79 ENPVAKAYRVWASTCPFTARCTMVGIVGSYLLSFFLPQLDLALNNSPFRTVESFEVYRVVTTVFCSGGLLTVIFGLMSFNTVGPNLERSLGSTGLLALMATLTVVTNLAFIALCYVLVIMGKKKYAFYSSSGIWNLLIALIAVECMATPNVPRRFFILPWDIPGKYYPLFLACIFSFMRGSWMDLFCAVGIGYAYADGRLDRLKPSRSRLASWESGCLANFVERPGYIVSGAAMGAAAFGT------PLNNPADHPSNQRAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSSGRSSQTRHDPETARLARLAALEGR---------------------TGAXXXXXXAAAPLLAASDHDVLTLQDMGFTAAEAREALQFTNGDVEAAASYLA 1278
ENP+ AY WAST PF R + V +LL F+ LDLALNNS T+ S EVYR+ T +T+IFG+M + +GP +E SLGS LLALMA L V N AF+ + +G + ++ G+WNLL+ LI V+CM P+ PR+ F P +IP KYYPL L +FS M G +D+ A+ GYA+A G+LD LKPS SR+ WE+GCL NF R GYI A GT P+NNPA E T + GR S T AR ARLAALE R XXX A + LL+ +DH+V+ LQDMG++A +AREAL T GD+ AA +YLA
Sbjct: 13 ENPIMTAYNGWASTKPFVTRSMCILQVVLFLLGMFV-DLDLALNNSLHYTIYSLEVYRIFTASLWCTSFITLIFGVMVLSQMGPKMEYSLGSARLLALMAILDVAANSAFLLFGLLSTALGNRAAELSAAQGLWNLLMPLIVVDCMQMPDFPRKLFFFPCEIPSKYYPLALFALFSIMGGVRVDMALALATGYAFAFGKLDCLKPSISRVQGWENGCLRNFTSRQGYIT--------ATGTQQEPWQPVNNPAGRTQGDGGESGSGGSAWVSRNSGPVTAPSVVNKKPAASAFTGSGQTLGGGSTSRTSVV-------------TSALGRGSNT-DVAAAARAARLAALEARGXXXXXXXXXXXXXXXXXXXXXXXXXXGVGATSSLLSNTDHEVMMLQDMGYSADDAREALTHTEGDINAAVAYLA 416
BLAST of mRNA_Ecto-sp6_S_contig94.18524.1 vs. uniprot
Match: A0A7S3XPX1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPX1_HETAK) HSP 1 Score: 202 bits (515), Expect = 5.860e-59 Identity = 105/254 (41.34%), Postives = 154/254 (60.63%), Query Frame = 1
Query: 70 LADENPVAKAYRVWASTCPFTARCTMVGIVGSYLLSFFLPQLDLALNNSPFRTVESFEVYRVVTTVFCSGGLLTVIFGLMSFNTVGPNLERSLGSTGLLALMATLTVVTNLAFIALCYVLVIMGKKKYAFYSSSGIWNLLIALIAVECMATPNVPRRFFILPWDIPGKYYPLFLACIFSFMRGSWMDLFCAVGIGYAYADGRLDRLKPSRSRLASWESGCLANFVERPGYIVSGAAMGAAAFGTPLNNPADHPS 831
L NP+ + Y W+++ PF R + + YLLS+ + L AL+N P+ ++ EVYR++ + + LL+V+F +MSF+ G LE++ GS LLALM T++V TN+AF+ LC++L +G + FYS W + + L+ +E M + R+ LP IP K+YPL L F G +D A+GIGY YA G L L+PSRSRL WE GCL+ V+R G+I S +A+GA A+ P+NNP+ HPS
Sbjct: 8 LPQGNPILEYYNNWSASTPFITRSACMAVAALYLLSWVI-DLSQALSNVPYYSINHLEVYRLIFSPLYTTSLLSVVFIMMSFSGTGRQLEQAFGSASLLALMFTISVGTNVAFVVLCFLLAALGTPEAMFYSCGTFWIIFMGLVVIESMNSGTESRKLLFLPVQIPIKFYPLALYGFFMLFTGFRLDTLLALGIGYLYAWGYLKFLEPSRSRLEGWEVGCLSGMVQRVGFITSSSAVGATAW-LPVNNPSGHPS 259
BLAST of mRNA_Ecto-sp6_S_contig94.18524.1 vs. uniprot
Match: A0A7S2R8N5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R8N5_9STRA) HSP 1 Score: 186 bits (471), Expect = 2.550e-51 Identity = 94/245 (38.37%), Postives = 139/245 (56.73%), Query Frame = 1
