mRNA_Ecto-sp6_S_contig94.18515.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig94.18515.1
Unique NamemRNA_Ecto-sp6_S_contig94.18515.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig94contigEcto-sp6_S_contig94:189612..190246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size635
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350573.641287-UTR-Ecto-sp6_S_contig94:189611..1896241682350573.641287-UTR-Ecto-sp6_S_contig94:189611..189624Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 189612..189624 +
1682350573.6606321-UTR-Ecto-sp6_S_contig94:189984..1902461682350573.6606321-UTR-Ecto-sp6_S_contig94:189984..190246Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 189985..190246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350573.6512747-CDS-Ecto-sp6_S_contig94:189624..1899841682350573.6512747-CDS-Ecto-sp6_S_contig94:189624..189984Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 189625..189984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig94.18515.1prot_Ecto-sp6_S_contig94.18515.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig94 189625..189984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig94.18515.1

>prot_Ecto-sp6_S_contig94.18515.1 ID=prot_Ecto-sp6_S_contig94.18515.1|Name=mRNA_Ecto-sp6_S_contig94.18515.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=120bp
MVMSMTPTLTSPFEAGLLPYCNTMVASPTLFWQHVPLTQTKTSRRPKLHP
HDWRYQTPRCVMFTGKVFFVAGICMSHFVSEPLFGSKHVKRCTTNSEPRM
ILHDSILTVATFGPRNEHK*
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mRNA from alignment at Ecto-sp6_S_contig94:189612..190246+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig94.18515.1 ID=mRNA_Ecto-sp6_S_contig94.18515.1|Name=mRNA_Ecto-sp6_S_contig94.18515.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=635bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:189612..190246+ (Ectocarpus species6 EcLAC_371)
GCTACGCCAGGCCATGGTAATGTCGATGACGCCCACATTGACATCACCTT
TTGAAGCAGGTCTGCTACCCTACTGCAACACAATGGTCGCTTCACCAACA
CTATTCTGGCAGCATGTACCACTCACTCAGACCAAAACCTCAAGGCGCCC
GAAGCTTCACCCACACGATTGGCGCTACCAAACTCCACGCTGTGTTATGT
TCACAGGGAAAGTGTTCTTCGTCGCAGGCATTTGTATGAGCCATTTCGTG
TCTGAGCCACTATTTGGTTCAAAACATGTCAAAAGATGCACAACAAATTC
CGAACCCCGTATGATCCTACACGATTCCATCCTTACAGTGGCCACGTTTG
GACCCCGCAATGAACACAAGTAGCCCTCCAAGTAACAACTTTCACCCAAA
AACGGTTGAAACAAGATTGTGACGCTGAAAAGGAAGGAAAACGTATCCGC
CAGATGTGCTGAGCCTTCAAGAGATGAAAAGTACGACTGCCTCAACAAAA
CAAACTTCAGTATTCACAAGGACAGCAGTGTAGTGGCAAGACGAGAAGTG
AGATCGATCCAAACGCAACACGGACGAGTGCTACTGACGTGCAACTCGCA
ATAAGGTTGCCTAGACTTTTTGACGACCCGCAAAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:189612..190246+

>mRNA_Ecto-sp6_S_contig94.18515.1 ID=mRNA_Ecto-sp6_S_contig94.18515.1|Name=mRNA_Ecto-sp6_S_contig94.18515.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:189612..190246+ (Ectocarpus species6 EcLAC_371)
ATGGTAATGTCGATGACGCCCACATTGACATCACCTTTTGAAGCAGGTCT
GCTACCCTACTGCAACACAATGGTCGCTTCACCAACACTATTCTGGCAGC
ATGTACCACTCACTCAGACCAAAACCTCAAGGCGCCCGAAGCTTCACCCA
CACGATTGGCGCTACCAAACTCCACGCTGTGTTATGTTCACAGGGAAAGT
GTTCTTCGTCGCAGGCATTTGTATGAGCCATTTCGTGTCTGAGCCACTAT
TTGGTTCAAAACATGTCAAAAGATGCACAACAAATTCCGAACCCCGTATG
ATCCTACACGATTCCATCCTTACAGTGGCCACGTTTGGACCCCGCAATGA
ACACAAGTAG
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