Query: 61 PASLADENPVAKAYRVWASTCPFTARCTMVGIVGSYLLSFFLPQLDLALNNSPFRTVESFEVYRVVTTVFCSGGLLTVIFGLMSFNTVGPNLERSLGSTGLLALMATLTVVTNLAFIALCYVLVIMGKKKYAFYSSSGIWNLLIALIAVECMATPNVPRRFFILPWDIPGKYYPLFLACIFSFMRGSWMDLFCAVGIGYAYADGRLDRLKPSRSRLASWESGCLANFVERPGYIVSGAAMGAAAF 795
P NPV+ Y WA+ P R T+ + YL S+F L LAL + P+ TV E YR+V LL+++F ++F+++G LE S+GS L ALM ++ VT+L FI C+++ G + F+ S G W +L+ LI +EC+ +P+ RR LP++IP K+YPL L FSF G +D+ ++ +GY GRLD +KPS + + WE GCLANF R YI G+A + +
Sbjct: 9 PMDAGSSNPVSDWYHEWAARTPLATRYTLQTLTVLYLFSWF-SSLSLALIDIPYYTVFKLEFYRIVLAPLFCNSLLSLLFIFLTFSSMGSRLEYSIGSVQLFALMGIISTVTHLGFILFCFLMATFGTYEALFFQSQGFWVILMGLIVIECLDSPDGTRRLLFLPFNIPTKFYPLALYFFFSFFTGPRIDMAISMAVGYVVHTGRLDAVKPSTNTVDVWERGCLANFTTRQHYITQGSAQAGSGW 252
BLAST of mRNA_Ecto-sp6_S_contig94.18524.1 vs. uniprot
Match: A0A7S2I7V0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I7V0_9STRA) HSP 1 Score: 158 bits (399), Expect = 6.930e-41 Identity = 88/251 (35.06%), Postives = 144/251 (57.37%), Query Frame = 1
Query: 52 MSEPASLADENPVAKAYRVWASTCPFTARCTMVGIVGSYLLSFFLPQLDLALNNSPFRTVESFEVYRVVTTVFCSGGLLTVIFGLMSFNTVGPNLERSLGSTGLLALMATLTVVTNLAFIALCYVLVIMGKKKYAFYSS-SGIWNLLIALIAVECMATP-NVPRRFFILPWDIPGKYYPLFLACIFSFMRGSWMDLFCAVGIGYAYADGRLDRLKPSRSRLASWE-SGCLANFVERPGYIVSGAAMGAAAF 795
M+ P++ NPV AY + P R T+ ++ LSFF+ ++ A++N P T+ FE+YR++T+ LL++IF +SF T G LE+SLGS L+ TL+++TN+ ++ + + + + + SGIW +L+ LIA+EC P + R+ F++ ++P YYPL L +F+ G +VG+GYAY +LD LK ++++L WE SGCL NF R G++ AA+G +A+
Sbjct: 1 MTNPSAPPQPNPVLSAYESFVRDTPLITRYTLTSQFVTWFLSFFVNPVN-AISNIPLFTILHFELYRIITSPIVCTSLLSLIFAFISFTTHGKTLEQSLGSAAFGTLILTLSLLTNILYLVIAFTMYFITSSQICLIMPCSGIWIILLGLIAIECSCAPADSKRKLFVV--EVPTLYYPLALLGLFTLFGGINFSYVISVGVGYAYGRNKLDFLKVNQNKLNRWEESGCLRNFAGRQGWVKGMAALGGSAW 248
BLAST of mRNA_Ecto-sp6_S_contig94.18524.1 vs. uniprot
Match: A0A482UV15_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UV15_9ARCH) HSP 1 Score: 138 bits (347), Expect = 4.740e-34 Identity = 77/265 (29.06%), Postives = 131/265 (49.43%), Query Frame = 1
Query: 73 ADENPVAKAYRVWASTCPFTARCTMVGIVGSYLLSFFLPQLDLALNNSPFRTVESFEVYRVVTTVFCSGGLLTVIFGLMSFNTVGPNLERSLGSTGLLALMATLTVVTNLAFIALCYVLVIMGKKKYAF----------------------------------------YSSSGI-------WNLLIALIAVECMATPNVPRRFFILPWDIPGKYYPLFLACIFSFMRGS-WMDLFCAVGIGYAYADGRLDRLKPSRSRLASWES 723
A +NP+ +++ W + PF R + +V YLLSFF+ + + L+N P+ TV+ F+++R++T+ F + T++ L++F +G LE S+GS+ L+L+ T+V N+ F+ + Y Y + YS+S + W +L AL+ ++CM+TP+ PRR +P+DIP KY PL L + + GS + ++G+GYA G +DR +PS LA E+
Sbjct: 12 AQQNPLLQSFNAWKARTPFVTRTLTISLVVMYLLSFFI-RWEYYLSNIPYYTVQYFQLFRLITSPFAGNSIFTLLLVLITFPAIGLKLETSMGSSSYLSLLGLTTLVVNIGFVLIAYTAYFFMGMVYGYGRDVDTPYTHSSDGASQDNTGVTSGSAVGGGVHHGVGLDTYSTSPLTWVCMDFWTVLFALLTLDCMSTPDTPRRLLCIPYDIPSKYLPLVLYALVCVLSGSLYTSYLISMGMGYAVCMGYMDRCRPSSQYLAGLEA 275
BLAST of mRNA_Ecto-sp6_S_contig94.18524.1 vs. uniprot
Match: A0A8J2SUH8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SUH8_9STRA) HSP 1 Score: 115 bits (288), Expect = 2.920e-25 Identity = 80/259 (30.89%), Postives = 123/259 (47.49%), Query Frame = 1
Query: 76 DENPVAKAYRVWASTCPFTARCTMVGIVGSYLLSFFLPQLDLALNNSPFRTVESFEVYRVVTTVFCSGGLLTVIFGLMSFNT-VGPNLERSLGSTGLLALMATLTVVTNLAFIALCYVLVIM-GKKKYAFYSSSGIWNLLIALIAVECMATPNVPRRFFILPWDIPGKYYPLFLACIFSFMRGSWMDLFCAVGIGYAYADGRLDRLKPSRSRLASWESG-CLANFVERPGYIVSGAAMGAAAFGTPLNNPADHPSNQRA 843
D NP+ +AY WA+ P R VG+ Y S+ L L L PFR V FE++R++ + LL + L VGP LE+S GS ++ T ++V NL+F ALCY+ +M G + A ++SG W LL+ LI +EC+++P+ R +P +P YP L + A G L+ LKP + ++ E+ LA ++ + ++GA+AF + AD P N A
Sbjct: 7 DANPLNRAYEAWAARTPVVCRGLCVGLAACYGFSWIL-DLQRGLETVPFRIVRRFELWRLILSPCVGNSLLGTVVALFVLGDGVGPRLEQSWGSMRMMIATLTASIVINLSFCALCYLFTMMIGSAEPALAATSGGWPLLLCLITIECLSSPDGTRPLPCIPIQVPRDRYPAALLLXXXXXGAPKLXXXXXXXXXXXXAKGYLEVLKPKPALVSRCEAASALACVTSDSTFVSAERSLGASAFTVSGGDWAD-PENPSA 263
BLAST of mRNA_Ecto-sp6_S_contig94.18524.1 vs. uniprot
Match: A0A7S3Y824_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Y824_9EUKA) HSP 1 Score: 101 bits (252), Expect = 1.030e-19 Identity = 73/243 (30.04%), Postives = 122/243 (50.21%), Query Frame = 1
Query: 43 QGGMSEPASLADENPVAKAYRVWASTCPFTARCTMVGIVGSYLLSFFLPQLDLALNNSPFRTVESFEVYRVVTTVFCSGGLLTVIFGLMSFNTVGPNLERSLGSTGLLALMATLTVVTNLAFIALCYVLVIMGKKKYAFYSS---SGIWNLLIALIAVECMATPNVPRRFFILPWDIPGKYYPLFLACIFSFMRGSWMDLFCAVGIGYAYADGRLDRLKPSRSRLASWESGCLANFVERPGYI 762
Q G + S+ D + + WAS P+ ++ + + S++LSFFL + L N P T+ F+++R+ T+ S G+ T IF ++ LE GS LL T++++ N+ F A+ L ++G +++ +G+W +L L+AV C + + + LP +P K+YPL L CIF + G + LFC +G+GY YA L S +L +E+G A P +I
Sbjct: 16 QAGQPQGGSIGD-----RCAQCWASI-PYVSKKLIHLALVSFILSFFLGGI---LANYPVYTLYYFQLWRLFTSPLVSKGIFTGIFAIVWIAQSCRQLESEHGSMYLLHAFGTVSILGNVLFTAIAGGLSLIGGGVGSWFGKQVMAGLWPVLFGLLAVRCSLSQDPTTQLCCLPIQVPTKWYPLILGCIFQ-LFGIQIALFCGIGVGYLYAYPN-SHLACSSEKLREYENGRCACISSDPSFI 247
BLAST of mRNA_Ecto-sp6_S_contig94.18524.1 vs. uniprot
Match: A0A7S2TRD3_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TRD3_9EUKA) HSP 1 Score: 96.7 bits (239), Expect = 4.920e-18 Identity = 71/250 (28.40%), Postives = 116/250 (46.40%), Query Frame = 1
Query: 94 KAYRVWASTCPFTARCTMVGIVGSYLLSFFLPQLDLALNNSPFRTVESFEVYRVVTTVFCSGGLLTVIFGLMSFNTVGPNLERSLGSTGLLALMATLTVVTNLAFIALCYVLVIMGKKKYAFYSS---SGIWNLLIALIAVECMATPNVPRRFFILPWDIPGKYYPLFLACIFSFMRGSWMDLFCAVGIGYAYADGRLDRLKPSRSRLASWESGCLANFVERPGYIVSGAAMGAAAFGTPLNNPADHPSN 834
+ + WAS + + + +VG ++LSFFL L N P T+ E++R+ T+ S G+ T IF ++ LE GS LL T++++ N+ F + L +G ++ +G+W +L L+AV C + + + LP +P K+YP+ L CIF + G + LFC +G GY YA + S +L +E+G A P +I A + PL D+ N
Sbjct: 30 RCAQCWASIPYVSKKLIHLALVG-FILSFFLAG---TLANVPEYTIHHLELWRIFTSFLVSKGIFTGIFAILWIAQSCRQLEGEHGSMYLLHAFGTVSILGNVFFTVIAGSLSFVGGGVGEWFQKQIMAGLWPVLFGLLAVRCSLSQDPTTQLCCLPIQVPTKWYPVILGCIFQ-LFGFQIALFCGIGAGYLYAYPN-SHMACSSEKLREYENGRFACISSDPSFISVDNAQALPVW-NPLTMQGDNQGN 272
BLAST of mRNA_Ecto-sp6_S_contig94.18524.1 vs. uniprot
Match: K0SLI4_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SLI4_THAOC) HSP 1 Score: 89.0 bits (219), Expect = 1.500e-15 Identity = 61/188 (32.45%), Postives = 92/188 (48.94%), Query Frame = 1
Query: 307 MSFNTVGPNLERSLGSTGLLALMATLTVVTNLAFIALCYVLV-IMGKKKYAFYSSSGIWNLLIALIAVEC-MATPNVPRRFFILPWDIPGKYYPL-------------------FLACIFSFMRGSWMDLFCAVGIGYAYADGRLDRLKPSRSRLASWES----GCLANFVERPGYIVSGAAMGAAAF 795
M F G LE+SLGS+ L TLT+ TN+ F+A+ +L + + + +S GIW +L+ +IA EC A P+ ++ F L ++ YYP+ L +FS + G + V +GY G+LDR K R+ WE+ G L+ FV RPG+I G+A G A+
Sbjct: 143 MGFMNHGVKLEQSLGSSYFAVLFFTLTIATNVLFLAIEILLWGLTNNEAHLLSASMGIWVVLLGIIAAECAQAPPDTIKKLFFL--EVKAVYYPMGTSSSWAVYGCNESDVQLPVLLGLFSLLGGPRLSYCLGVAVGYXXXXGKLDRFKVRVERVRKWENRDQNGFLSGFVRRPGFITIGSATGPMAW 328 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig94.18524.1 >prot_Ecto-sp6_S_contig94.18524.1 ID=prot_Ecto-sp6_S_contig94.18524.1|Name=mRNA_Ecto-sp6_S_contig94.18524.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=428bp SDALIGRSATEGRQQGGMSEPASLADENPVAKAYRVWASTCPFTARCTMVback to top mRNA from alignment at Ecto-sp6_S_contig94:340130..348935+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig94.18524.1 ID=mRNA_Ecto-sp6_S_contig94.18524.1|Name=mRNA_Ecto-sp6_S_contig94.18524.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8806bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:340130..348935+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:340130..348935+ >mRNA_Ecto-sp6_S_contig94.18524.1 ID=mRNA_Ecto-sp6_S_contig94.18524.1|Name=mRNA_Ecto-sp6_S_contig94.18524.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1284bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:340130..348935+ (Ectocarpus species6 EcLAC_371)back to top |